Supplementary datasets for manuscript bioRxiv https://doi.org/10.1101/2022.06.03.494642

<p><a href="https://drive.google.com/drive/folders/1xHsLC8ZDWJXm8f7fdXTcXr9hKszN3xpt?usp=sharing"><strong>Supplementary Data 1.</strong> </a>&nbsp;Database of reference human messenger RNAs and SARS-CoV-2 genomes used for mapping reads. &nbsp;Raw count matrices.</p> <p>&nbsp;</p> <p><a href="https://drive.google.com/drive/folders/1xHsLC8ZDWJXm8f7fdXTcXr9hKszN3xpt?usp=sharing"><strong>Supplementary Data 2</strong></a><strong>.</strong> &nbsp;Expression matrices and transcript levels in uninfected cells.</p> <p>&nbsp;</p> <p><a href="https://drive.google.com/drive/folders/1xHsLC8ZDWJXm8f7fdXTcXr9hKszN3xpt?usp=sharing"><strong>Supplementary Data 3.</strong> </a>&nbsp;Differential Expressed Gene analysis used in the volcano plots analysis. Datasets and results used in the Gene Ontology analyses. &nbsp;Classification of outliers.</p> <p>&nbsp;</p> <p><a href="https://drive.google.com/drive/folders/1xHsLC8ZDWJXm8f7fdXTcXr9hKszN3xpt?usp=sharing"><strong>Supplementary Data 4.</strong> </a>&nbsp;Transcriptional profiles for all genes in each cell type.</p> <p>&nbsp;</p> <p><a href="https://drive.google.com/drive/folders/1xHsLC8ZDWJXm8f7fdXTcXr9hKszN3xpt?usp=sharing"><strong>Supplementary Data 5.</strong> </a>&nbsp;Networks used in the analyses presented in Figs. 5 and 6.</p> <p>&nbsp;</p> <p><a href="https://drive.google.com/drive/folders/1xHsLC8ZDWJXm8f7fdXTcXr9hKszN3xpt?usp=sharing"><strong>Supplementary Data 6.</strong> </a>&nbsp;Transcriptional analysis of human astrovirus 1 infection in ileum organoids.</p>