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CVPIA Predation Contact Point Study - 2019: Impacts of Artificial Light At Night in the Sacramento – San Joaquin Delta
The Central Valley Project Improvement Act (CVPIA) has led to the implementation of a Decision Support Model (DSM) to assist in the prioritization of CVPIA restoration actions. The fall-run Chinook salmon DSM depends on a coarse-resolution salmon life-cycle model to predict the population benefits of different restoration actions and scenarios. One critical element of the life-cycle model is how to incorporate predation mortality during the juvenile rearing and outmigration portion of the salmon life-cycle in the Sacramento-San Joaquin Delta. Of particular importance to potential restoration activities, is the predation mortality that occurs in proximity to, and as a result of contact points between predator and prey fishes. A recent Literature review and meta-analysis of potential contact points in the Sacramento-San Joaquin Delta identified artificial lighting at night (ALAN) and submerged aquatic vegetation (SAV) as two contact points that have been found to influence predation elsewhere and warrant further study in this river delta (Lehman et al. 2019). Other contact points identified in this review that may affect predation of fall-run Chinook salmon juveniles included water diversions, docks, piers, scour holes, and rip rap; however, the literature on predator prey interactions associated with these contact points is lacking (Lehman et al. 2019). These datasets cover two different experiments in the Sacramento-San Joaquin Delta during spring 2019 from April - June. One experiment focused on artificial illumination and was a paired control impact study where new artificial illumination sources were introduced into the ecosystem. The other experiment relied on existing physical contact points (SAV, docks, pilings, bridges, and diversions) and assessed predation risk as a function of proximity to these points. Both experiments used predation event recorders to quantify relative predation risk and the ALAN experiment used Adaptive Resolution Imaging Sonar (ARIS) t
Juvenile Salmonid Emigration Monitoring in the Stanislaus River at Caswell Memorial State Park, California, 2017-2025
Overview Operation of rotary screw traps on the lower Stanislaus River at Caswell Memorial State Park is part of the U.S Fish and Wildlife Service’s Anadromous Fish Restoration Program and Comprehensive Assessment and Monitoring Program under the National Marine Fisheries Service Reasonable and Prudent Alternatives actions and Central Valley Project Improvement Act. The primary objectives of the study are to collect data that can be used to estimate the passage of juvenile fall-run Chinook Salmon Oncorhynchus tshawytscha and to quantify the raw catch of steelhead Oncorhynchus mykiss. Secondary objectives of the trapping operations focus on collecting biological data on juvenile salmonids and gathering environmental data that will be used to develop models that correlate environmental parameters with salmonid size, temporal presence, abundance, and production. The data package contains seven datasets including: raw catch, trap operation, environmental, and trap efficiency data. Raw Catch – Chinook Dataset This dataset covers ALL Chinook Salmon captured by the rotary screw traps. This spreadsheet includes biological data on: 1) unmarked fall- and spring-run Chinook Salmon 2) recaptured marked fall-run (BBY OR "Pigment / Dye", Photonic Dye, Fin Clip, and VIE OR "Elastomer") Chinook Salmon utilized in trap efficiency trials. Raw Catch – Steelhead Dataset This dataset covers ALL steelhead captured by the rotary screw traps. All steelhead captured are unmarked and presumed to be natural origin steelhead. Raw Catch – ByCatch Dataset This dataset provides biological data on ALL catch (EXCLUDING Chinook Salmon or steelhead) captured by the rotary screw traps. All catch in this table is of natural origin. Trap Operations Dataset This dataset provides trap operation data for each trap visit. Specifically, it includes data on the visit type, trap functioning status, start and end sampling dates and times, total revolutions and instantaneous revolution speeds, livewell intake st
Multi-locus DNA metabarcoding of western spotted skunk diet in the McKenzie River Ranger District of the Willamette National Forest from 2017-2019
There are increasing concerns about the declining population trends of small mammalian carnivores around the world. Their conservation and management is often challenging due to limited knowledge about their ecology and natural history. To address one of these deficiencies for western spotted skunks (Spilogale gracilis), we investigated their diet in the Oregon Cascades of the Pacific Northwest during 2017 –2019. We collected 130 spotted skunk scats opportunistically and with detection dog teams and identified prey items using DNA metabarcoding and mechanical sorting. Western spotted skunk diet consisted of invertebrates such as wasps, millipedes, and gastropods, vertebrates such as small mammals, amphibians, and birds, and plants such as Gaultheria, Rubus, and Vaccinium. Diet also consisted of items such as black-tailed deer that were likely scavenged. Comparison in diet by season revealed that spotted skunks consumed more insects during the dry season (June –August), particularly wasps (75% of scats in the dry season), and marginally more mammals during the wet season(September –May). We observed similar diet in areas with no record of human disturbance and areas with a history of logging at most spatial scales, but scats collected in areas with older forest within a skunk’s home range (1 km buffer) were more likely to contain insects. Western spotted skunks provide food web linkages between aquatic, terrestrial, and arboreal systems and serve functional roles of seed dispersal and scavenging. Due to their diverse diet and prey-switching, western spotted skunks may dampen the effects of irruptions of prey, such as wasps during dry springs and summers. By studying the natural history of western spotted skunks in the Pacific Northwest forests while they are still abundant, we provide key information necessary to achieve the conservation goal of keeping this common species common.
Raw microclimate data from plots at burned areas from the 2020 Holiday Farm fire in the Andrews Experimental Forest and Hagan Block, 2022-2024
This dataset includes a suite of microclimate sensor data from areas burned by the 2020 Holiday Farm fire within the McKenzie River basin. A total of 42 microclimate sensor suites were installed in July and August of 2022 distributed across RS01, RS08, RS15, WS02, WS09, WS01, HGBK. All sensor locations are within the Holiday Farm Fire footprint and within Permanent Sample Plots (PSPs). An additional sensor was placed within the Primary meteorological station (PRIMET) of the HJ Andrews Experimental Forest for comparison and calibration between open-air measurements. Sites are stratified across three treatment variables including 1) fire severity: high or low; 2) management: managed or unmanaged; 3) water balance: moister or drier topographic positions. This resulted in eight treatment blocks, each with 5 sensor suite replicates. Each microclimate site includes a suite of measurements: Hobo temperature and relative humidity sensor installed at 1.5m within a gill shield (recording at 30 minute interval), one TOMST TMS-4 temperature and soil moisture sensor was located within 1 m of plot center (recording at 15 minute interval). The TOMST sensors include air temperature sensors at 15cm, 2cm, and soil temperature at -6cm in soil near-surface. Soil moisture is measured across the ~10cm near surface zone.
Soil moisture and soil temperature from Benchmark Stations at the HJ Andrews Experimental Forest, 1987 to present
A three-level hydro-climatological network for data monitoring was established in 1994. The networks at each level are nested to form a coordinated program of data acquisition and measurement. A future vision of linking the benchmark meteorological stations with regional weather stations to expand the future scope of studies was also considered in designing this network. The first-level in this top-down approach consists of Benchmark Meteorological Stations (BMS) and Benchmark Stream Stations. The BMS are designed to represent the environment across the Andrews. These stations are intended to provide complete, long-term, high temporal resolution, meso-scale hydroclimatological data. The location of the BMS network is based on factors such as elevation, aspect, vegetation gradients, and accessibility. Collected meteorological parameters are generally standardized across the BMS as well as methods and instrumentation. Secondary Meteorological Stations also follow standardized methods and serve similar purposes but are somewhat limited in meteorological parameters collected. The Primary Meteorological Station (PRIMET), Central Meteorological Station (CENMET), Upper Lookout Meteorological Station (UPLMET), and Vanilla Leaf Meteorological Station (VANMET) are the four Benchmark Stations, Climatic Station at Watershed 2 (CS2MET) and the Hi-15 Meteorological Station (H15MET) are Secondary Stations. These soil parameters were previously part of database code MS001, but were separated out into their own database in 2024.
Wind speed and direction data from benchmark stations at the HJ Andrews Experimental Forest, 1973 to present
A three-level hydro-climatological network for data monitoring was established in 1994. The networks at each level are nested to form a coordinated program of data acquisition and measurement. A future vision of linking the benchmark meteorological stations with regional weather stations to expand the future scope of studies was also considered in designing this network. The first-level in this top-down approach consists of Benchmark Meteorological Stations (BMS) and Benchmark Stream Stations. The BMS are designed to represent the environment across the Andrews. These stations are intended to provide complete, long-term, high temporal resolution, meso-scale hydroclimatological data. The location of the BMS network is based on factors such as elevation, aspect, vegetation gradients, and accessibility. Collected meteorological parameters are generally standardized across the BMS as well as methods and instrumentation. Secondary Meteorological Stations also follow standardized methods and serve similar purposes but are somewhat limited in meteorological parameters collected. The Primary Meteorological Station (PRIMET), Central Meteorological Station (CENMET), Upper Lookout Meteorological Station (UPLMET), and Vanilla Leaf Meteorological Station (VANMET) are the four Benchmark Stations, Climatic Station at Watershed 2 (CS2MET) and the Hi-15 Meteorological Station (H15MET) are Secondary Stations. These wind parameters were previously part of database code MS001, but were separated out into their own database in 2024.
Solar radiation data from benchmark stations at the HJ Andrews Experimental Forest, 1973 to present
A three-level hydro-climatological network for data monitoring was established in 1994. The networks at each level are nested to form a coordinated program of data acquisition and measurement. A future vision of linking the benchmark meteorological stations with regional weather stations to expand the future scope of studies was also considered in designing this network. The first-level in this top-down approach consists of Benchmark Meteorological Stations (BMS) and Benchmark Stream Stations. The BMS are designed to represent the environment across the Andrews. These stations are intended to provide complete, long-term, high temporal resolution, meso-scale hydroclimatological data. The location of the BMS network is based on factors such as elevation, aspect, vegetation gradients, and accessibility. Collected meteorological parameters are generally standardized across the BMS as well as methods and instrumentation. Secondary Meteorological Stations also follow standardized methods and serve similar purposes but are somewhat limited in meteorological parameters collected. The Primary Meteorological Station (PRIMET), Central Meteorological Station (CENMET), Upper Lookout Meteorological Station (UPLMET), and Vanilla Leaf Meteorological Station (VANMET) are the four Benchmark Stations, Climatic Station at Watershed 2 (CS2MET), and the Hi-15 Meteorological Station (H15MET) are Secondary Stations. In 2006, an additional Secondary Station was added at Watershed 7 (WS7MET) These solar radiation parameters were previously part of database code MS001, but were separated out into their own database in 2024 and the entities and attributes were reorganized in 2025 into shortwave, longwave, net radiation and PAR. The shortwave and longwave entities include both incoming and outgoing radiation where measured (see probe_code and method_code).
Drought experiment on aquatic vertebrate populations in McRae Creek, HJ Andrews Experimental Forest, 2022
Three distinct reaches in McRae Creek west tributary (MCTW) within the HJ Andrews Experimental Forest in western Oregon were designated for manipulation and data collection. Manipulations included increasing the temperature (T), reducing streamflow (Q), and a reference (R reach). Population estimates of vertebrates, specifically Coastal Cutthroat Trout and Coastal Giant Salamander, were obtained using three-pass depletion methods in each reach. A Before-After-Control-Impact (BACI) design was implemented, distinguishing between the "Before" and "After" periods. "Before" surveys were conducted from July 18th to 20th, 2022, while "After" surveys occurred from September 8th to 9th, 2022. During the surveys, each species was identified, noting life stage, and relevant measurements were taken. For trout, these included the length from the snout to the tail fork (Length_Fork_Vent), the snout to the tail (Length_Tail), and weight. In the "Before" survey, all trout were tagged with elastomer tags: red for the T reach, yellow for the Q reach, and orange for the R reach. Trout larger than 80 mm also received PIT tags in their abdominal cavities. Salamanders were measured similarly, not elastomer or PIT tags were applied. During the "After" survey, no new elastomer or PIT tags were inserted; only previously tagged fish were recorded. Additionally, stream cross-sections were surveyed every 5 meters to document stream dimensions. Recorded data included the location, reach, sample date, BACI status, and distance downstream from the upstream cross-section (0 meters). Measurements at each cross-section included wetted width, bankfull width, and depths at five evenly spaced points. Furthermore, pools were identified and measured in each reach, noting the maximum pool depth, depth at the outflow, width, and length. Temperature sensors were installed in each reach, recording stream temperature every 15 minutes. Sensor locations were recorded as the distance downstream from the top of e
Solute dynamics in the hyporheic mesocosm in Watershed 1 at the H.J. Andrews Experimental Forest, 2019-2020
We investigated biogeochemistry along a 12-m hyporheic mesocosm that allowed for controlled testing of seasonal and spatial water quality changes along a flowpath with fixed geometry and constant flow rate. Water quality profiles of oxygen, carbon, and nitrogen were measured at 1-m intervals along the mesocosm over multiple seasons. dissolved oxygen (DO) and temperature profiles were monitored on 18 dates between May 2019 through August 2020. Grab samples to monitor profiles of carbon, nitrogen, and various other solutes along the mesocosm were collected in December 2019 and August 2020 to provide more comprehensive biogeochemical analyses at time points when the dissolved oxygen (DO) and temperature profiles were at or near the maximum seasonal differences. Mesocosm monitoring ceased abruptly due to the Holiday Farm Fire, which burned from September through October 2020, cutting off personnel access and electrical power to the mesocosm facility.
Interviews with members of the HJA Community during the Lookout Fire, HJ Andrews Experimental Forest, 2023
This dataset records the interview instrument, analytical codebook, and summary of results for the 2023 Lookout Fire Qualitative Interviews. Data was collected in 2023 in Corvallis, Oregon, and over Zoom. Members of the H. J. Andrews Experimental Forest (HJA) community (e.g., university faculty and administrative professionals, agency scientists and personnel, students, alumni and emeritus from the aforementioned communities) were interviewed between September 26th and November 8th 2023. At the time, the fire had largely stopped growing (no significant runs occurred during the interview period), but the fire was not fully contained and the fire severity was not yet known by the community. Data collection is complete. The interview included questions about emotional reactions to the Lookout Fire, current and foreseen impacts to research at the HJA, social relationships and the fire, naturalness of the fire, and climate change, climate anxiety, and the fire. Interviews were semi-structured; while interviews were guided by the interview protocol, conversation was allowed to proceed organically. In total, 40 respondents were interviewed. Interviews were transcribed verbatim and analyzed inductively and deductively. A finalized codebook was developed iteratively; the included codebook are the final codes used to analyze the full dataset. Interview transcripts and other potentially identifying information is not available to protect respondent confidentiality and anonymity. This dataset summarizes the key interview results.
Water chemistry in streams and precipitation samples in the HJ Andrews Experimental Forest, 2022-2023
Water samples have been collected for chemical analysis at various locations in the HJ Andrews Experimental Forest, starting in 2022. The database includes grab samples gathered approximately weekly in selected streams and bulk precipitation collected at the PRIMET meteorological station. Samples were analyzed for cations (Si4+, Ca2+, Mg2+, K+, and Na+) and anions (Cl- and SO42-).
Fish and Amphibians species list of the Andrews Experimental Forest, 1987 to present
This is a compilation of fish species currently known to be present within the H.J. Andrews Experimental Forest. Species were extracted from several different aquatic vertebrate studies over time. Taxonomy is updated as needed.
Long-term growth, mortality and regeneration of trees in permanent vegetation plots in the Pacific Northwest, 1910 to present
A network of more than 130 permanent vegetation plots provides long-term information on patterns and rates of forest succession in most of the major forest zones of the Pacific Northwest. The plot network extends from the coast to the Cascades in western Oregon and Washington and east to ponderosa pine forests in the Oregon Cascades. Most of the permanent plots were established during two intervals: from 1910 to 1948, and from 1970 to 1989. The earlier plots were established by U.S. Forest Service researchers to quantify timber growth in young stands of important commercial species and to help answer other applied forestry questions. The more recent period of plot establishment began under the Coniferous Forest Biome program of the International Biological Program during the 1970s, and continued under the Long-term Ecological Research program. A broader set of objectives motivated plot establishment since 1970, especially quantification of composition, structure, and population and ecosystem dynamics of natural forests. Plots have one of three spatial arrangements: (1) contiguous rectangles subjectively placed within an area of homogeneous forest; (2) circular plots subjectively placed within an area of homogeneous forest; and (3) circular plots systematically located on long transects to sample an entire watershed, ridge, or reserve. Rectangular study areas are mostly 1.0 ha or 0.4 ha (1.0 ac) in size (slope-corrected). Circular plots are 0.1 ha (0.247 ac), not corrected for slope. The tree stratum is the focus of work in closed-forest study areas. All trees larger than a minimum diameter (5 cm for most areas) are permanently tagged. Plots are censused every 5 or 6 years. Attributes measured or assessed at each census include tree diameter, tree vigor, and the condition of the crown and stem. The same attributes are recorded for trees (ingrowth) that have exceeded the minimum diameter since the previous census. In many plots tree locations are surveyed to provide a
Species interactions during succession in the western Cascade Range of Oregon, 1990 to present
The factors that contribute to plant species establishment and decline following disturbance determine the rates and patterns of successional change of a system. In this long-term field experiment, we test the commonly held assumption that competition for space or resources by dominant species determines the outcome of succession. Specifically, we examine the population- and community-level consequences of removing one or more potentially dominant species from the post-disturbance community after clearcut logging and burning of a mature/old-growth Douglas-fir forest. Experimental treatments include: (1) removal of early-seral annual, Senecio sylvaticus, or perennial, Epilobium angustifolium—or both—to test the influences of these early-seral dominants on subsequent community development; (2) removal of all species except Senecio or Epilobium, to test whether the decline of these early-seral dominants is driven by competitive displacement; or (3) removal of shade-tolerant forest species that dominate subsequent stages of succession—Rubus ursinus or Berberis nervosa plus Gaultheria shallon—to test the influences of these long-lived perennials on understory development. The experiment is a randomized block design comprising eight removal treatments plus a control replicated in each of 25 blocks. Removal (reduction in competition) is achieved by removing seedlings or vegetative stems annually from a treatment area of 2.5 x 2.5 m. Sample plots (1 x 1 m) centered within these are used to estimate cover of all vascular plant species and, for the first 8 yr of the experiment, stem density and height, facilitating estimates of above-ground biomass. Pre-harvest data were collected in 1990, logging/burning occurred in 1991, and removal treatments and post-treatment sampling were initiated in 1992. Six of the nine experimental treatments were terminated between 1996 and 1998, with loss of early-seral Senecio and Epilobium from the system. The remaining three treatments (removal
Meteorological data from benchmark stations at the HJ Andrews Experimental Forest, 1957 to present
A three-level hydro-climatological network for data monitoring was established in 1994. The networks at each level are nested to form a coordinated program of data acquisition and measurement. A future vision of linking the benchmark meteorological stations with regional weather stations to expand the future scope of studies was also considered in designing this network. The first-level in this top-down approach consists of Benchmark Meteorological Stations (BMS) and Benchmark Stream Stations. The BMS are designed to represent the environment across the Andrews. These stations are intended to provide complete, long-term, high temporal resolution, meso-scale hydroclimatological data. The location of the BMS network is based on factors such as elevation, aspect, vegetation gradients, and accessibility. Collected meteorological parameters are generally standardized across the BMS as well as methods and instrumentation. Secondary Meteorological Stations also follow standardized methods and serve similar purposes but are somewhat limited in meteorological parameters collected. The Primary Meteorological Station (PRIMET), Central Meteorological Station (CENMET), Upper Lookout Meteorological Station (UPLMET), and Vanilla Leaf Meteorological Station (VANMET) are the four Benchmark Stations, Climatic Station at Watershed 2 (CS2MET) and the Hi-15 Meteorological Station (H15MET) are Secondary Stations. Watershed 7 Meteorological Station (WS7MET) was instrumented in 2006 and serves as an additional Secondary Station. In 2024, entities/measurement parameters (precipitation, wind, solar, soil, and snow) from MS001 database were partitioned out into separate databases.
Cone production of upper slope conifers in the Cascade Range of Oregon and Washington, 1959 to 2022
Seed supply is a key feature of tree population dynamics, and seed production may be indicative of environmental and biological drivers. This study examines cone production in upper-slope, true fir-hemlock forests of the Pacific Northwest, starting in 1959 to the present. Annual surveys of cone counts of Abies spp. (A. amabilis, A. concolor, A. grandis, A. lasiocarpa, A. magnifica, A. procera), Pinus spp. (P. engelmannii, P. lamberti, P. monticola), and Tsuga spp. (T mertsiana) have been conducted at sixty-one plots in 37 locations in nine national forests in Washington and Oregon (originally 10 national forests, but Mt. Baker and Snoqualimie were combined). At each site, a visual count is made of cone production in each of a number (20-30) trees in a stand of one tree species. At some plots, additional trees were added in the 1980s. Primary data include numbers of counts per tree per year, periodic measurements of tree diameter, and the names of the sites. These data illustrate the periodicity of cone production cycles, as well as longer trends associated with climate change and variability in the region.
Air and soil temperature data from the Reference Stand network at the Andrews Experimental Forest, 1971 to present
The current network of temperature measurement sites are designed to represent spatial variability of air and soil temperature in rugged mountain topography, and serve as second-level stations to capture specific microclimate temperatures in conjunction with a network of Benchmark Meteorological Stations (MS001). The air and soil thermograph network has been reduced from the historical network of 37 sites originally established. Currently there are 10 measurement sites with two of these sites measuring relative humidity in addition to air and soil temperature. An original network of 19 sites (RS01-RS19) were established during the International Biome Program in the early 1970's. Emphasis on phenology, plant moisture stress, and leaf nutrient content led to extending this network of air and soil temperature measurement. A plant community classification system (Dyrness et al., 1971) was used as a primary means of stratification, and a set of permanent vegetation plots (Reference Stands) was installed to represent forest communities with distinct vegetation and hypothesized different environments (Dyrness et al., 1974). A thermograph network was installed within the reference stands in the early 1970's (Zobel et al., 1974), and vegetation standing crop, tree growth and mortality, and plant succession were also measured. The majority of these sites were established to monitor micro-meteorological data under the canopy. The purpose of this network was to provide air and soil temperature data for modeling photosynthesis, respiration, phenology, and decomposition, and to measure environmental gradients.
Snow depth and snow water equivalent measurements along a road course and historic snow course in the Andrews Experimental Forest, 1978 to present
With an increase in emphasis on monitoring climate change impacts and change in the form of precipitation at HJ Andrews Experimental Forest, snow data collection within our climate monitoring program, a snow course to document depths of snow was designed around a dispersed sampling scheme rather than a point intensive scheme as previously employed in the historic Reference Stand snow course. Primary objectives are to document the presence/absence of snow, snow depth, and time of melt-off. Snow depths are verified using stakes placed near the road to allow for routine and frequent observation. Stakes are placed at different locations, elevations and aspects in paired forested/open sites. Time-lapse cameras were deployed at all the stakes to allow for daily measurements beginning in fall 2014. Truthing of points with snow core sampling for snow moisture content (snow water equivalent) is done when possible, usually 1-2 times per year. Cameras are set to take 3 readings per day (09:00, 12:00, 15:00 PST). One snow depth and coverage is extracted from the images per stake per day.
Stream and air temperature data from stream gages and stream confluences in the Andrews Experimental Forest, 1950 to present
Stream and air temperature are measured in tandem at stream gauging stations and other selected locations and stream confluences within the Andrews Forest. Air temperature is generally measured over the stream or alongside. Currently, mean, max and min water and air temperature data are collected every 5 minutes at the gauging stations and instantaneous temperatures every 15 minutes at all other sites. Most measurements were collected hourly commencing in the later 1990s, but a few sites have daily data beginning in the late 1970s. Historic data collected 1949 to 1981 at Lookout Creek stream gauge are included with the daily summary data. Other Andrews Forest related databases: Long term air temperature data from the reference and benchmark climate stations are also available in MS001. Previous high resolution stream temperature data at some of the small watershed stream gages are available in HT001 and stream temperature data throughout the Andrews Forest stream networks during several years are available in HT002.
Aquatic Vertebrate Population Study in Mack Creek, Andrews Experimental Forest, 1987 to present
Populations of Coastal Cutthroat trout (Oncorhynchus clarkii clarkii) in two standard reaches of Mack Creek in the H.J. Andrews Experimental Forest have been monitored since 1987. Monitoring of Coastal Giant Salamanders, Dicamptodon tenebrosus began in 1993. The two standard reaches are in a section of clearcut forest (ca. 1963) and an upstream 500 year old coniferous forest. Sub-reaches are sampled with 2-pass electrofishing, and all captured vertebrates are measured and weighed. Additionally, a set of channel measurements are taken with each sampling. This study constitutes one of the longest continuous records of salmonid populations on record.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.