Data from: Accurate genomic predictions for chronic wasting disease in U.S. white-tailed deer

<p>The geographic expansion of chronic wasting disease (CWD) in U.S. white-tailed deer (<em>Odocoileus virginianus</em>) has been largely unabated by best management practices, diagnostic surveillance, and depopulation of positive herds. Using a custom Affymetrix Axiom® single nucleotide polymorphism (SNP) array, we demonstrate that both differential susceptibility to CWD, and natural variation in disease progression, are moderately to highly heritable ( among farmed U.S. white-tailed deer, and that loci other than <em>PRNP</em> are involved. Genome-wide association analyses using 123,987 quality filtered SNPs for a geographically diverse cohort of 807 farmed U.S. white-tailed deer (n = 284 CWD positive; n = 523 CWD non-detect) confirmed the prion gene (<em>PRNP</em>; G96S) as a large-effect risk locus (<em>P</em>-value &lt; 6.3E-11), as evidenced by the estimated proportion of phenotypic variance explained (PVE ≥ 0.05), but also demonstrated that more phenotypic variance was collectively explained by loci other than <em>PRNP</em>.<em> </em>Genomic best linear unbiased prediction (GBLUP; n = 123,987 SNPs) with <em>k</em>-fold cross validation (<em>k</em> = 3; <em>k</em> = 5) and random sampling (n = 50 iterations) for the same cohort of 807 farmed U.S. white-tailed deer produced mean genomic prediction accuracies ≥ 0.81; thereby providing the necessary foundation for exploring a genomically-estimated CWD eradication program.</p>