Data and output files for the paper, "Dynamical systems inference at scale reveals intrinsic instability in the dysbiotic microbiome"

<p>The above files contain the output of&nbsp;the model, which we call MDSINE2,&nbsp;developed in the paper titled, &quot;<em>Dynamical systems inference at scale reveals intrinsic instability in the dysbiotic microbiome</em>&quot;&nbsp;(See https://github.com/gerberlab/MDSINE2_Paper for implementation details). More specifically, forward_sims.tgz contains the output of forward simulations in .npy format; mixed_prior_fixed.tgz contains the pickle files corresponding to the output of the MCMC simulations for fixed topology;&nbsp;mixed_prior_unfixed.tgz contains the pickle files corresponding to the output of the MCMC simulations for unfixed&nbsp;topology; other_files contains information on eigenvalues and&nbsp;cycles,&nbsp;results for Phylogenetic Neighborhood Analysis, Keystoneness Analysis&nbsp;and&nbsp;the output in .npy format for comparator methods; ASV_OTU_aggregate_and_plylogeneteic trees contains the plots of trajectories (relative abundance) of OTUS&nbsp;and&nbsp;their constituent ASVs, and of phylogenetic trees.&nbsp;</p>