Data from: Genome assembly of Danaus chrysippus and comparison with the Monarch Danaus plexippus

<p><strong>GENOME ASSEMBLY DATA</strong></p> <p><strong>Dchry2_unaltered.fa.gz</strong><br> Unaltered version of Dchry2 before manual edits</p> <p><strong>Dchry2.haplotigs.fasta.gz</strong><br> Haplotypic contigs removed in the Purge_haplotigs step</p> <p><strong>Dchry2_to_Dchry2.2_transfers.txt</strong><br> Edits of the Dchry2 assembly to produce Dchry2.2 (contig breaks, reverse complements and name changes). Columns are: new contig name, new contig start, new contig end, original contig name, original contig start, original contig end, orientation. New contig numbers indicate the chromosome they correspond to.</p> <p><strong>mxv1.200520.ragoo.rnm.fa.gz</strong><br> Fasta file from of MEX_DaPlex assembly with mxdp_ fasta headers</p> <p><br> <strong>GENE AND REPEAT ANNOTATION</strong></p> <p><strong>danaus_plex_mex_braker_a002.sequences.tidy.gff3.gz</strong><br> Sorted and tidied gff3 from MEX_DaPlex re-annotation&nbsp;</p> <p><strong>danaus_plexv4_braker_a006.sequences.tidy.gff3.gz</strong><br> Sorted and tidied gff3 from Dplex_v4 re-annotation&nbsp;</p> <p><strong>mxv1.200520.ragoo.rnm.wDpv3.gff3.gz</strong><br> gff3 file from Cei of MEX_DaPlex annotation</p> <p><strong>dplex2_uniprot-proteome_UP000596680_and_dplex_mex.fasta.gz</strong><br> Protein set used for annotation of all three assemblies</p> <p><strong>functional_annotation_output.tar.gz</strong><br> all output from pannzer2 regarding functinal annotation of the Dchry2.2 genome</p> <p><strong>Lepidoptera_and_danaus_chrysippus2.2.repeatmasker.gz</strong><br> Custom repeat library (combination of lepidoptera and specific dchry2.2 library)</p>