Figure 3. A in Molecular phylogeny of hinge-beak shrimps (Decapoda: Caridea: Rhynchocinetes and Cinetorhynchus) and allies: a formal test of familiar and generic monophyly using a multilocus phylogeny

Figure 3. A, one-phase simultaneous alignment and tree estimation (SATé-II) analysis of maximum likelihood (ML) for representatives of the superfamily Nematocarcinoidea using two nuclear genes. B, two-phase phylogenetic analysis of Bayesian inference (BI) using two nuclear genes for representatives of the superfamily Nematocarcinoidea. The two phylogenetic trees resulted from the combined analysis of Histone (H3) and Enolase gene fragments of Rhynchocinetes (seven taxa and eight terminals), Cinetorhynchus (five taxa and 12 terminals), Lipkius (one taxon and two terminals), Nematocarcinus (three taxa), Eugonatonotus (one taxon), and outgroups. In (B), the general topology of the trees obtained from two-phase ML and BI analyses was the same. In (A), the numbers above or below the branches represent the bootstrap values obtained from the ML analysis in SATé-II. In (B), numbers above or below the branches represent the posterior probabilities from the BI analysis in MrBayes and bootstrap values obtained from the ML analyses in TREEFINDER (ML/BI).