KMCP Manuscript Data

<p># KMCP: accurate metagenomic profiling of both prokaryotic and viral populations by pseudo-mapping</p> <p>## 1.code-and-documents</p> <p>This directory contains the source code, executable binaries, and documents of KMCP,<br> which are also hosted at Github: https://github.com/shenwei356/kmcp .</p> <p>Databases, usage, and tutorials of KMCP are also available at https://bioinf.shenwei.me/kmcp/.</p> <p>- [Installation](https://bioinf.shenwei.me/kmcp/download)<br> - [Databases](https://bioinf.shenwei.me/kmcp/database)<br> - Tutorials<br> &nbsp; &nbsp; - [Taxonomic profiling](https://bioinf.shenwei.me/kmcp/tutorial/profiling)<br> &nbsp; &nbsp; - [Sequence and genome searching](https://bioinf.shenwei.me/kmcp/tutorial/searching)<br> - [Usage](https://bioinf.shenwei.me/kmcp/usage)<br> - [Benchmarks](https://bioinf.shenwei.me/kmcp/benchmark)<br> - [FAQs](https://bioinf.shenwei.me/kmcp/faq)</p> <p>## 2.databases</p> <p>This directory contains the building steps and reference genome accessions for<br> KMCP databases used in the manuscript.</p> <p>&nbsp; &nbsp; cami2 &nbsp; &nbsp; Databases used in benchmarks on CAMI2 mouse gut datasets<br> &nbsp; &nbsp; kmcp &nbsp; &nbsp; &nbsp;Databases used in other benchmarks<br> &nbsp; &nbsp;&nbsp;<br> ## 3.figures</p> <p>Each subdirectory contains steps to run the benchmark (`README.md`), steps for plotting (`README-plot.md`),<br> benchmark results, and figures.<br> &nbsp;</p>