Predicting and modeling protein-protein interactions in E. coli envelopome

<p>Structural models and Supplementary data described in the reference:</p> <p>Deep learning-driven insights into super protein complexes for outer membrane protein biogenesis in bacteria.</p> <p>Mu Gao, Davi Nakajima An, and Jeffrey Skolnick<em>. eLife</em>, 2022. <strong>11</strong>: p. e82885.</p> <p>List of files:</p> <ul> <li>af2c_fea_220331.tar -- A tarball of input features of full E coli proteome to AF2Complex version 1.3.0. Feature files are pickled and gzipped, which AF2Complex v1.3 takes as input directly.</li> </ul> <p>Results of an application to E coli envelopome on four query proteins from the outer membrane biogenesis pathway.</p> <ul> <li>Supplementary Data.xlsx -- Virtual PPI screening results of PpiD, YfgM, SurA, and BamA.</li> <li>screening_top1_models.zip -- Compressed top 1 dimeric models of top hits from the PPI screening. Note that these models are unrelaxed.</li> <li>predicted structural models.zip -- Compressed structural models of supercomplexes formed in the OMP biogenesis pathway described in the reference.</li> </ul>