N/OFQ-NOPa models data
<p>This enty contains:</p> <ul> <li>MD input files and scripts to run the simulations of six different predicted N/OFQ-NOP complexes obtained with different modelling approaches, as follows: <br> <table> <tbody> <tr> <td>Model name</td> <td>Method</td> </tr> <tr> <td>5C1M_HM_P4</td> <td> Homology modelling + peptide docking</td> </tr> <tr> <td>6DDE_HM_P3 </td> <td>Homology modelling + peptide docking</td> </tr> <tr> <td>AF_MS1_P2</td> <td>AI-based modelling + peptide docking</td> </tr> <tr> <td>AF_MS2_P1</td> <td>AI-based modelling + peptide docking</td> </tr> <tr> <td>AF_R2M5</td> <td>AI-based modelling</td> </tr> <tr> <td>AFc_R1M5 </td> <td>AI-based modelling</td> </tr> </tbody> </table> </li> <li>MD topology (.psf) and trajectory (.dcd) files of all six systems plus vmd script (.vmd ) to visualise the trajectory with lowest peptide and receptor RMSD and RMSF profiles </li> </ul>
ShareScore
32/100
Overall dataset sharing score
Score breakdown
These five areas show where the dataset supports — or may limit — practical reuse.
- Stewardship
- 4
- Harmonization
- 4
- Access
- 16
- Reuse readiness
- 8
- Engagement
- 0
Dataset details
- Repository
- zenodo
- Published
- February 28, 2024
- License
- cc-by-4.0
- DOI
- 10.5281/zenodo.10728597
Scored with release 0.9.0
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