Skip to main content
zenodoopen

N/OFQ-NOPa models data

<p>This enty contains:</p> <ul> <li>MD input files and scripts to run the simulations of six different predicted N/OFQ-NOP complexes obtained with different modelling approaches, as follows:&nbsp;<br> <table> <tbody> <tr> <td>Model name</td> <td>Method</td> </tr> <tr> <td>5C1M_HM_P4</td> <td>&nbsp;Homology modelling + peptide docking</td> </tr> <tr> <td>6DDE_HM_P3 &nbsp; </td> <td>Homology modelling + peptide docking</td> </tr> <tr> <td>AF_MS1_P2</td> <td>AI-based modelling + peptide docking</td> </tr> <tr> <td>AF_MS2_P1</td> <td>AI-based modelling + peptide docking</td> </tr> <tr> <td>AF_R2M5</td> <td>AI-based modelling</td> </tr> <tr> <td>AFc_R1M5 &nbsp;</td> <td>AI-based modelling</td> </tr> </tbody> </table> </li> <li>MD topology (.psf) and trajectory (.dcd) files of all six systems plus vmd script (.vmd ) to visualise the&nbsp; trajectory with lowest peptide and receptor RMSD and RMSF profiles </li> </ul>

ShareScore

32/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
4
Harmonization
4
Access
16
Reuse readiness
8
Engagement
0

Dataset details

Repository
zenodo
Published
February 28, 2024
License
cc-by-4.0
DOI
10.5281/zenodo.10728597

Scored with release 0.9.0

ScienceDex for faculty

Your academic CV and NIH biosketch

Make your CV in your school's format and your NIH biosketch from it, then download both as Word files.