MIntO - Tutorial

<p>MIntO tutorial.</p> <p>Subset of 10 human gut microbiome samples, matching Illumina metagenomic (<strong>metaG</strong>) and metatranscriptomic (<strong>metaT</strong>) data, to illustrate the use of MIntO.</p> <p>The subset of 10 metagenomes from the Inflammatory Bowel Disease Multi&rsquo;omics Database (IBDMDB) correspond to two participants with Crohn&rsquo;s disease&nbsp;(<code>CD1</code>&nbsp;and&nbsp;<code>CD2</code>).&nbsp;</p> <p>- Samples from&nbsp;<code>CD1</code>: CD136, CD138, CD140, CD142, CD146.</p> <p>- Samples from&nbsp;<code>CD2</code>: CD237, CD238, CD240, CD242 and CD244.</p> <p>&nbsp;</p> <p>There are two files:</p> <p>- IBD_tutorial_raw.tar.gz&nbsp;comprises the raw reads to run this tutorial! This samples have been filtered from the original ones and only include reads matching to 5 genomes (<em>Faecalibacterium prausnitzii</em>, <em>Parabacteroides distasonis</em>, <em>Bacteroides fragilis</em>, <em>Ruminococcus bromii</em> and <em>Bacteroides_uniformis</em>)</p> <p>- IBD_tutorial_output.tar.gz` comprises the output, after running MIntO.</p> <p>&nbsp;</p>