Toy dataset for metaGEM documentation (Gut v1)

<p>This dataset was generated to test and benchmark the <a href="https://github.com/franciscozorrilla/metaBAGpipes">metaGEM</a> workflow.</p> <p>The 100 bp illumina WGS reads consist of ~10% subsets of 3 paired end sets of reads from the following <a href="https://www.nature.com/articles/nature12198">publication</a>:</p> <blockquote> <p>Karlsson, Fredrik H., et al. &ldquo;Gut Metagenome in European Women with Normal, Impaired and Diabetic Glucose Control.&rdquo;<em> Nature</em>, vol.498,no.7452,2013,pp.99&ndash;103., doi:10.1038/nature12198.</p> </blockquote> <p>SRA Accession code&nbsp;<a href="https://www.ncbi.nlm.nih.gov/sra?term=ERP002469">ERP002469</a>.</p> <p>The subsets were generated using the command line tool <a href="https://github.com/lh3/seqtk">seqtk</a>:</p> <pre><code class="language-bash">seqtk sample -s100 sample_X.fastq.gz 3000000 &gt; subset_X.fastq.gz</code></pre> <p>The sample names in the original publication used to generate the toy dataset are ERR260162 (sample1), ERR260173 (sample2), ERR260184 (sample3).</p>