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264 results for “3D Reconstruction”
Figure 1 from: Kissling WD, Seijmonsbergen AC, Foppen RPB, Bouten W (2017) eEcoLiDAR, eScience infrastructure for ecological applications of LiDAR point clouds: reconstructing the 3D ecosystem structure for animals at regional to continental scales. Research Ideas and Outcomes 3: e14939. https://doi.org/10.3897/rio.3.e14939
Figure 1 - The vertical and horizontal distribution of plants influences habitat structure and 3D characteristics of vegetation for animals. Illustrated are examples for (a) forests, (b) agricultural and open landscapes, and (c) reedbeds and marshlands. The height, openness and density of vegetation as well as specific habitat features (e.g. tree species, hedges etc.) are key aspects of animal habitat and space use.
Figures 29-31 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 29-31 - Bembidion alekseevi sp. n., light microscopic images of the holotype. 29 left dorso-lateral aspect 30 right ventro-lateral aspect 31 general view of the amber piece; the position of the fossil is marked by an arrow.
Figures 27-28 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 27-28 - Fossil Bembidion Latreille, 1802, reconstruction of the external shape in dorsal view. 27 B. bukejsi sp. n. 28 B. alekseevi sp. n.
Figures 32-34 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 32-34 - Bembidion alekseevi sp. n., volume rendering of the holotype. 32 dorsal aspect 33 right lateral aspect 34 ventral aspect.
Figures 18-26 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 18-26 - Aedeagal median lobes and endophallic structures of recent Bembidiina (18–25) and the fossil Bembidion bukejsi sp. n. (26), left lateral view. 18 Hoquedela k. kirschenhoferi Müller-Motzfeld, 1988 19 Bembidion (Phyla) tethys Netolitzky, 1926 20 B. (Plataphus) f. fellmanni Mannerheim, 1823 21 B. (Melomalus) altaicum Gebler, 1833 22 B. (Peryphophila) eurydice Andrewes, 1926 23 B. (Andrewesa) patris Schmidt, 2010 24 B. (Bracteon) lapponicum Zetterstedt, 1828 25 B. (Odontium) striatum Fabricius, 1792 26 B. (Eodontium) bukejsi subgen. n., sp. n. (Fig. 26a, volume rendering with highlighted structures, see also Fig. 14; Fig. 26b, schematic reconstruction of putative organization of endophallic structures). Scale bar: 2.2 mm. Abbreviations: bsc = brush sclerite; bsc-fd-av = apico-ventral prolongation of the brush sclerite; csc = central sclerite; csc-ll = left lobe of central sclerite; csc-rl = right lobe of central sclerite; df = dorsal field; dpl = dorsal plate; fl = flagellum of the central fold system; N = N-sclerite (Maddison 2012); of = ostidial flag.
Figures 14-17 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 14-17 - Bembidion bukejsi sp. n., holotype, visualization of endophallic structures using micro-CT. 14 volume rendering of the aedeagal median lobe with sclerotized endophallic structures highlighted in colors 15–16 parts of transverse sections through the abdomen with aedeagus (for position of slices see Fig. 14) 17 sclerotized endophallic structures separated and highlighted in colors using serial sectioning (a-d, left lateral aspect; e, right lateral aspect; f-g, dorsal aspect). Colour coding: beige = internal fold originating from the brush sclerite; green = central sclerite; khaki = dorsal field; light blue = dorsal plate; marine blue = ostidial flag; red = central fold system; white = unknown sclerite; yellow = brush sclerite. Abbreviations: bsc = brush sclerite; bsc-fd-i = internal fold originating from the brush sclerite; bsc-fd-v = ventral prolongation of the brush sclerite; cfd = central folding system; csc = central sclerite; dpl = dorsal plate; mlw = wall of median lobe; scu = unknown sclerite; st = sternite.
Figures 9-13 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 9-13 - Bembidion bukejsi sp. n., holotype, volume rendering of selected body parts 9 caudal aspect of body 10 tarsomeres and distal portion of tibia of right proleg. 11 frontal section of body (ventral aspect) showing position of the abdominal segment IX which surrounds the aedeagus 12 abdominal segment IX and aedeagal median lobe, left lateral aspect 13 sagittal section of aedeagal median lobe, left lateral aspect. Abbreviations: antc = antecosta; bow-l = left wall of basal orfice; bsc-fd = folding structures originating from the endophallic brush sclerite; cfd = central folding system of endophallus; csc = central sclerite of endophallus (left lobe); dpl = dorsal plate of endophallus; mla = aedeagal median lobe apex; mlb = aedeagal median lobe base; mlw-d = dorsal wall of median lobe; mlw-v = ventral wall of median lobe; mtg IX = mediotergite IX; omp = ostial microtrichial patch; pm-l = left paramere (basal portion).
Figures 6-8 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 6-8 - Bembidion bukejsi sp. n., volume rendering of the holotype. 6 dorsal aspect 7 left lateral aspect 8 ventral aspect.
Figures 3-5 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 3-5 - Bembidion bukejsi sp. n., light microscopic images of the holotype. 3 anterior portion of body, dorsal aspect 4 anterior portion of body, ventral aspect 5 left lateral aspect.
Figures 35-36 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 35-36 - Bembidion alekseevi sp. n., volume rendering of the head capsule of the holotype using different grayscale thresholds, dorsal aspect. The arrow in Fig. 36 point to the prominent ridge on internal side of the anterior supraorbital pore, which is characteristic for representatives of the Bembidion subgenus Eupetedromus.
Figures 1-2 from: Schmidt J, Michalik P (2017) The ground beetle genus Bembidion Latreille in Baltic amber: Review of preserved specimens and first 3D reconstruction of endophallic structures using X-ray microscopy (Coleoptera, Carabidae, Bembidiini). ZooKeys 662: 101-126. https://doi.org/10.3897/zookeys.662.12124
Figures 1-2 - Bembidion bukejsi sp. n., light microscopic images of the holotype. 1 dorsal aspect 2 general view of the fossil with contours of the amber piece.
Fig. 4. Example 3D in Reconstructed masticatory biomechanics of Peligrotherium tropicalis, a non-therian mammal from the Paleocene of Argentina
Fig. 4. Example 3D renderings of the bifulcral mandibular leverage parameters used in this analysis. A. Example of bifulcral lever arms corresponding to the working-side superficial masseter (SM-W) shown in a semi-transparent hemimandible of Canis familiaris Linnaeus, 1758; the muscular resultant vector is shown as a red arrow, with corresponding bite force vectors (yellow arrows) and working-side joint force vectors (purple arrows) shown for three positions on the lower postcanine tooth row. As can be seen, the in-lever lengths around the bite point fulcra (used in the calculation of joint force) increase significantly mesially. In labial (A1) and oblique (A2) views. B. Example of the varying condylar planes (CP) and bite planes (BP) used in the 3D bifulcral analysis, shown in Diceros bicornis (Linnaeus, 1758) for a bite point on the lower first molar. The mandible is shown in semi-transparent gray, while the working- and balancing-side origin surfaces for the deep masseter muscles on the skull are shown bilaterally in solid pink; similarly, the isolated origin surfaces of the medial pterygoids are shown in solid green. The muscular lines of action (LOA) for these four muscles are also shown as solid tubes, while transparent triangles demonstrate the orientations of the CP and BP for the corresponding muscle. In superior (B1) and oblique (B2) views. Not to scale. Abbreviations: BS, balancing-side; BV, bite vertex; ILBP-W, in-lever of the bite plane on the working-side; SM-W, superficial masseter working-side; WS, working-side.
3D Reconstructive model of the House of the Greek Epigrams in Pompeii
<p>The reconstructive model can be viewed at: https://models.darklab.lu.se/Pompeii/EpigrammiGreci/3D_Reconstruction/</p> <p>For any use of the content (such as screenshots), please ensure to cite the source correctly using the automatically generated citation provided by Zenodo. Additionally, you must obtain permission from the Parco Archeologico di Pompeii for the use of the model and of any related media (such as screenshots).</p> <p>The methodology employed in the reconstruction of the model is delineated in Chapter 5 of the following work: Campanaro, D. M. (2023). <em>Illumination matters. Revisiting the Roman house in a new light</em>. [Doctoral Thesis (compilation), Classical archaeology and ancient history]. MediaTryck Lund. https://lucris.lub.lu.se/ws/portalfiles/portal/144878976/Danilo_Marco_Campanaro_WEBB.pdf</p> <p>When utilising the model or any media derived therefrom (e.g. screenshots), it is requisite to cite this work.</p>
Figure 5 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 5 - Hydroschendyla submarina, selection of micrographs of transverse sections through the head from anterior to posterior. A Section through the anterior head part, showing the mandibulo-tentorial complex at the level of the epipharyngeal bar B Section through the mandibulo-tentorial complex (right side of head) at the level of the junction between epipharyngeal bar and supramandibular arch. C Section through the mandibulo-tentorial complex (left side of head) between the levels shown in B and D. D Section through posterior part of tentorium and mandible (right side of head) at the level of the mesial interconnection of the mandibles by muscle 26. Numbers refer to muscles as listed in Table 1. Abbreviations: br brain cl clypeus, cl-ecr clypeo-epicranial muscle eb epipharyngeal bar of tentorium, ecr epicranium hy hypopharynx lbs labral sidepiece mb mandibular base md mandible mxI first maxilla ph pharynx pp posterior process of tentorium sma supramandibular arch of tentorium sog subesophageal ganglion tb transverse bar of tentorium tmxII telopodite of second maxilla.
Figure 4 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 4 - Dicellophilus carniolensis, selection of micrographs of transverse sections through the head from anterior to posterior. A Section through anterior head part in front of the mandibulo-tentorial complex, highlighting muscles arising from the clypeus B Section through the mandibulo-tentorial complex (left side of head) slightly anterior to C; in the inset (scale: 25 µm) the area of flexibility (arrow) between mandibular gnathal lobe and base is magnified. C Section through the mandibulo-tentorial complex (right side of head) at the level of the cuticular tendon (arrow in inset; scale: 25 µm) of the mandibular gnathal lobe. D Section through posterior part of tentorium and mandible (left side of head), showing collagenous tendon system and mandibular septum. Numbers refer to muscles as listed in Table 1. Abbreviations: br brain cl-ecr clypeo-epricranial muscle cl-ep clypeo-epipharyngeal muscle cl-lbr clypeo-labral muscle ct collagenous tendon, ecr epicranium hb hypopharyngeal bar of tentorium lbs labral sidepiece mb mandibular base md mandible mgl mandibular gnathal lobe, mxI first maxilla ph pharynx pp posterior process of tentorium, se septum of mandibular gnathal pouch sma supramandibular arch of tentorium st stilus tb transverse bar of tentorium tmxII telopodite of second maxilla.
Figure 3C from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 3C - Hydroschendyla submarina, surface model of the left mandibulo-tentorial complex in situ. Click on the image to activate the interactive 3D-mode. (download 3D model)
Figure 3 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 3 - Hydroschendyla submarina, surface model of the left mandibulo-tentorial complex. A Medio-frontal view, tentorial muscles 14, 18, and 22b removed as well as hypopharyngeal muscle 25; arrow points to condyle of mandibular gnathal lobe B Oblique dorso-frontal view, extrinsic mandibular muscles 3, 5, and 13 removed as well as tentorial muscles 18 and 22b. Numbers refer to muscles as listed in Table 1. Abbreviations: md mandible tt tentorium.
Figure 2C from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 2C - Dicellophilus carniolensis, surface model of the left mandibulo-tentorial complex in situ. Click on the image to activate the interactive 3D-mode. (download 3D model)
Figure 1 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 1 - Surface model of the mandibulo-tentorial complex, dorsal view onto the left complex within the head capsule (anterior is top). A Dicellophilus carniolensis B Hydroschendyla submarina, tentorial muscles 18 and 22b removed. Numbers refer to muscles as listed in Table 1. Abbreviations: an antenna cl clypeus, ecr epicranium, md mandible, tt tentorium.
Figure 2 from: Koch M, Schulz J, Edgecombe GD (2015) Tentorial mobility in centipedes (Chilopoda) revisited: 3D reconstruction of the mandibulo-tentorial musculature of Geophilomorpha. In: Tuf IH, Tajovský K (Eds) Proceedings of the 16th International Congress of Myriapodology, Olomouc, Czech Republic. ZooKeys 510: 243-267. https://doi.org/10.3897/zookeys.510.8840
Figure 2 - Dicellophilus carniolensis, surface model of the left mandibulo-tentorial complex. A Medio-frontal view, tentorial muscle 14 removed; arrow points to condyle of mandibular gnathal lobe B Oblique dorso-frontal view, extrinsic mandibular muscles removed. Numbers refer to muscles as listed in Table 1. Abbreviations: md mandible tt tentorium.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.