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Figure 7 from: Machado A, Rodríguez-Expósito E, López M, Hernández M (2017) Phylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae). ZooKeys 651: 1-77. https://doi.org/10.3897/zookeys.651.10097
Figure 7 - Expanded mitochondrial phylogram of Laparocerus Node D: subclades `Faycanius', 'Machadotrox' and 'Fortunotrox'. Bayesian posterior probabilities above the branches (in red < 0.95, in brackets when adding 28S rRNA to the analysis). Genetic divergence in scale bar. A black triangle (▲) marks the calibration point used for the timetree. An asterisk (*) denotes subterranean species.
Figure 4 from: Machado A, Rodríguez-Expósito E, López M, Hernández M (2017) Phylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae). ZooKeys 651: 1-77. https://doi.org/10.3897/zookeys.651.10097
Figure 4 - Expanded mitochondrial phylogram of the Laparocerus Madeiran clade (Node M). Bayesian posterior probabilities above the branches (in red < 0.95, in brackets when adding 28S rRNA to the analysis). Genetic divergence in scale bar.
Figure 3 from: Machado A, Rodríguez-Expósito E, López M, Hernández M (2017) Phylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae). ZooKeys 651: 1-77. https://doi.org/10.3897/zookeys.651.10097
Figure 3 - Bayesian 50% majority rule consensus tree for COII, 12S rRNA, and 16S rRNA of genus Laparocerus Schönherr, 1834. Nodes showing Bayesian posterior probabilities (after slash, when adding 28S rRNA to dataset). Subclades collapsed and named after subgenera, with number of OTUs in brackets. Total OTUs = 256. Genetic divergence in scale bar.
Figure 2 from: Machado A, Rodríguez-Expósito E, López M, Hernández M (2017) Phylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae). ZooKeys 651: 1-77. https://doi.org/10.3897/zookeys.651.10097
Figure 2 - Geological ages of the Canary Islands and Selvagens (Carracedo 2011), Madeira island (Schmincke 1998), Porto Santo (Geldmacher et al. 2000), and the Desertas (Schwartz et al. 2005) in million of years (Ma).
Figure 1 from: Machado A, Rodríguez-Expósito E, López M, Hernández M (2017) Phylogenetic analysis of the genus Laparocerus, with comments on colonisation and diversification in Macaronesia (Coleoptera, Curculionidae, Entiminae). ZooKeys 651: 1-77. https://doi.org/10.3897/zookeys.651.10097
Figure 1 - Morphological details of Laparocerus Schoenherr, 1834. A Imago of Laparocerus (Bencomius) undatus Wollaston,1864 B Gonostyli of Laparocerus (Purpuranius) longipennis Machado, 2011 C Gonostyli of Laparocerus (Machadotrox) excavatus Wollaston, 1864 D Gonostyli of Laparocerus (Bencomius) undatus Wollaston, 1864 E Male metatibia of Laparocerus (Atlantis) noctivagans Wollaston, 1854 F Male metatibia of Laparocerus (Aridotrox) rasus rasus Wollaston, 1864 G Female sternite VIII of Laparocerus (Pecoudius) grayanus Wollaston, 1864 H Female sternite VIII and H' terguite VIII of L (Canariotrox) estevezi Machado, 2012 I Spermatheca of Laparocerus (Guanchotrox) tafadensis Machado, 2016 J Spermatheca of Laparocerus (Laparocerus) morio Boheman, 1834 K Aedeagus of Laparocerus (Belicarius) longiclava Lindberg, 1953 L Aedeagus of Laparocerus (Pseudatlantis) abditus (Woll. 1864) M Male sternites IX and VII of Laparocerus (Fernandezius) impressicollis Wollaston, 1864 (s.r = spiculum relictum).
Fig. 4 in Morphological and genetic data suggest a complex pattern of inter-island colonisation and differentiation for mining bees (Hymenoptera: Anthophila: Andrena) on the Macaronesian Islands
Fig. 4 Linear discriminant analysis (LDA) with morphometric data of all species of the A. wollastoni group (eigenvalues: LD1 19%, LD2 65%). The ellipses characterise the 95% confidence level. The colours of the specimen labels correspond to those used in Figs. 1, 2
Fig. 7 in Morphological and genetic data suggest a complex pattern of inter-island colonisation and differentiation for mining bees (Hymenoptera: Anthophila: Andrena) on the Macaronesian Islands
Fig. 7 Hypothetical colonisation model of the species of the A. wollastoni-group (continuous line). The colours of the specimen circles correspond to those used to represent constituent taxa in Figs. 1, 2
Fig. 5 in Morphological and genetic data suggest a complex pattern of inter-island colonisation and differentiation for mining bees (Hymenoptera: Anthophila: Andrena) on the Macaronesian Islands
Fig. 5 Principal component analysis of the morphological data. The colours of the specimen labels correspond to those used in Figs. 1, 2 (explained variance PC1: 58.8%, PC2: 19.3%) The black arrows plot-
Supplementary material 3 from: Gehrke B (2018) Staying cool: preadaptation to temperate climates required for colonising tropical alpine-like environments. PhytoKeys 96: 111-125. https://doi.org/10.3897/phytokeys.96.13353
Location of the tropical alpine-like climate regions in the Tropics :
Supplementary material 1 from: Gehrke B (2018) Staying cool: preadaptation to temperate climates required for colonising tropical alpine-like environments. PhytoKeys 96: 111-125. https://doi.org/10.3897/phytokeys.96.13353
Detailed examples on how the coding was done :
Figure 3 from: Gehrke B (2018) Staying cool: preadaptation to temperate climates required for colonising tropical alpine-like environments. PhytoKeys 96: 111-125. https://doi.org/10.3897/phytokeys.96.13353
Figure 3 Proportion of plant elements in tropical alpine regions based on generic distribution patterns according to Smith and Cleef (1988).
Figure 1 from: Gehrke B (2018) Staying cool: preadaptation to temperate climates required for colonising tropical alpine-like environments. PhytoKeys 96: 111-125. https://doi.org/10.3897/phytokeys.96.13353
Figure 1 Location of the tropical alpine-like climate regions in the Tropics on a Mercator projection of the world with shaded relief and coloured height based on SRTM data with 1 arc second resolution. Credit: NASA/JPL/NIMA downloaded from http://photojournal.jpl.nasa.gov/catalog/PIA03395. Detailed maps for each region are included in the Suppl. material 3 (figures S3–S6).
Figure 2 from: Gehrke B (2018) Staying cool: preadaptation to temperate climates required for colonising tropical alpine-like environments. PhytoKeys 96: 111-125. https://doi.org/10.3897/phytokeys.96.13353
Figure 2 Relative contribution of in situ speciation and immigration to species richness in selected tropical alpine regions (pie charts on the left). Blue: in situ speciation, green: colonisation, light blue: uncertainty regarding in situ speciation, light green: uncertainty about colonisation. In the right pie charts, colonisation is further decoupled into species derived from other regions with alpine-like climate (black) and species that originated by colonisation from a different biome (red). Uncertainty is indicated by grey.
Figure 1 in The diversity of ants in moderately isolated islands of Japan: towards understanding of factors affecting their colonisation success
Figure 1. Location of the study islands and the main-island reference regions.
Secondary contacts and genetic admixture shape colonisation by an amphiatlantic epibenthic invertebrate
<p>Research on the genetics of invasive species often focuses on patterns of genetic diversity and population structure within the introduced range. However, a growing body of literature is demonstrating the need to study the native range, and how native genotypes affect both ecological and evolutionary mechanisms within the introduced range. Here we used genotyping-by-sequencing to study both native and introduced ranges [based on 1,653 single nucleotide polymorphisms (SNPs)] of the amphiatlantic marine invertebrate <i>Ciona intestinalis</i>. A previous study using microsatellites analysed samples collected along the Swedish west coast and showed the presence of genetically distinct lineages in deep and shallow waters. Using our SNP data from newly collected samples (285 individuals), we first confirmed the presence of this depth-defined genomic divergence along the Swedish coast. We then used Approximate Bayesian Computation to infer the historical relationship among sites from the North Sea, the English Channel and the northwest Atlantic and found evidence of ancestral divergence between individuals from deep waters off Sweden and individuals from the English Channel. This divergence was followed by a secondary contact that led to a genetic admixture between the ancestral populations (i.e. deep Sweden and English Channel), which originated the genotypes found in shallow Sweden. We then revealed that the colonisation of <i>C. intestinalis</i> in the northwest Atlantic was as a result of an admixture between shallow Sweden and the English Channel genotypes across the introduced range. Our results showed the presence of both past and recent genetic admixture events that together may have promoted the successful colonisations of <i>C. intestinalis</i>. Our study suggests that secondary contacts potentially reshape the evolutionary trajectories of invasive species through the promotion of intraspecific hybridisation and by altering both colonisation patterns and their ecological effects in the introduced range.</p>
Supplementary material 5 from: Bila Dubaić J, Plećaš M, Raičević J, Lanner J, Ćetković A (2022) Early-phase colonisation by introduced sculptured resin bee (Hymenoptera, Megachilidae, Megachile sculpturalis) revealed by local floral resource variability. NeoBiota 73: 57-85. https://doi.org/10.3897/neobiota.73.80343
Results of statistical testing and distribution maps of estimated metrics
Supplementary material 2 from: Palma L, Vasconcelos S, Palmeirim AF, Cancela JP (2023) History of colonisation and updated distribution of the Monarch butterfly Danaus plexippus (Linnaeus, 1758) and its hostplants in mainland Portugal, Azores and Madeira. Nota Lepidopterologica 46: 83-101. https://doi.org/10.3897/nl.46.89665
Georeferenced hostplant patches and patch size
Supplementary material 4 from: Palma L, Vasconcelos S, Palmeirim AF, Cancela JP (2023) History of colonisation and updated distribution of the Monarch butterfly Danaus plexippus (Linnaeus, 1758) and its hostplants in mainland Portugal, Azores and Madeira. Nota Lepidopterologica 46: 83-101. https://doi.org/10.3897/nl.46.89665
Georeferenced butterfly relative abundance records
Studying Respiratory Infections and Colonisation in Children Using Daily Minimally-invasive Nasal Sampling
ClinicalTrials.gov study NCT06049537. IPD Sharing: UNDECIDED. Countries: 1. Publications: 0.
Data from: Is foraging innovation lost following colonisation of a less variable environment? a case study in surface- vs. cave-dwelling Asellus aquaticus
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