Genetic basis of cytonuclear conflicts in citrus hybridization, domestication, and diversification

<p>184.cp.variations.map.vcf.zip--the chloroplast variation map of 184 samples<br> 184.mt.variations.map.vcf.zip----the&nbsp;mitochondrial variation map of 184 samples<br> aligment1.fa-- the group of grapefruit, sweet orange and sour orange for mitochondrial&nbsp;heteroplasmy analysis<br> aligment2.fa-- the group of lemon for mitochondrial&nbsp;heteroplasmy analysis<br> coverage depth of 184 short reads samples.zip --&nbsp;the coverage depth of BAMs in&nbsp;mitochondrial variation map in&nbsp;184 samples<br> Fortunella hindsii mitochondrial genome.gb -- the conservation proteins annotation of kumquat reference&nbsp;mitochondrial genome<br> GWAS-118.samples.input.phenotype.for GWAS.txt -- the inputfiles for GWAS&nbsp;<br> GWAS-LD.linked.input.gwas.vcf.gz -- the LD linked variations for GWAS<br> LD.purning.nuclear.variation.map.vcf.gz -- LD purning nuclear variations for demography analysis<br> normalization.RNA-seqs.txt -- the nomarlization data of expression of&nbsp;mitochondrial genome<br> nuclear.variation.map.vcf.gz --&nbsp;the nuclaer variation map<br> ORFs annotation based on Augustus.gtf -- the annotation gene structure using Augustus&nbsp;<br> pan-genome and aligned mitochondrial genomes.zip -- the pan-genome(.fa and .gfa) and aligned mitochondrial genomes<br> scaffold-assemblies.zip -- the scaffolds of&nbsp;mitochondrial genomes</p>