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29,145 results for “Association”
The first annotated genome assembly of Macrophomina tecta associated with charcoal rot of sorghum
<p>Raw reads of Macrophomina tecta were obtained from Nanopore, Illumina, and NextSeq (RNA). Files with information about the genome annotation, functional prediction, repeats, effectors and orthologous genes are included. </p>
Globally-gridded data for manuscript: Global stocks and capacity of mineral-associated soil organic carbon
<p>Supporting globally-gridded data products for manuscript: Georgiou K., Jackson R. B., Vindušková O., Abramoff R. Z., Ahlström A., Feng W., Harden J. W., Pellegrini A. F. A., Polley H. W., Soong J. L., Riley W. J., Torn M. S. Global stocks and capacity of mineral-associated soil organic carbon. <em>Nature Communications</em>, 2022.</p> <p>We leveraged data from a global synthesis of soil fractionation measurements (DOI: 10.5281/zenodo.5987415) along with ancillary data on climate, vegetation, and soil characteristics to produce spatially-explicit global estimates of mineral-associated soil organic carbon stocks (MOC) and mineralogical carbon capacity (MOC<sub>max</sub>) in non-permafrost, non-desert mineral soils. Globally-gridded datasets are given in kgC/m<sup>2</sup> for topsoil (0-30cm) and subsoil (30-100cm) at 0.5 degree by 0.5 degree spatial resolution.</p>
Synthesis data for manuscript: Global stocks and capacity of mineral-associated soil organic carbon
<p>Supporting synthesis data for manuscript: Georgiou K., Jackson R. B., Vindušková O., Abramoff R. Z., Ahlström A., Feng W., Harden J. W., Pellegrini A. F. A., Polley H. W., Soong J. L., Riley W. J., Torn M. S. Global stocks and capacity of mineral-associated soil organic carbon. <em>Nature Communications</em>, 2022.</p> <p>We performed an observational synthesis of soil fractionation data constituting 1,144 globally-distributed soil profiles from 78 studies that reported fractionation and bulk measurements of organic carbon across depths. This dataset includes measurements of mineral-associated, particulate, and bulk soil organic carbon, as well as ancillary data on edaphic, climate, and vegetation characteristics. We also performed a separate observational synthesis of soil carbon accrual from manipulation and chronosequence studies, which included changes in carbon stocks or concentrations, bulk density, experimental duration, and edaphic properties. This latter synthesis included 103 observations from 34 studies that spanned crop, pasture, grassland, and forest ecosystems across climates and soil types. Further details for both syntheses can be found in the methods and supplementary materials of the associated manuscript.</p>
Kimbe Bay Current Meter Data associated with Hydrodynamics Paper
<p>These data are the current meter data from each site and sea surface temperature data used in the paper " Contrasting hydrodynamic regimes of submerged pinnacle and emergent coral reefs". </p>
Combined unsupervised and semi-automated supervised analysis of flow cytometry data reveals cellular fingerprint associated with newly diagnosed pediatric type 1 diabetes
<p>Type 1 diabetes is a chronic autoimmune disease resulting in an immune-mediated loss of pancreatic β-cells; however, an unbiased and reproducible profiling of type 1 diabetes-specific circulating immunome at disease onset has yet to be explored. In this study, fresh whole blood was collected from a pediatric cohort of 107 patients with new-onset type 1 diabetes, 85 relatives of patients with type 1 diabetes with 0-1 islet autoantibodies, 58 patients with celiac disease or autoimmune thyroiditis and 76 healthy controls. Up to 6 mL of blood was collected from each subject into a VACUETTE® TUBE 6 ml ACD-B (Greiner). Fresh whole blood underwent red blood cell lysis, was washed and stained with specific monoclonal antibodies. Fresh whole blood samples were stained with five panels of antibodies labelled as T cells, T&NK cells, B cells, Tregs and DCs/monos encompassing main subsets of T cells, NK cells, B cells, Tregs, DCs and monocytes detected using 26 surface markers and the intracellular marker forkhead box P3 (FoxP3); for the Treg panel, intracellular staining was performed after fixation and permeabilization. Cells were acquired on a BD FACSCanto-II flow cytometer equipped with FACSDiva software (Becton Dickinson, Franklin Lakes, NJ). </p>
Data associated with the publication "Interannual variability in the Australian carbon cycle over 2015-2019, based on assimilation of OCO-2 satellite data".
<p>This dataset refers to the publication "Interannual variability in the Australian carbon cycle over 2015-2019, based on assimilation of OCO-2 satellite data". https://doi.org/10.5194/acp-2022-15.</p> <p> </p>
Optical Cluster set definitions associated with CERTO project deliverable 4.2
<p>This set of files consists of pickle and csv files that describe the optical water class sets computed as part of the CERTO project ( https://certo-project.org ). A written description and discussion of these clusters is provided in Deliverable 4.2 from the CERTO project.</p>
Data for the Manuscripts of "Variability of Jakarta Rain-Rate Characteristics Associated with the Madden-Julian Oscillation and Topography" and "Subdaily Rain-Rate Properties in Western Java Analyzed Using C-Band Doppler Radar"
<p>This archive consists of the post-processed data of C-Band Doppler Radar (CDR) over Jakarta and surrounding regions for the studies of "Variability of Jakarta Rain-Rate Characteristics Associated with the Madden-Julian Oscillation and Topography" and "Subdaily Rain-Rate Properties in Western Java Analyzed Using C-Band Doppler Radar".</p> <p>The dataset is a gridded rainfall data derived from the local relationship of Z (reflectivity) from the CDR and rainfall (R) from stations. The derived rainfall data are in daily estimates from 2009 to 2012 with the format in NetCDF files.</p> <p>The CDR data were obtained from the projects “Hydrometeorological Array for Intraseasonal Variation-Monsoon Automonitoring (HARIMAU)” (JFY 2005-2009), and the Science Technology Research Partnership for Sustainable Development (SATREPS) “Maritime Continent Center of Excellence (MCCOE) (JFY 2009-2013) of the Japan Science and Technology Agency (JST)/Japan International Cooperation Agency(JICA) under a collaboration of the Agency for the Assessment and Application of Technology (BPPT)-Indonesia and Japan Agency for Marine-earth Science and Technology (JAMSTEC)-Japan.</p>
Datasets associated with the publication of the "satuRn" R package
<p>On this Zenodo link, we share the data that is required to reproduce all the analyses from our publication "satuRn: Scalable Analysis of differential Transcript Usage for bulk and single-cell RNA-sequencing applications".</p> <p>This repository includes input transcript-level expression matrices and metadata for all datasets, as well as intermediate results and final outputs of the respective DTU analyses. For a more elaborate description of the data, we refer to the companion GitHub for our publications; https://github.com/statOmics/satuRnPaper. Note that this is version 1.0.3 of the data (uploaded on 2022-07-08). If any changes were to be made to the datasets in the future, this will also be communicated on our companion GitHub page. </p>
GFDL hurricane model track data associated with "Dynamical downscaling projections of late 21st century U.S. landfalling hurricane activity"
<p>These data include North Atlantic tropical cyclone track and intensity for control and projected late 21st century simulation from the GFDL hurricane model used in a <em>Climatic</em> <em>Change</em> manuscript: </p> <p>Knutson, T., J. Sirutis, M. Bender, R. Tuleya, and B. Schenkel, 2022: Dynamical downscaling projections of late 21st century U.S. landfalling hurricane activity. <em>Clim. Change</em>, <strong>171</strong>, 1–23.<br> <br> A readme file included below describes the variables and format of the tropical cyclone track data. Questions about the dataset may be directed to Ben Schenkel (<a href="mailto:benschenkel@gmail.com">benschenkel@gmail.com</a>) and Tom Knutson (<a href="mailto:tom.knutson@noaa.gov">tom.knutson@noaa.gov</a>). </p>
Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022.
<p>Time series data of COVID-19 cases (rT-PCR-confirmed), hospitalisations (laboratory-confirmed), and hospital-associated deaths (laboratory confirmed) in South Africa, by imputed dates of symptom onset, from the start of the pandemic in March 2020 through April 2022. These data were used to estimate the time-varying reproduction number (R) in South Africa, as described in https://www.medrxiv.org/content/10.1101/2022.07.22.22277932v1.full.</p>
Figure Sets and Data Associated with AJ Publication: "NICMOS Kernel-Phase Interferometry I: Catalogue of Brown Dwarfs Observed in F110W and F170M"
<p>Images for Figure Sets 4, 5, 6, 7, and 9 and data behind the figure for Figure 15 from the AJ publication "NICMOS Kernel-Phase Interferometry I: Catalogue of Brown Dwarfs Observed in F110W and F170M" (Currently accepted and in press.). Figure sets and file names are described in the fsREADME file. Data behind the figure is described in the dbfREADME file.</p>
Dataset of Open-Source Software Developers Labeled by their Experience Level and Associated with their Software Metrics
<p>This dataset contains 703 anonymized developers extracted from 17 open-source projects from GitHub. Projects were chosen because they use:</p> <ul> <li>the Java programming language</li> <li>the <a href="https://spring.io/projects/spring-framework">Spring framework</a></li> <li><a href="https://maven.apache.org/">Maven</a> / <a href="https://gradle.org/">Gradle</a> build tools</li> </ul> <p>For all these developers, 23 software metrics were calculated for each project to which they contribute. These metrics are either calculated by analyzing the source code or relative to project management metadata. Each of these developers then have been manually annotated. To do this, developers have been searched for in professionnal social media such as:</p> <ul> <li><a href="https://www.linkedin.com/">Linkedin</a></li> <li><a href="https://twitter.com/">Twitter</a></li> <li><a href="https://github.com/">Github</a></li> </ul> <p><strong>This dataset is published in the following journal article: </strong></p> <p><strong>Dataset of Open-Source Software Developers Labeled by their Experience Level in the Project and their Associated Software Metrics, Q. Perez, C. Urtado and </strong><strong>S. Vauttier, Data In Brief, </strong></p> <p><a href="https://www.sciencedirect.com/science/article/pii/S2352340922010459">https://www.sciencedirect.com/science/article/pii/S2352340922010459</a></p>
Elk hair trace minerals and treponeme-associated hoof disease surveillance metadata in the US Pacific Northwest
<p>This is the publicly accessible dataset reporting concentrations of thirteen analyzed minerals from hair using inductively coupled plasma mass spectrometry and relevant metadata from treponeme-associated hoof disease in Pacific Northwest elk. The data presented here were analyzed for the manuscript entitled "Associations between hair trace mineral concentrations and the occurrence of treponeme-associated hoof disease in elk (<em>Cervus canadensis</em>)."</p> <p>Please note that reported mineral concentrations are in their adjusted values and raw forms represented by the column name having ".Raw", (e.g., "Selenium" versus "Selenium.Raw"). Elk ecotype is represented by a four letter abbreviation for either Roosevelt (ROOS) or Rocky Mountain (ROMO). Unknown values for some variables (e.g., age class, county) are denoted with a "U."</p>
Simulator dataset and associated matlab routine
<p>This archive integrates 4 data files in csv format generated in ONERA's simulator.</p> <p>These files have been used for an ERF paper, also available on zenodo (10.5281/zenodo.6673941) :</p> <p>VERSATILE OFFLINE SIMULATION TOOL FOR SYSTEMS DESIGN</p>
Longitudinal characterization of circulating neutrophils uncovers distinct phenotypes associated with severity in hospitalized COVID-19 patients
<p>Code and data for the manuscript "Longitudinal characterization of circulating neutrophils uncovers distinct phenotypes associated with severity in hospitalized COVID-19 patients".</p> <p>Contains all code located at <a href="https://github.com/lasalletj/COVID_Neutrophils">https://github.com/lasalletj/COVID_Neutrophils</a> as well as additional data files needed to run the code.</p> <p>Three additional publicly available data objects are required to run the code from start to finish. The first, covid.combined_final.Robj, from the Sinha et al. Nature Medicine 2022 paper (<a href="https://doi.org/10.1038/s41591-021-01576-3">https://doi.org/10.1038/s41591-021-01576-3</a>), is downloadable from the following link: <a href="https://figshare.com/ndownloader/files/31562957">https://figshare.com/ndownloader/files/31562957</a>. The other two required objects, seurat_COVID19_Neutrophils_cohort2_rhapsody_jonas_FG_2020-08-18.rds and seurat_COVID19_freshWB-PBMC_cohort2_rhapsody_jonas_FG_2020-08-18.rds, are from the Schulte-Schrepping et al. Cell 2020 paper (<a href="https://doi.org/10.1016/j.cell.2020.08.001">https://doi.org/10.1016/j.cell.2020.08.001</a>), and can be downloaded from <a href="https://beta.fastgenomics.org/datasets/detail-dataset-ee4b1a0f339140ad82f861aea35076f1#Files">https://beta.fastgenomics.org/datasets/detail-dataset-ee4b1a0f339140ad82f861aea35076f1#Files</a> and <a href="https://beta.fastgenomics.org/datasets/detail-dataset-1ad2967be372494a9fdba621610ad3f3#Files">https://beta.fastgenomics.org/datasets/detail-dataset-1ad2967be372494a9fdba621610ad3f3#Files</a>, respectively.</p> <p>Any additional information required to reanalyze the data reported in this work paper is available from the Lead Contact, Moshe Sade-Feldman (msade-feldman@mgh.harvard.edu) upon request.</p>
The dataset for publication "Characterization of scintillating materials in use for brachytherapy fiber based dosimeters" by S. Commeti, et al., Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 2022.
<p>This dataset is related to paper journal paper with DOI: <a href="http://dx.doi.org/10.1016/j.nima.2022.167083">10.1016/j.nima.2022.167083</a>.</p> <p>The dataset contains raw txt file and matlab files on the transmittance and the attenuation of Gadox and YVO specimens. </p> <p>Data files were prepared by agnieszka.gierej@vub.be</p>
Data associated to: Analytical Physical Model for Organic Metal-Electrolyte-Semiconductor Capacitors
<p>Data associated to the manuscript entitled: Analytical Physical Model for Organic Metal-Electrolyte-Semiconductor Capacitors by Larissa Huetter, Adrica Kyndiah and Gabriel Gomila</p>
Data to support the publication "Impact of agricultural management on soil aggregates and associated organic carbon fractions: Analysis of long-term experiments in Europe"
<p><strong>Raw data:</strong> Experimental plot ids and information, mass distribution of all aggregate fractions after wet sieving, Sand content of each fraction to conduct the sand correction, mass distribution of all fractions after isolating the micro-aggregates held within the macroaggregates, yields per treatment, carbon content per fraction (raw data)</p> <p><strong>All data per plot: </strong>SOC content, MAOM and POM content of each fraction presented in the fractionation scheme included in the manuscript, together with the mass of the relative fractions. </p> <p> </p>
Chios_Mastic_Growers_Association_09/29/22
Documentation material from the Mastic pilot of the Mingei project
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.