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3,363 results for “Replication”
Summary statistics - Imputed gene associations identify replicable trans-acting genes enriched in transcription pathways and complex traits
<p>Summary statistics for all trans-acting/target gene pairs tested in our manuscript.</p> <p>Preprint available: <a href="https://doi.org/10.1101/471748">https://doi.org/10.1101/471748</a></p>
[Replication package] INFSOF-D-18-00533
<p>Data and scripts associated with the following publications:</p> <p>Kelly Blincoe, Francis Harrison and Daniela Damian. "Ecosystems in GitHub and a Method for Ecosystem Identification using Reference Coupling." In Proceedings of the 12th Working Conference on Mining Software Repositories (MSR '15), pp. 202-211. IEEE, 2015.</p> <p>Kelly Blincoe, Francis Harrison, Navpreet Kaur, and Daniela Damian. "Reference Coupling: An Exploration of Inter-project Technical Dependencies and their Characteristics within Large Software Ecosystems." <em>Information and Software Technology</em>. In Press, 2019. </p>
Dataset and replication information for Temporal Discounting in Technical Debt: How do Software Practitioners Discount the Future?
<p>Dataset and replication information for the paper Temporal Discounting in Technical Debt: How do Software Practitioners Discount the Future? (Becker, C., Fagerholm, F., Mohanani, R., Chatzigeorgiou, A., 2009). The dataset consists of answers to a questionnaire on temporal discounting in a technical debt context. The respondents are from two companies. The raw data from the two companies is given separately. Information showing how to replicate the calculations required for analysis is given for each company. The dataset and replication information are given in both Excel (xlsx) and Open Document (ods) formats.</p>
Replication Package for Article "CoVeriTest: Cooperative Verifier-Based Testing" in Proc. FASE '19
<p>Replication package for the article<br> "Dirk Beyer and Marie-Christine Jakobs. CoVeriTest: Cooperative Verifier-Based Testing. In Proc. FASE, 2019. Springer."</p> <p>It contains all tools and data that are necessary to reproduce the results in our article.<br> The included README contains detailed instructions.</p> <p>Abstract:<br> Testing is a widely used method to assess software quality. Coverage criteria and coverage measurements are used to ensure that the constructed test suites adequately test the given software. Since manually developing such test suites is too expensive in practice, various automatic test-generation approaches were proposed. Since all approaches come with different strengths, combinations are necessary in order to achieve stronger tools. We study cooperative combinations of verification approaches for test generation, with high-level information exchange.<br> We present CoVeriTest, a hybrid approach for test-case generation, which iteratively applies different conditional model checkers. Thereby, it allows to adjust the level of cooperation and to assign individual time budgets per verifier. In our experiments, we combine explicit-state model checking and predicate abstraction (from CPAchecker) to systematically study different CoVeriTest configurations. Moreover, CoVeriTest achieves higher coverage than state-of-the-art test-generation tools for some programs.</p> <p> </p>
Replication package: assessing the sustainability of software products - a method comparison
<p><strong>Assessing the Sustainability of Software Products - A Method Comparison - Replication Package</strong></p> <p>This is a replication package for the paper entitled "Assessing the Sustainability of Software Products - A Method Comparison". The paper was submitted to the 33. EnviroInfo conference "Environmental Informatics – Computational sustainability: ICT methods to achieve the UN Sustainable Development Goals", 23th – 26th September 2019 at the University of Kassel, Germany.</p> <p>For further information, please refer to the <a href="https://zenodo.org/record/3257517/files/README.md?download=1">README.md</a></p> <p>This replication package is licensed under <a href="https://creativecommons.org/licenses/by-nc/4.0/">Creative Commons CC BY-NC 4.0</a>.</p>
Replication package for "Evolution of statistical analysis in empirical software engineering research: Current state and steps forward"
<p>This is the replication package for the analysis done in the paper "Evolution of statistical analysis in empirical software engineering research: Current state and steps forward" (DOI: <a href="https://doi.org/10.1016/j.jss.2019.07.002">https://doi.org/10.1016/j.jss.2019.07.002</a>, preprint: <a href="https://arxiv.org/abs/1706.00933">https://arxiv.org/abs/1706.00933</a>).</p> <p>The package includes CSV files with data on statistical usage extracted from 5 journals in SE (EMSE, IST, JSS, TOSEM, TSE). The data was extracted from papers between 2001 - 2015. The package also contains forms, scripts and figures (generated using the scripts) used in the paper.</p> <p>The extraction tool mentioned in the paper is available in dockerhub via: <a href="https://hub.docker.com/r/robertfeldt/sept">https://hub.docker.com/r/robertfeldt/sept</a></p>
Replication package for "Evolution of statistical analysis in ESE research"
<p>This is the replication package for the analysis done in the paper "Evolution of statistical analysis in empirical software engineering research: Current state and steps forward" (DOI: <a href="https://doi.org/10.1016/j.jss.2019.07.002">https://doi.org/10.1016/j.jss.2019.07.002</a>, preprint: <a href="https://arxiv.org/abs/1706.00933">https://arxiv.org/abs/1706.00933</a>).</p> <p>The package includes CSV files with data on statistical usage extracted from 5 journals in SE (EMSE, IST, JSS, TOSEM, TSE). The data was extracted from papers between 2001 - 2015. The package also contains forms, scripts and figures (generated using the scripts) used in the paper.</p> <p>The extraction tool mentioned in the paper is available in dockerhub via: <a href="https://hub.docker.com/r/robertfeldt/sept">https://hub.docker.com/r/robertfeldt/sept</a></p>
Processed Hi-C contact matrices for "Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization"
<p>Processed Hi-C interaction matrices (iterative correction) saved in .hic format (40kb bins).</p> <p>.hic files were generated by juicer pipeline using processed Hi-C interaction matrices.</p> <p>Only <em>cis </em>interactions were available.</p> <p>To extract the data, please see </p> <p>https://github.com/aidenlab/juicer/wiki/Data-Extraction</p>
Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels.
<p>This folder contains the data and scripts used for the paper:</p> <p>Simon, A. et al. Replicated anthropogenic hybridisations reveal parallel patterns of admixture in marine mussels. Evolutionary Applications (2019).</p> <p>See the README inside the zip archive for more details.</p>
Replication package for the paper: "Technical Debt's State of Practice on Stack Overflow: a Preliminary Study"
<p>This is the replication package for the paper "Technical Debt’s State of Practice on Stack Overflow: a Preliminary Study", published (in Portuguese) in the preliminary results track of SBQS, the Brazilian Symposium on Software Quality.</p> <p> </p> <p>We provide the data for all steps of our methodology and final analysis. Each file is numbered, indicating the order in which they were produced in our study. </p>
Metagenomic analysis suggests low in situ replication rates for dust-associated bacteria over the Red Sea
<p>Gff and fasta files of dust-associated MAGs that were analyzed on GRiD for estimation of in situ replication rates</p>
Fig. 8 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 8. Ilsanella? rozanovi Wang,1994. Specimen NIGP Mo 131358 from sample yd96924−8,upper phosphatic bed of the Zhongyicun Member,Baizai of Xundian in the eastern Yunnan,Meishucunian. A. Lateral view. B. Apical view. C. Enlargement of place shown by arrow in B,note cross section of prism replicated by internal mould. D. Enlargement of place shown by arrow in C.
Fig. 6 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 6. Archaeospira ornata Yu,1979. A. Specimen NIGP Mo 131370 from sample yd96923−10,upper part of the Dahai Member,Dahai of Huize in the eastern Yunnan,Meishucunian. Apical view (A 1); lamello−fibrillae at the apex (A2). B. Specimen NIGP Mo131370A from sample yd9649−2,upper phosphatic bed of the Zhongyicun Member,Yulu of Huize in the eastern Yunnan,Meishucunian. Lamello−fibrillae of the shell wall. C. Specimen NIGP Mo 131365 from yd96923−10, upper part of the Dahai Member, Dahai of Huize in the eastern Yunnan, Meishucunian (note fibrous structure).
Fig. 5 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 5. Latouchella cf. korobkovi Vostokova,1962. Specimen NIGP Mo 131371 from yd96924−8A upper part of the Dahai Member,Dahai of Huize in the eastern Yunnan, Meishucunian. A. Lateral view. B, C. Enlargement of place shown by arrow in B, note lamello−fibrillar structure.
Fig. 3 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 3. Watsonella yunnanensis (He and Yang,1982). Specimen NIGP Mo 131363 from sample yy9649−1,upper phosphatic bed of the Zhongyicun Member, Yulu of Huize in the eastern Yunnan, Meishucunian. A. Lateral view. B, C. Lamello−fibrillar structure. D. Enlargement of C.
Fig. 4. Ramenta cambrina Jiang,1982 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 4. Ramenta cambrina Jiang,1982. Specimen NIGP Mo 131200 from sample yy9649−1,upper phosphatic bed of the Zhongyicun Member,Beideng of Anning in the eastern Yunnan,Meishucunian. A. Lateral view. B. Apical view. C. Enlargement of place shown by arrow a in B,note irregular polygonal convexity. D. Enlargement of C, note lamello−fibrillar structure.
Fig. 2 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 2. Ilsanella cf. orectes (Jiang,1982). Specimen NIGP Mo 131353 from sample yb96929−1,upper phosphatic bed of the Zhongyicun Member,Baizai Xundian in the eastern Yunnan,Meishucunian. A. Lateral view. B. Lamello−fibrillae (arrow a) approximately perpendicular to growth lines (arrow b). C. Microstructure of inner surface of external coating. D. Enlargement of place shown by arrow in C, note lamello−fibrillae.
Fig. 7 in Phosphate replicated and replaced microstructure of molluscan shells from the earliest Cambrian of China
Fig. 7. Papilloconus explanatus Feng et al.,2000. Specimen NIGP Mo 131364 from sample yd96924,upper phosphatic bed of the Zhongyicun Member, Baizai of Xundian in the eastern Yunnan,Meishucunian. A. Lateral view. B. Apical view. C. Enlargement of place shown by arrow in B,note regular ar − rangement of nodules, corresponding to the end of prisms.
On the Role of Font Formats in Building Efficient Web Applications - Replication Package
<p>Replication Package for the paper - On the Role of Font Formats in Building Efficient Web Applications. It is the final version of the replication package for the PROFES 2023 conference (<a href="https://conf.researchr.org/details/profes-2023/profes-2023-papers/18/On-the-Role-of-Font-Formats-in-Building-Efficient-Web-Applications">https://conf.researchr.org/details/profes-2023/profes-2023-papers/18/On-the-Role-of-Font-Formats-in-Building-Efficient-Web-Applications</a>). </p>
Replication Package for "Type Inference in Kotlin: An Exploratory Study of Developer Usage Patterns"
<p>This dataset includes scripts and data files used to generate all analysis and results from the paper. A <strong>README.md</strong> file is included for details on using the scripts.</p> <p>The dataset is quite large. It is broken down into three archives. All scripts are in <strong>replication-pkg.zip</strong> and the other 2 files only contain data. So if you want to just inspect the analysis, you only need that single zip.</p> <p>If you grab the <strong>data-cache.zip</strong> file and extract it, it will need around 1GB of space. This is the processed dataset stored in Parquet files. Use this if you want to just recreate the tables/figures from the paper.</p> <p>If you want to make changes to the analyses, you will need the raw data in <strong>data.zip</strong>. This will need around 13GB of space once extracted. If you then generate the CSV files from those TXT files (which you will need to do for any custom analysis), you will need an additional 12GB of space.</p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.