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195
datasets available to search
ShareScore release 0.9.0
Dataset results
195 results for “biomedical”
Establishment of the 2H-labeling Protocol at Pennington Biomedical Research Center
ClinicalTrials.gov study NCT03530111. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Data from: A cross-lingual similarity measure for detecting biomedical term translations
Open the record for dataset details and reuse information.
Data from: It’s all in the timing: calibrating temporal penalties for biomedical data sharing
Open the record for dataset details and reuse information.
Inference and validation of predictive gene networks from biomedical literature and gene expression data
GEO Series GSE53091. Homo sapiens. 125 samples. Type: Expression profiling by array.
sCLIP – An integrated platform to study RNA-protein interactome(s) in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs [RNA-Seq]
GEO Series GSE92996. Homo sapiens. 4 samples. Type: Expression profiling by high throughput sequencing.
Dataset: Relationship extraction for knowledge graph creation from biomedical literature (Gene-Disease relationships)
<p>This is the dataset used for classifying Gene-Disease relationship types from sentences. The dataset consists of 3 files:</p> <ul> <li>manually_annotated_set.xlsx - set of 2000 manualy annotated sentences with entities</li> <li>Unbalanced_dataset.xlsx - set of 12000 sentences, out of which 2000 are from the first set, manually annotated, and the rest have been added using rule based method by adding sentences where extraction had confidence 1.</li> <li>Balanced_dataset_SUB_PRED.xlsx - balanced dataset generated by taking 2000 manually annotated sentences, but then adding sentences from the rule-based method with confidence 1 in such a way that each relationship class had at least 1400 sentences (for biomarkers, we could obtain 1243 sentences with confidence 1 from a processed portion of the data we had at the time of building the dataset).</li> </ul> <p> </p>
Effectiveness of Pain Neuroscience Education vs Biomedical Education for Patients Undergoing Surgery for Shoulder Pain
ClinicalTrials.gov study NCT02960477. IPD Sharing: NO. Countries: 0. Publications: 0.
Communication Skills to Build a Diverse Biomedical Workforce
ClinicalTrials.gov study NCT05048290. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Versatile human cardiac tissues engineered with perfusable heart extracellular microenvironment for biomedical applications
GEO Series GSE231493. Homo sapiens. 12 samples. Type: Expression profiling by high throughput sequencing.
sCLIP - An integrated platform to study RNA-protein interactome(s) in biomedical research: identification of CSTF2tau in alternative processing of small nuclear RNAs
GEO Series GSE92997. Homo sapiens. 7 samples. Type: Expression profiling by high throughput sequencing; Other.
Blood transcriptome responses to PFOA and GenX treatment in the marsupial biomedical model Monodelphis domestica
GEO Series GSE208237. Monodelphis domestica. 25 samples. Type: Expression profiling by high throughput sequencing.
Crux Biomedical IVC Filter - Evaluation of the Crux Inferior Vena Cava Filter System (Retrieve)
ClinicalTrials.gov study NCT00605332. IPD Sharing: Not stated. Countries: 0. Publications: 0.
Timeline for cases associated with Letter to the Editors sent for publication in different biomedical journals
<p>These cases are concerned with the handling of the manuscript by journal editors and the experience gained by the eauthors.</p>
Introduction to Biomedical Image Analysis (for Beginners)
<p>Small dataset of the zebrafish brain vasculature acquired at 3 days post fertilization (dpf) with a Zeiss Z.2 light-sheet microscope. Transgenic reporter line used: blood vessels <em>Tg(kdrl:HRAS-mCherry)</em><sup><em>s916</em></sup> labels EC membrane (Chi et al., 2008).</p> <p>Data were acquired by Elisabeth Kugler at the University of Sheffield conforming to UK Home Office regulations and were performed under Home Office Project Licence 70/8588 held by TJAC. - Data are part of the publication: Kugler et al., 2019 as well as Dr Kugler's thesis.</p> <p>Dataset consists only of 3 samples and is used as a sample dataset to train students in biomedical image analysis.</p> <p>Image Acquisition Details:<br> Datasets in Sheffield were obtained using a Zeiss Z.1 light sheet microscope with a water-dipping detection objective (Plan-Apochromat 20×/1.0 Corr nd = 1.38) and a scientific complementary metal-oxide semiconductor (sCMOS) detection unit. Data were acquired with activated pivot scan, dual-sided illumination and online fusion; properties of acquired data are as follows: 0.7× zoom, 16bit image depth, 1,920 × 1,920px image size and minimum z-stack interval (approx. 0.33 × 0.33× 0.5 μm). Green and red fluorophores were excited using 488 nm and 561 nm laser, respectively. Used filters in sequential tracks for multi-colour images were LP560 for both and BP505-545 and LP585, respectively. Samples were embedded in 1% or 2% LMP-agarose containing 200 mg/l Tricaine (MS-222, Sigma). The image acquisition chamber was filled with E3 plus Tricaine (200 mg/ml) and maintained at 28°C.</p>
Modification of polyurethane materials with fluorine and siloxane groups for use as biomedical materials in 3D printing - experimental data
<p>Experimental data collected as part of the research project "Modification of polyurethane materials with fluorine and siloxane groups for use as biomedical materials in 3D printing" (grant no. 2022/06/X/ST4/00452) financed by the National Science Center (NCN) as part of the MINIATURA 6 program.</p>
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.