Gene family data from the PhyloGenes (release version 4.0, phylogenes.org)

<p>The data files were generated&nbsp;from the PhyloGenes 4.0 release (see release notes&nbsp;<a href="https://conf.arabidopsis.org/display/PHGSUP/About+PhyloGenes">here</a>).</p> <p>About the&nbsp;two zip&nbsp;files:&nbsp;</p> <p>1. phyloXML.zip (these are different and updated from the immediately preceding PhyloGenes 3.2 release)</p> <p>PhyloGenes gene family trees in PhyloXML format, one file per family (e.g. &lt;family_ID&gt;.xml).</p> <p>The following information is provided for each node of a tree:<br> 1) leaf node:<br> branch length<br> name &lt;gene_id&gt;<br> taxonomy scientific_name<br> sequence accession &lt;UniProt ID&gt;</p> <p>2) non-leaf&nbsp;node:<br> branch length<br> events &lt;duplication or speciation&gt;</p> <p><br> 2. CSV.zip</p> <p>Functional information of family members in CSV format, one file per family (e.g. &lt;family_ID&gt;.csv).&nbsp;</p> <p>A CSV file includes the following columns:<br> Uniprot ID<br> Gene &lt;Gene name. If none then Gene ID&gt;<br> Gene ID<br> Gene name<br> Organism<br> Subfamily name</p> <p>The columns displayed after&nbsp;&#39;Subfamily name&#39;, if any, are GO annotations. Each column is a GO molecular function or biological process term that is annotated to at least one member of the gene family AND the annotation is supported by an experimental evidence (indicated by &#39;EXP&#39;) or phylogenetic inference (indicated by &#39;IBA&#39;). A &#39;0&#39; indicates absence of either annotations.</p>