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445 results for “abiotic”
Data from: Abiotic constraints on the activity of tropical lizards
Many tropical ectotherms are considered vulnerable to anthropogenic climate change because they have evolved to become thermal specialists. Indeed, several recent studies have suggested that even small increases in mean operative temperature may lead to a reduction in activity and the subsequent extinction of populations. Within the tropics, lizards are considered particularly vulnerable due to the potential for climate change to directly impact physiology and alter community interactions. However, models usually focus on the effects of mean operative temperature at the expense of other climate variables that may also affect lizard physiology. We used daily variation in operative temperature, humidity, and wind speed to examine how changes in climate influence activity in two species of lizards from the island of Cayo Menor, Honduras. Anolis lemurinus is a forest species, whereas A. allisoni is an open-habitat species. We conducted daily surveys for active lizards in habitat typical to each species, while simultaneously measuring operative thermal environments with physical models. The effects of the thermal environment were considered in the context of the thermal sensitivity of sprint speed for each species, and compared with the effects of the hydric (humidity) and convective (wind) environments. When all surveys were combined into a single analysis, the activity of the forest species Anolis lemurinus was positively correlated with wind speed, the spatial heterogeneity of operative temperature, and the mismatch between mean operative temperature and the optimal temperature for sprint performance. Mean operative temperature did significantly effect Anolis lemurinus activity, but only when it was above their thermal optimum. Activity of the open-habitat species A. allisoni was negatively correlated with wind speed, but was not related to any other climate variable. Whereas the mismatch between mean operative temperature and the thermal optimum for performance predicted the activity level of the forest species in ways partially consistent with its use in models for the response of lizards to climate change, the effects of the abiotic environment were habitat-dependent. Our results suggest that successfully predicting the biological impacts of climate change will require holistic models that account for more than changes in mean temperature alone.
Data from: Assembly of root-associated bacteria communities: interactions between abiotic and biotic factors
Nitrogen (N) deposition in many areas of the world is over an order of magnitude greater than it would be in absence of human activity. We ask how abiotic (N) and biotic (plant host and neighborhood) effects interact to influence root-associated bacterial (RAB) community assembly. Using 454 pyrosequencing, we examined RAB communities from two dominant alpine tundra plants, Geum rossii and Deschampsia cespitosa, under control, N addition and D. cespitosa removal treatments, implemented in a factorial design. We hypothesized that host would have the strongest effect on RAB assembly, followed by N, then neighbor effects. The most dominant phyla were Proteobacteria (mostly Gammaproteobacteria), Actinobacteria, Bacteroidetes and Acidobacteria. We found RAB communities were host specific, with only 17% overlap in operational taxonomic units. Host effects on composition were over twice as strong as N effects. D. cespitosa RAB diversity declined with N, while G. rossii RAB did not. D. cespitosa removal did not influence G. rossii RAB community composition, but G. rossii RAB diversity declined with N only when D. cespitosa was absent. We conclude that RAB of both hosts are sensitive to N enrichment, and RAB response to N is influenced by host identity and plant neighborhood.
Data from: Controls on niche stability in geologic time Congruent responses to biotic and abiotic environmental changes among Cincinnatian (Late Ordovician) marine invertebrates
The set of environmental conditions under which a taxon can survive and maintain viable populations, known as the ecological niche, is a fundamental determinant of a taxon's distribution. Because of the central importance of ecological niches, they have been assumed to remain relatively stable during intervals of morphological stasis. However, the assumption of niche stability has rarely been tested directly with fossil data spanning multiple temporal intervals. Thus, the conditions under which this assumption is likely to be accurate are not well understood. In this study, we use ecological niche modeling (ENM) to reconstruct the ecological niche for 11 genera of marine benthos (crinoids, trilobites, molluscs, bryozoans, and corals) from the Type Cincinnatian Series (Late Ordovician, Katian Stage) across nine temporal intervals spanning approximately three million years. This interval includes both abiotic environmental change (gradual sea-level fall) and biotic change (rapid pulses of the Richmondian Invasion), thus allowing the relative effect of different environmental perturbations to be constrained. A previous symmetrical analysis of niche stability of brachiopod species recovered an increase in niche evolution following the Richmondian Invasion. Herein we test the generality of the brachiopod pattern within the community. Niche stability was evaluated in geographic space, ecological space, and niche parameter space. Niche stability varied through time; during the Pre-Invasion interval, taxa exhibited niche stability during gradual shallowing of sea level in the basin, whereas niche evolution became more common during the Richmondian Invasion. Taxa adjusted to the increased competition by altering aspects of their niche. Notably, surviving taxa contracted their niche into a subset of their previous niche parameters. This represents an adaptive response to increased competition for resources with the newly established invader taxa, and it was employed most successfully by generalist taxa. Patterns of niche evolution were congruent between clades, among feeding styles, and across taxonomic levels.
Beneficial microbes ameliorate abiotic and biotic sources of stress on plants
1. Global climate change and shifting land-use are increasing plant stress due to abiotic factors such as drought, heat, salinity and cold, as well as via the intensification of biotic stressors such as herbivores and pathogens. The ability of plants to tolerate such stresses is modulated by the bacteria and fungi that live on or inside of plant tissues and comprise the plant microbiome. However, the impacts of diverse classes of beneficial microbes and the contrasting stresses that impact plant performance are most commonly studied independently of each other. 2. Our meta-analysis of 288 experiments across 89 studies moves beyond previous studies in that we simultaneously compare the roles of bacterial versus fungal microbiome members that live within plant tissues and colonize plant surfaces in ameliorating biotic versus abiotic sources of plant stress. 3. The magnitude of microbial stress amelioration can be measured as the greater proportional impact of beneficial microbes on plant performance in more stressful environments. In the plant experiments we examine, the magnitude of microbial stress amelioration is substantial: it is 23% of the effect size of the typical impact of stress and 56% of the effect size of beneficial microbes in the absence of stress. 4. The amount of benefit microbes confer to plants differs among classes of microbes, depending on whether plants are grown in stressful or non-stressful environments. In the absence of stress, beneficial bacteria tend to confer greater plant benefits than do fungi. However, symbiotic fungi, especially arbuscular mycorrhizal fungi, more strongly ameliorate plant stress than do bacteria. In particular, beneficial microbes ameliorate salinity, foliar herbivory, and fungal pathogen stress. 5. These results highlight the fact that the impacts of beneficial and antagonistic components of the microbiome on plant performance depend on biotic and abiotic environmental contexts. Furthermore, beneficial microbiota are especially critical for plant health in stressful environments and thus present opportunities to mitigate negative consequences of global change.
Data from: Mechanisms of plant–plant interactions: concealment from herbivores is more important than abiotic-stress mediation in an African savannah
Recent work on facilitative plant–plant interactions has emphasized the importance of neighbours' amelioration of abiotic stress, but the facilitative effects of neighbours in reducing plant apparency to herbivores have received less attention. Whereas theory on stress reduction predicts that competition should be more important in less stressful conditions, with facilitation becoming more important in harsh environments, apparency theory suggests that facilitation should be greater in the presence of herbivores, where it is disadvantageous to be conspicuous regardless of abiotic stress level. We tested the relative strength of neighbours' stress reduction versus apparency reduction on survival, growth, reproduction and lifetime fitness of Hibiscus meyeri, a common forb in central Kenya, using neighbour removals conducted inside and outside large-herbivore exclosures replicated in arid and mesic sites. In the absence of herbivores, neighbours competed with H. meyeri in mesic areas and facilitated H. meyeri in arid areas, as predicted by stress-reduction mechanisms. By contrast, neighbours facilitated H. meyeri in the presence of herbivory, regardless of aridity level, consistent with plant apparency. Our results show that the facilitative effects arising from plant apparency are stronger than the effects arising from abiotic stress reduction in this system, suggesting that plant-apparency effects may be particularly important in systems with extant large-herbivore communities.
Data from: Abiotic conditions mediate intraguild interactions between mammalian carnivores
1. Intraguild (IG) interactions are common among mammalian carnivores, can include intraguild predation (IGP) and interspecific killing (IK), and are often asymmetrical, where a larger more dominant species (IGpredator) kills a smaller one (IGprey). According to ecological theory, the potential for a IGpredator and IGprey to coexist depends on whether the direct consumptive benefits for the IGpredator are substantial (IGP) or insignificant (IK), the extent to which the IGprey is the superior exploitative competitor on shared prey resources, and overall ecosystem productivity. 2. We used resource selection models and spatially-explicit age and harvest data for two closely related mesopredators that engage in IG interactions, American martens (Martes americana; IGprey) and fishers (Pekania pennanti; IGpredator), to identify drivers of distributions, delineate areas of sympatry and allopatry, and explore the role of an apex predator (coyote; Canis latrans) on these interactions. 3. Model selection revealed that fisher use of this landscape was strongly influenced by late winter abiotic conditions, but other bottom-up (forest composition) and top-down (coyote abundance) factors also influenced their distribution. Overall, fisher probability of use was higher where late winter temperatures were warmer, snowpack was deeper, and measures of productivity were greater. Martens were constrained to areas of the landscape where the probability of fisher use, coyote abundance, and productivity were low and selected for forest conditions that presumably maximized prey availability. Marten age data indicated an increased proportion of juveniles outside of the predicted area of sympatry, suggesting that few animals survived >1.5 years in this area that supported higher densities of fishers. 4. Consistent with asymmetrical IG interaction theory, the IGpredator (fishers and, to a lesser degree, coyotes) competitively excluded the IGprey (martens) from highly productive, milder temperature habitats, whereas IGpredators and IGprey coexisted in low productivity environments, where a combination of abiotic and biotic conditions enabled the IGprey to be the superior exploitative competitor.
Data from: Persistence at the final stage of volcanic island ontogeny: abiotic predictors explain native plant species richness on 111 remote Pacific atolls
Aim: The final island ontogeny of the General Dynamic Model (GDM) (i.e. before island submergence) in tropical oceans corresponds to the coral atoll stage. Here, we examined whether the species richness of native vascular plants (indigenous and endemic species) on atolls is controlled by spatial and/or physical processes. We also predicted that atolls strongly affected by anthropogenic disturbance would have lower native species richness than predicted by spatial and physical processes. Location: Marshall Islands, Kiribati Islands, Nauru, Niue, Johnston, Cook Islands, French Polynesia and Pitcairn Islands (Pacific Ocean). Taxon: Native vascular plants Methods: We used stepwise regression to test the relative influence of five biogeographic variables on native species richness. Relationships were assessed for the full set of 111 Pacific coral atolls, as well as for atoll subsets ranging from 9 to 45 atolls. An index of human impact was then estimated, and residuals in the regression model predicting species richness from biogeographic variables were compared with the level of human impact. Results: A regression model including atoll area, highest atoll elevation, the stepping stone distances from the nearest raised atoll and volcanic island explained native species richness on the 111 Pacific coral atolls. Regression models for different archipelagos and atoll subsets were also significant. Endemic species richness was significantly linked with highest atoll elevation and the stepping stone distances from the nearest raised atoll. Residuals in the biogeographic regression model were barely related to human impact across the 111 atolls but were significantly related to human impact in the Kiribati atolls. Main conclusions: Native species richness on atolls is mainly controlled by physical and spatial characteristics. However, anthropogenic disturbances have altered the predicted pattern of native species richness leading to a lower model fit in some atoll subsets.
Data from: Abiotic environmental variation drives virulence evolution in a fish host-parasite geographic mosaic
1.Parasite virulence varies greatly. Theory predicts that this arises from parasites optimising a trade-off between the mortality they inflict on current hosts, and their transmission to future hosts. The effect of the environment on this coevolution is rarely considered. 2.Geographic mosaics are fertile systems for studying coevolution, but again, the diversity of outcomes is often assumed to result from co-evolutionary dynamism, rather than being moulded by the environment. 3.Here we quantify variation in virulence among lakes in a geographic mosaic of coevolution between a trematode ectoparasite (Gyrodactylus arcuatus) and its three-spined stickleback (Gasterosteus aculeatus) host. 4.Virulence varies greatly in this system, and parasites are generally locally adapted to their hosts. 5.Parasites are also locally adapted to the water in their own lake, and virulence is strongly related to lake pH, the dominant axis of abiotic environmental variation in this system. 6.These results suggest that the evolution of virulence can be substantially affected by the abiotic environment, which has important implications for understanding coevolution. There are also implications for the evolutionary management of disease e.g. ectoparasites in aquaculture, the impacts of which might be expected to reduce given ongoing acidification of aquatic ecosystems.
Data from: Biotic and abiotic factors shape the microbiota of wild-caught populations of the arbovirus vector Culicoides imicola
Biting midges of the genus Culicoides are known vectors of arboviruses affecting human and animal health. However, little is known about Culicoides imicola microbiota and its influence on this insect's biology. In this study, the impact of biotic and abiotic factors on C. imicola microbiota was characterized using shotgun-metagenomic sequencing of whole body DNA samples. Wild-caught C. imicola adult nulliparous females were sampled in two locations from Sicily, Italy. The climatic variables of temperature and soil moisture from both localities were recorded together with potential host blood meal sources. Shared core microbiome among C. imicola populations included Pseudomonas, Escherichia, Halomonas, Candidatus Zinderia, Propionibacterium, and Schizosaccharomyces. Specific and unique taxa were also found in C. imicola from each location, highlighting similarities and differences in microbiome composition between both populations. DNA and protein identification showed differences in host preferences between both populations with Homo sapiens and Canis lupus familiaris L. being the preferred blood meal source in both locations. A principal component analysis showed that the combined effect of host preferences (H. sapiens) and local soil moisture factors shape the microbiome composition of wild-caught populations of C. imicola. These results contribute to characterizing the role of the microbiome in insect adaptation and its utility in predicting geographic expansion of Culicoides species with potential implications for the control of vector-borne diseases.
Data from: The role of abiotic and biotic factors in determining coexistence of multiple pollinators in the yucca-yucca moth mutualism
The determinants of a species' geographic distribution are a combination of both abiotic and biotic factors. Environmental niche modeling of climatic factors has been instrumental in documenting the role of abiotic factors in a species' niche. Integrating this approach with data from species interactions provides a means to assess the relative roles of abiotic and biotic components. Here, we examine whether the high host specificity typically exhibited in the active pollination mutualism between yuccas and yucca moths is the result of differences in climatic niche requirements that limit yucca moth distributions or the result of competition among mutualistic moths that would co-occur on the same yucca species. We compared the species distribution models of two Tegeticula pollinator moths that use the geographically widespread plant Yucca filamentosa. Tegeticula yuccasella occurs throughout eastern North America whereas T. cassandra is restricted to the southeastern portion of the range, primarily occurring in Florida. Species distribution models demonstrate that T. cassandra is restricted climatically to the southeastern United States and T. yuccasella is predicted to be able to live across all of eastern North America. Data on moth abundances in Florida demonstrate that both moth species are present on Y. filamentosa; however, T. cassandra is numerically dominant. Taken together, the results suggest that moth geographic distributions are heavily influenced by climate, but competition among pollinating congeners will act to restrict populations of moth species that co-occur.
Data from: Soil abiotic variables are more important than Salicaceae phylogeny or habitat specialization in determining soil microbial community structure
Predicting the outcome of interspecific interactions is a central goal in ecology. The diverse soil microbes that interact with plants are shaped by different aspects of plant identity, such as phylogenetic history and functional group. Species interactions may also be strongly shaped by abiotic environment, but there is mixed evidence on the relative importance of environment, plant identity, and their interactions in shaping soil microbial communities. Using a multi-factor, split-plot field experiment, we tested how hydrologic context, and three facets of Salicaceae plant identity - habitat specialization, phylogenetic distance, and species identity - influence soil microbial community structure. Analysis of microbial community sequencing data with generalized dissimilarity models showed that abiotic environment explained up to 25% of variation in community composition of soil bacteria, fungi, and archaea, while Salicaceae identity influenced less than 1% of the variation in community composition of soil microbial taxa. Multivariate linear models indicated that the influence of Salicaceae identity was small, but did contribute to differentiation of soil microbes within treatments. Moreover, results from a microbial niche breadth analysis show that soil microbes in wetlands have more specialized host associations than soil microbes in drier environments - showing that abiotic environment changed how plant identity correlated with soil microbial communities. This study demonstrates the predominance of major abiotic factors in shaping soil microbial community structure; the significance of abiotic context to biotic influence on soil microbes; and the utility of field experiments to disentangling the abiotic and biotic factors that are thought to be most essential for soil microbial communities.
Data from: Leaf litter nutrient uptake in an intermittent blackwater river: influence of tree species and associated biotic and abiotic drivers
1. Organic matter may sequester nutrients as it decomposes, increasing in total N and P mass via multiple uptake pathways. During leaf litter decomposition, microbial biomass and accumulated inorganic materials immobilize and retain nutrients, and therefore, both biotic and abiotic drivers may influence detrital nutrient content. We examined the relative importance of these types of nutrient immobilization and compared patterns of nutrient retention in recalcitrant and labile leaf litter. 2. Leaf packs of water oak (Quercus nigra), red maple (Acer rubrum) and Ogeechee tupelo (Nyssa ogeche) were incubated for 431 days in an intermittent blackwater stream and periodically analysed for mass loss, nutrient and metal content, and microbial biomass. These data informed regression models explaining temporal changes in detrital nutrient content. Informal exploratory models compared estimated biologically associated nutrient stocks (fungal, bacterial, leaf tissue) to observed total detrital nutrient stocks. We predicted that (i) labile and recalcitrant leaf litter would act as sinks at different points in the breakdown process, (ii) plant and microbial biomass would not account for the entire mass of retained nutrients, and (iii) total N content would be more closely approximated than total P content solely from nutrients stored in leaf tissue and microbial biomass, due to stronger binding of P to inorganic matter. 3. Labile litter had higher nutrient concentrations throughout the study. However, lower mass loss of recalcitrant litter facilitated greater nutrient retention over longer incubations, suggesting that it may be an important long-term sink. N and P content were significantly related to both microbial biomass and metal content, with slightly stronger correlation with metal content over longer incubations. 4. Exploratory models demonstrated that a substantial portion of detrital nutrients was not accounted for by living or dead plant and microbial biomass, especially in the case of N. This suggests increased importance of both N and P sorption to inorganic matter over time, with possible additional storage of N complexed with lignin. A better understanding of the influence of these mechanisms may improve our understanding of detrital nutrient uptake, basal resource quality and retention and transport of nutrients in aquatic ecosystems.
The role of abiotic and biotic factors in the unequal body shape diversification of a Gondwanan fish radiation (Otophysi:Characiformes)
<p>Understanding why some clades diversify greatly, while others do not, is a major goal of evolutionary biology. Both abiotic and biotic factors are important in driving unequal morphological diversity across the tree of life. However, few studies have quantified how differences in abiotic habitat and community composition influence unequal morphological diversification in spatiotemporally diffuse radiations. Here we use geometric morphometrics, abiotic habitat data generated by Geographic Information Systems (GIS) analyses, evolutionary simulations, and phylogenetic comparative methods to determine whether random evolution, habitat variation, competition for niches or a combination of factors influenced the unequal body shape diversity of a Gondwanan freshwater fish radiation. We find that neotropical characiform lineages, which exhibit substantially more body shape diversity than their African counterparts, occupy significantly more slope and elevation habitats than African lineages. Differences in habitat occupation between the continental radiations occur by a combination of competition with cypriniform fishes in Africa restricting access to higher slope and elevation habitats and significantly more low elevation and slope habitat available in the neotropics. Our findings suggest that spatiotemporally widespread radiations, like the Characiformes, do not diversify across homogenized habitats and biotic assemblages, with differences in community structure and physical habitat important in driving unequal morphological diversification. </p>
Figure 3 in Phenology and impact of abiotic factors with a temporal lag on the abundance of common crab spider, Xysticus cristatus (Clerck, 1757) (Araneae: Thomisidae) in the agroecosystems of Kashmir
Figure 3. Carapace width frequency distribution of the monthly catches of Xysticus cristatus from April to September 2019.
Figure 4 in Phenology and impact of abiotic factors with a temporal lag on the abundance of common crab spider, Xysticus cristatus (Clerck, 1757) (Araneae: Thomisidae) in the agroecosystems of Kashmir
Figure 4. Activity pattern in terms of number of females caught in pitfall traps and abdominal width from March to July 2019 during the reproductive period in females of Xysticus cristatus.
Figure 2 in Phenology and impact of abiotic factors with a temporal lag on the abundance of common crab spider, Xysticus cristatus (Clerck, 1757) (Araneae: Thomisidae) in the agroecosystems of Kashmir
Figure 2. Circular histograms illustrating the frequency of age structure established for the population of Xysticus cristatus in agroecosystems of Kashmir from March 2018 to February 2020. The angular mean or direction of the data is indicated by the grey line vector inside the circle. The 95% confidence interval is indicated by the transverse line in the sector outside the circle.
Reduced fitness under abiotic stress in F1 hybrids of Antirrhinum majus subspecies with divergent flower colors
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Data for: Interplay of abiotic conditions, density, and body size in shaping demography in a high-elevation toad population
<p>This dataset is used to estimate vital rates of a common toad (<em>Bufo bufo</em>) alpine population, and how they are associated with either abiotic (environmental conditions), biotic (in our case population size), and individual factors (body size). We have individual capture histories for the period 1993-2020 for 1615 males and 933 females, as well as body size measurements taken during capture events. For more info about the study system see: https://peercommunityjournal.org/articles/10.24072/pcjournal.240/</p> <p>We run a capture-mark-recapture model coupled with a growth model, the latter to obtain information on body size for the years when the individuals were not captured. Aside from sex-specific survival, we estimate female breeding probability, since they show intermittent breeding. We include as covariates for these vital rates the length of the active season, the temperature at emergence from hibernation, population size, and body size. </p> <p>We obtained climatic data for the period 1980–2020 from the DaymetCH dataset (data obtained from Bioclimatic maps of Switzerland © WSL, based on station data from the Federal Office of Meteorology and Climatology MeteoSwiss, and elaborated by the Land Change Science group, WSL).</p> <p>The README file further describes each uploaded file</p>
Data for Kinetic isotope effects during reduction of Fe(III) to Fe(II): Large normal and inverse isotope effects for abiotic reduction and smaller fractionations by phytoplankton in culture
<p>Supplemental data for the manuscript "Kinetic isotope effects during reduction of Fe(III) to Fe(II): Large normal and inverse isotope effects for abiotic reduction and smaller fractionations by phytoplankton in culture."</p>
Enhanced Sequestration of Organic Matter and Phosphate by Fe-oxides Generated from Abiotic Fe(II) Oxidation in the Presence of Heavy Metals
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