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Integrated data-driven reannotation of the Kluyveromyces marxianus genome reveals an expanded protein coding repertoire

<p>Supplementary data for Fenton et al. 2022.&nbsp;</p> <table> <tbody> <tr> <td>Supplementary Table</td> <td>ID</td> <td>Table Description</td> </tr> <tr> <td>supplementary table 1</td> <td>S1</td> <td>Transcript Start Site (TSS) metrics</td> </tr> <tr> <td>supplementary table 2</td> <td>S2</td> <td>Polyadenylation Site (PAS) metrics</td> </tr> <tr> <td>supplementary table 3</td> <td>S3</td> <td>NTE candidates&nbsp;</td> </tr> <tr> <td>supplementary table 4</td> <td>S4</td> <td>MTS candidates</td> </tr> <tr> <td>supplementary table 5</td> <td>S5</td> <td>iORFs candidates</td> </tr> <tr> <td>supplementary table 6</td> <td>S6</td> <td>uORFs candidates</td> </tr> <tr> <td>supplementary table 7</td> <td>S7</td> <td>ouORFs candidates</td> </tr> <tr> <td>supplementary table 8</td> <td>S8</td> <td>aORFs candidates</td> </tr> <tr> <td>supplementary table 9</td> <td>S9</td> <td>tRNA copy numbers</td> </tr> <tr> <td>supplementary table 10</td> <td>S10</td> <td>novel gene periodicity scores</td> </tr> <tr> <td>supplementary table 11</td> <td>S11</td> <td>description of novel genes</td> </tr> <tr> <td>supplementary table 12</td> <td>S12</td> <td>comparison of published genomes</td> </tr> <tr> <td>supplementary table 13</td> <td>S13</td> <td>table corrections</td> </tr> <tr> <td>supplementary table 14</td> <td>S14</td> <td>start codon corrections</td> </tr> <tr> <td>supplementary table 15</td> <td>S15</td> <td>Genes with splicing (at least one intron)</td> </tr> </tbody> </table>

ShareScore

40/100

Overall dataset sharing score

Score breakdown

These five areas show where the dataset supports — or may limit — practical reuse.

Stewardship
8
Harmonization
4
Access
16
Reuse readiness
8
Engagement
4

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