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391
datasets available to search
ShareScore release 0.9.0
Dataset results
391 results for “Spatial analysis”
Single cell spatial analysis and biomarker discovery in Hodgkin lymphoma
<p>Imaging Mass Cytometry Data of Hodgkin Lymphoma. Details in associated manuscript</p>
Fig. 5 in Ground beetles (Coleoptera: Carabidae) from the region of Cape Emine (central Bulgarian Black sea coast). Part III. Spatial distribution and gradient analysis
Fig. 5. Distribution of the chorotypes: OLA – Holarctic; PAL – Palearctic; W-PAL – Western Palearctic; E-SI – Eurosiberian; E-WSI – European-Westsiberian; EUR – European; E-PAS – European-Neareastern; CE-PAS – Central European and Neareastern; C-EE – Central and Eastern European; BAL-K – Balkan-Carpathian; E-AS – Euroasiatic steppe complex; E-CAS – European and Central Asian; B-CAS – Balkan and Central Asian; B-PAS – Balkan-Neareastern (+ Balkan-Anatolian); E-CA-M – European- Centralasian-Mediterranean; E-PA-M – European-Neareastern-Mediterranean; CA- MED – Mediterranean-Centralasian; MED-PAS – Mediterranean-Neareastern; MED – Mediterranean; E-MED – Eastmediterranean; P-SMED – Pontic-Submediterranean; SE – South European; NMED – Northmediterranean; NM-CAS – Northmediterranean- Centralasian; BGE – Bulgarian endemic.
Single-Cell and Spatial Transcriptomics Analysis of Steatotic Donor Liver Susceptibility to Post-Transplant Injury
ClinicalTrials.gov study NCT07362745. IPD Sharing: NO. Countries: 1. Publications: 0.
Data from: Comparative analysis of 2D and 3D distance measurements to study spatial genome organization
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Data from: Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern US
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Land use changes threaten bird taxonomic and functional diversity across the Mediterranean basin: a spatial analysis to prioritize monitoring for conservation
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Data from: Analysing small insect glands with UV-LDI MS: high-resolution spatial analysis reveals the chemical composition and use of the osmeterium secretion in Themira superba (Sepsidae: Diptera)
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Spatially resolved transcriptional analysis of hearts from mice flown on the RR-3 mission
The Rodent Research-3 (RR-3) mission was sponsored by the pharmaceutical company Eli Lilly and Co. and the Center for the Advancement of Science in Space to study the effectiveness of a potential countermeasure for the loss of muscle and bone mass that occurs during spaceflight. Twenty BALB/c 18-weeks old female mice (ten controls and ten treated) were flown to the ISS and housed in the Rodent Habitat for 39-42 days. Twenty mice of similar age sex and strain were used for ground controls housed in identical hardware and matching ISS environmental conditions. Basal controls were housed in standard vivarium cages. Spaceflight ground controls and basal groups had blood collected then were euthanized had one hind limb removed and finally whole carcasses were stored at -80 C until dissection. All mice in this data set received only the control/sham injection. Spatially resolved transcriptional profiles were generated from hearts from three flight and three ground control animals as follows. Hearts were cryosectioned longitudinally onto an array of capture probes that bind RNA fixed stained and visualized. Heart sections were then permeabilized to release RNA onto the capture probes and cDNA synthesized on the chip so that its spatial arrangement is encoded within a set of molecular barcodes. cDNA was then released and sequenced. Four to five levels of each heart was analyzed in this manner to allow a 3D reconstruction of the transcriptome.
Spatially resolved transcriptional analysis of brains from mice flown on the RR-3 mission
The Rodent Research-3 (RR-3) mission was sponsored by the pharmaceutical company Eli Lilly and Co. and the Center for the Advancement of Science in Space to study the effectiveness of a potential countermeasure for the loss of muscle and bone mass that occurs during spaceflight. Twenty BALB/c 18-weeks old female mice (ten controls and ten treated) were flown to the ISS and housed in the Rodent Habitat for 39-42 days. Twenty mice of similar age and matching sex and strain were used for ground controls housed in identical hardware and matching ISS environmental conditions. Basal controls were housed in standard vivarium cages. Spaceflight ground controls and basal groups had blood collected then were euthanized had one hind limb removed and finally whole carcasses were stored at -80 C until dissection. All mice in this data set received only the control/sham injection. Brain samples from three flight and three ground control animal groups were cut in half between hemispheres. One hemisphere of each brain was used for generating spatially resolved transcriptional profiling data. Hemispheres were cryosectioned so that 2 consecutive sections from the hippocampus of each brain was placed on Visium Gene Expression arrays. Samples were fixed stained with Hematoxylin and Eosin and imaged. Imaging was followed by tissue permeabilization to release mRNA molecules from cells for capture onto the array surface. Subsequently following the 10XGenomics Visium Gene Expression protocol Spatial Transcriptomics RNA-seq libraries were prepared and sequenced.
scRNA-seq, snATAC-seq, and spatial transcriptomics analysis of mammary glands of aged female mice
GEO Series GSE216542. Mus musculus. 22 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
Molecular and spatial analysis unveils the functional basis of tertiary lymphoid structures in Sjogren’s syndrome[bulk RNA-seq]
GEO Series GSE272410. Homo sapiens. 73 samples. Type: Expression profiling by high throughput sequencing.
High resolution mapping of the tumor microenvironment using integrated single-cell, spatial and in situ analysis
GEO Series GSE243280. Homo sapiens. 7 samples. Type: Other; Expression profiling by high throughput sequencing.
High-resolution spatial transcriptomics and cell lineage analysis reveal spatiotemporal cell fate determination during craniofacial development
GEO Series GSE293181. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Sandwich cortical lamination and single-cell analysis decodes the developing spatial processing system
GEO Series GSE134482. Sus scrofa. 10 samples. Type: Expression profiling by high throughput sequencing.
A microfluidics workflow for spatial analysis of microenvironmental gradient impact on cancer cell phenotypes
GEO Series GSE242233. Homo sapiens. 3 samples. Type: Expression profiling by high throughput sequencing.
Visium Analysis of head and neck squamous carcinoma (HNSCC) spatial transcriptome evolution
GEO Series GSE181300. Homo sapiens. 8 samples. Type: Expression profiling by high throughput sequencing.
Spatially resolved single-cell analysis uncovers protein kinase Cδ-expressing microglia with anti-tumor activity in glioblastoma [scRNA-seq]
GEO Series GSE298688. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Tongue immune compartment analysis reveals spatial macrophage heterogeneity [bulk RNA-Seq]
GEO Series GSE205158. Mus musculus. 38 samples. Type: Expression profiling by high throughput sequencing.
Spatial Transcriptomic Analysis of Surgical Resection Specimens of Primary Head and Neck Squamous Cell Carcinoma Treated with Afatinib in a Window-of-Opportunity Study (EORTC90111-24111)
GEO Series GSE289908. Homo sapiens. 3 samples. Type: Other.
Integrative single cell and spatial transcriptomic analysis reveal reciprocal microglia-plasma cell crosstalk in the mouse brain during chronic Trypanosoma brucei infection
GEO Series GSE200642. Mus musculus. 9 samples. Type: Expression profiling by high throughput sequencing.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.