Gene family data from the PhyloGenes (release version 1.2, phylogenes.org)

<p>The compressed file contains:&nbsp;</p> <p><br> 1. PhyloXML_files&nbsp;</p> <p>This folder has family trees in PhyloXML format, one file per family (e.g. &lt;family_ID&gt;.xml).</p> <p>The following information is provided for each node of a tree:<br> 1) leaf node:<br> branch length<br> name &lt;gene_id&gt;<br> taxonomy scientific_name<br> sequence accession &lt;UniProt ID&gt;</p> <p>2) non-leaf&nbsp;node:<br> branch length<br> events &lt;duplication or speciation&gt;</p> <p><br> 2. phylogenes_csv.tar.xz</p> <p>This tar file has gene information of family members in CSV format, one file per family (e.g. &lt;family_ID&gt;.csv).&nbsp;</p> <p>A CSV file includes the following columns:<br> Uniprot ID<br> Gene &lt;Gene name. If none then Gene ID&gt;<br> Gene ID<br> Gene name<br> Organism<br> Subfamily name</p> <p>Any columns displayed after &#39;Subfamily name&#39; are &#39;Known functions&#39;. Each &#39;Known function&#39; is a GO molecular function term that is annotated to at least one member of the gene family AND that the annotation is supported by an experimental evidence. Number 1 or 0 indicates the presence or absence of a particular function in a gene.</p>