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FIGURE 2 in A subspecies of marbled newt (Triturus marmoratus) in the Iberian Peninsula newly resolved from congruent nuclear and mitochondrial DNA data
FIGURE 2 Histograms of Nlink values observed for adults of Triturus m. marmoratus (N = 167, shaded bars) and T. m. harmannis ssp. nov. (N = 635, open bars), with (A) all data and (B) averages for populations with a sample size ≥ 10. (C) Juvenile T. marmoratus from the subspecies transition area (Poço do Inferno near Valongo, Portugal). The photo aims to illustrate the species, and to discuss the usefulness of the character Nlinks for subspecies identification (details see text).
Figure 5 from: Muhammad F, Lü Z-m, Liu L, Gong L, Du X, Shafi M, Kaleri HA (2018) Genetic structure of Octopus minor around Chinese waters as indicated by nuclear DNA variations (Mollusca, Cephalopoda). ZooKeys 775: 1-14. https://doi.org/10.3897/zookeys.775.24258
Figure 5 Median-joining networking drawn based on ODH gene haplotypes. Colours represent the corresponding population frequencies. Key: Dalian; Dongshan; Nantong; Qingdao; Shanghai; Wenzhou; Xiamen; Zhoushan.
Figure 2 from: Muhammad F, Lü Z-m, Liu L, Gong L, Du X, Shafi M, Kaleri HA (2018) Genetic structure of Octopus minor around Chinese waters as indicated by nuclear DNA variations (Mollusca, Cephalopoda). ZooKeys 775: 1-14. https://doi.org/10.3897/zookeys.775.24258
Figure 2 Neighbour-joining phylogenetic tree constructed based on RD gene sequences. Key: DL = Dalian, N = Nantong, Q = Qingdao, S = Shanghai, W = Wenzhou, X = Xiamen, Z = Zhoushan.
Figure 4 from: Muhammad F, Lü Z-m, Liu L, Gong L, Du X, Shafi M, Kaleri HA (2018) Genetic structure of Octopus minor around Chinese waters as indicated by nuclear DNA variations (Mollusca, Cephalopoda). ZooKeys 775: 1-14. https://doi.org/10.3897/zookeys.775.24258
Figure 4 Median-joining networking drawn based on RD gene haplotypes. Colours represent the corresponding population frequencies. Key: Dalian; Dongshan; Nantong; Qingdao; Shanghai; Wenzhou; Xiamen; Zhoushan.
Figure 3 from: Muhammad F, Lü Z-m, Liu L, Gong L, Du X, Shafi M, Kaleri HA (2018) Genetic structure of Octopus minor around Chinese waters as indicated by nuclear DNA variations (Mollusca, Cephalopoda). ZooKeys 775: 1-14. https://doi.org/10.3897/zookeys.775.24258
Figure 3 Neighbour-joining tree constructed based on the ODH gene. Key: DL = Dalian, N = Nantong, Q = Qingdao, S = Shanghai, W = Wenzhou, X = Xiamen, Z = Zhoushan.
Figure 5 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 5 Wisteriopsisjaponica (Siebold & Zucc.) J.Compton & Schrire. A Habit B stipels C lower surface of leaflet D flower bud with bract and bracteoles E flower F1 calyx outer surface F2 calyx inner surface and detail of hairs G standard petal inner surface H wing petal I keel petal J staminal column K ovary and style L pods M pod interior and seed N ventral view of seed O lateral view of seed A–C, E–K from Maximowicz s.n.. 1863 D from Oldham 386, L–O from Togasi MSM1, 1950. Drawn by Margaret Tebbs.
Plate 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Plate 1 Endosamara, Sigmoidala and Kanburia. A, BEndosamararacemosa, Thailand, Sakon Nakhon Prov., S.Mattapha s.n.. C, DSigmoidalakityana Thailand, Nan Prov. S.Mattapha 1117EKanburiachlorantha Thailand, Kanchanaburi Prov. Y.Sirichamorn Y2014-15-1FKanburiatenasserimensis Thailand, Ratchaburi, Khao Chon waterfall Y.Sirichamorn YS2015-8.
Plate 3 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Plate 3 Wisteriopsis and Wisteria. AWisteriopsisjaponica, Cultivated, J.C.Raulston Arboretum, North Carolina 980008-17 BWisteriopsisjaponica Japan, Honshu near Kyoto G.Lewis, unvouchered C, DWisteriopsisjaponica, Cultivated, J.C.Raulston Arboretum, North Carolina 980008-17 EWisteriopsisreticulata Cultivated, J.Compton s.n.. unvouchered FWisteriafrutescens Cultivated, B.Schrire unvouchered GWisteriabrachybotrys cultivated, B.Schrire unvouchered.
Figure 4 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 4 Nanhaiaspeciosa (Champ. ex Benth.) J.Compton & Schrire. A Habit B flower bud with bract and bracteole C calyx exterior and bracteole D detail of calyx exterior E detail of calyx interior F standard petal G wing petal H keel petal I staminal column J staminal column lateral view K stamen ventral and dorsal view L ovary and style M style and stigma N pod O seed lateral view P seed ventral view (all from Shiu Ling Hu 6091). Drawn by Margaret Tebbs.
Figure 2 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 2 Distinctive morphological characters in Tribe Wisterieae. AEndosamararacemosa standard petal inner surface BPadbruggeadasyphylla standard petal inner surface CPadbruggeadasyphylla pod DPadbruggeadasyphylla seed lateral view EAustrocalleryaaustralis standard petal inner surface FAustrocalleryapilipes pod GAustrocalleryapilipes seed lateral view HPadbruggeafilipes standard petal IAfgekiasericea standard petal inner surface JAfgekiasericea seed lateral view KAfgekiasericea seed angled lateral view LCalleryanitida pod MCalleryanitida seed ventral view NCalleryanitida seed polar view OCalleryacinerea pod PWhitfordiodendronnieuwenhuisii pod QWhitfordiodendronerianthum seed RWisteriopsiseurybotrya gibbosity SWisteriopsischampionii gibbosity A from Luang Vanpruk 188 B from Scortechini 429 C, D from Lamb 395/91 E from L.J.Brass 32129 F, G from B.Gray 04319 H from Maung Po Khant 15326 I from C. Chermsirivathana 996 J, K from Mrs Collins 104/9 L–N from Theophilus SampsonO from G.Forrest 19279 P from J.P.Mogea 4182 Q from photo Y.Sirichamorn s.n..R from J. & M.S.Clemens 3637 S from Shiu Ying Hu 10476. See Appendix 1 for voucher details. Drawn by Margaret Tebbs.
Supplementary material 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
: Data type: molecular data
Figure 1 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 1 Combined Maximum Liklihood (ML) and Bayesian Inference (BI) Phylogenetic tree of Tribe Wisterieae. The tree is derived from the combined plastid and ITS, RAxML bipartitions analysis representing 77 (36) ingroup samples (taxa) and 59 (40) outgroup samples (taxa). The outgroup Schefflerodendron is used to root the trees. Lines in bold on the phylogeny incorporate results from the combined Bayesian Inference analysis, demarcating clades with BPP (0.95) support and above. Nodes are marked up with bootstrap values as percentages derived from the combined ML analysis with values of 50% or less marked in red. The collapsed portion of the tree, below the IRLC and above Schefflerodendron, represents the following genera (see Suppl. material 1: Figs S1–S6): Tribe Robinieae (Coursetia, Gliricidia, Poissonia & Poitea); Tribe Sesbanieae (Sesbania), Tribe Loteae (Coronilla, Lotus & Securigera); Tribe Millettieae (Millettia), Tribe Abreae (Abrus); Tribe Phaseoleae (Clitoria & Ophrestia); Tribe Indigofereae (Phylloxylon) and basal millettioids (Austrosteenisia, Disynstemon, Xeroderris & Platycyamus). Tribe Wisterieae is treated within five clades (Clades A–E), colour coded green for Clade A (Sarcodum, Endosamara & Sigmoidala); cyan for Clade B (Nanhaia & Wisteriopsis), red for Clade C (Callerya, Serawaia, Whitfordiodendron, Kanburia & Afgekia); orange for Clade D (Padbruggea & Austrocallerya) and yellow for Clade E (Wisteria). Each clade is further subdivided to represent the genera (except for the single accession of Serawaia which is incorporated with Whitfordiodendron in Clade C2) and E1 and E2 represent the geographical disjunction of species in Wisteria. Outgroups within the IRLC in purple include Glycyrrhiza, Adinobotrys and representatives of the Temperate Tribe block. The ingroup (IRLC) and Tribe Wisterieae are demarcated with arrows on the tree.
Figure 6 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 6 Austrocalleryaaustralis (Endl.) J.Compton & Schrire. A Habit B leaf and detail of leaflet apex C flower buds with bract and 2 bracteoles D flower E calyx external surface F calyx detail of inner surface G standard petal inner surface H wing petal I keel petal J staminal column ventral view K stamens dorsal and ventral views L staminal column lateral view M ovary lateral view N stigma O pod P seed angled lateral view (all from Martin 1392). Drawn by Margaret Tebbs.
Figure 3 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Figure 3 Sigmoidalakityana (Craib) J.Compton & Schrire. A Habit B young leaf C lower surface of leaf D leaflet detail of hairs E inflorescence F flower bud with bracteole and pedicel G calyx external surface H standard petal inner surface I wing petal J keel petal K staminal column lateral view L staminal column ventral view M stamen dorsal and ventral views N ovary lateral view O style and stigma P pod Q pod detail of surface R seed ventral view S seed lateral view (all from Clark 245). Drawn by Margaret Tebbs.
Plate 2 from: Compton JA, Schrire BD, Könyves K, Forest F, Malakasi P, Mattapha S, Sirichamorn Y (2019) The Callerya Group redefined and Tribe Wisterieae (Fabaceae) emended based on morphology and data from nuclear and chloroplast DNA sequences. PhytoKeys 125: 1-112. https://doi.org/10.3897/phytokeys.125.34877
Plate 2 Afgekia, Sarcodum and Padbruggea. AAfgekiamahidoliae, Thailand, Sai Yok distr. Kanchanaburi, Y.Sirichamorn s.n.. B, CAfgekiasericea Thailand S.Mattapha 1158DSarcodumscandens Vietnam, Quang Binh Prov. Lôc & Quang P11554EAfgekiamahidiliae Thailand, Sai Yok distr. Kanchanaburi Y.Sirichamorn s.n.. FSarcodumscandens Vietnam, Quang Binh Prov. Lôc & Quang P11554GSarcodumscandens Laos, Sop Teuang, Bolikhamxai Prov. S.Lanorsavanh 1299H, IPadbruggeafilipes Thailand, Chiang Mai, Y.Sirichamorn & S.Mattapha YSM2017-1.
Figure 1 in Low Variation in Nuclear and Mitochondrial DNA Inhibits Resolution of Invasion Pathways across the Pacific for the Coconut Rhinoceros Beetle (Scarabeidae: Oryctes rhinoceros)
Figure 1. COI haplotype network. TCS Network based on 1480 base pairs of the COI gene region from a total of 127 individuals (8 to 39 from any given location) representing 127 total haplotypes. Hash marks represent a single base pair change. Populations are highly monotypic; Palau is the exception with two haplotypes.
Figure 2. CAD haplotype network. TCS Network based off 814 in Low Variation in Nuclear and Mitochondrial DNA Inhibits Resolution of Invasion Pathways across the Pacific for the Coconut Rhinoceros Beetle (Scarabeidae: Oryctes rhinoceros)
Figure 2. CAD haplotype network. TCS Network based off 814 base pairs of the CAD gene region from a total of 117 samples (8 to 39 from any given location) representing 234 total haplotypes. Hash marks represent a single base pair change. A PHASE algorithm was used to generate haplotypes from ambiguities present in the sequence data of a multi-copy nuclear gene, resulting in twice as many haplotypes as samples.
Table 6 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
<p><b>Table 6.</b> Number and proportion of shared short tandem repeats (STRs) in the rDNA of opalinids. For each species* the total number of STRs (T) and the proportion of STRs species specific (not shared with other sequences) (S)* STRs shared by species of the same genus (G)* and STRs shared by species of different genera (C) are given. Incomplete sequences (those lacking ≥100 bases at the 3 <i>ʹ</i> or 5 <i>ʹ</i> end) are shown in parentheses. Abbreviation: N/A* sequence not available.</p><table><tbody><tr><th><b>Species</b></th><th><b>SSU rDNA</b></th><th><b>ITS1</b></th><th><b>5.8S rDNA</b></th><th><b>ITS2</b></th><th><b>LSU rDNA</b></th></tr><tr><th><b>T</b></th><th><b>S</b></th><th><b>G</b></th><th><b>C</b></th><th><b>T</b></th><th><b>S</b></th><th><b>G</b></th><th><b>C</b></th><th><b>T</b></th><th><b>S</b></th><th><b>G</b></th><th><b>C</b></th><th><b>T</b></th><th><b>S</b></th><th><b>G</b></th><th><b>C</b></th><th><b>T</b></th><th><b>S</b></th><th><b>G</b></th><th><b>C</b></th></tr><tr><th>OPALINIDA</th></tr></tbody><tbody><tr><th>(<i>Protoopalina axonucleata</i>)</th><td>45</td><td>13.3</td><td>35.6</td><td>51.1</td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td></tr><tr><th>(<i>Protoopalina intestinalis</i>)</th><td>52</td><td>11.5</td><td>38.5</td><td>50.0</td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td></tr><tr><th><i>Protoopalina limnocharis</i></th><td>68</td><td>14.7</td><td>29.4</td><td>55.9</td><td>19</td><td>31.6</td><td>68.4</td><td>0</td><td>5</td><td>0.0</td><td>20.0</td><td>80.0</td><td>16</td><td>25.0</td><td>75.0</td><td>0.0</td><td>177</td><td>3.4</td><td>47.5</td><td>49.1</td></tr><tr><th><i>Protoopalina pingi</i></th><td>68</td><td>14.7</td><td>29.4</td><td>55.9</td><td>20</td><td>35.0</td><td>65.0</td><td>0</td><td>5</td><td>0.0</td><td>20.0</td><td>80.0</td><td>15</td><td>20.0</td><td>80.0</td><td>0.0</td><td>179</td><td>4.5</td><td>46.9</td><td>48.6</td></tr><tr><th><i>Zelleriella orientalis</i></th><td>95</td><td>0.0</td><td>41.0</td><td>59.0</td><td>22</td><td>0.0</td><td>95.5</td><td>4.5</td><td>9</td><td>0.0</td><td>33.3</td><td>66.7</td><td>23</td><td>0.0</td><td>91.3</td><td>8.7</td><td>203</td><td>3.5</td><td>23.6</td><td>72.9</td></tr><tr><th><i>Zelleriella</i> sp.</th><td>95</td><td>0.0</td><td>41.0</td><td>59.0</td><td>22</td><td>0.0</td><td>95.5</td><td>4.5</td><td>9</td><td>0.0</td><td>33.3</td><td>66.7</td><td>23</td><td>0.0</td><td>91.3</td><td>8.7</td><td>212</td><td>6.1</td><td>22.7</td><td>71.2</td></tr><tr><th><i>Opalina undulata</i></th><td>104</td><td>12.5</td><td>33.7</td><td>53.8</td><td>26</td><td>80.8</td><td>15.4</td><td>3.8</td><td>8</td><td>0.0</td><td>37.5</td><td>62.5</td><td>25</td><td>44.0</td><td>48.0</td><td>8.0</td><td>213</td><td>10.3</td><td>19.3</td><td>70.4</td></tr><tr><th><i>Opalina triangulata</i></th><td>103</td><td>11.6</td><td>34.0</td><td>54.4</td><td>24</td><td>79.1</td><td>16.7</td><td>4.2</td><td>8</td><td>0.0</td><td>37.5</td><td>62.5</td><td>26</td><td>46.2</td><td>46.2</td><td>7.6</td><td>207</td><td>7.7</td><td>19.8</td><td>72.5</td></tr><tr><th><i>Opalina obtrigonoidea</i></th><td>104</td><td>12.5</td><td>33.7</td><td>53.8</td><td>27</td><td>81.5</td><td>14.8</td><td>3.7</td><td>8</td><td>0.0</td><td>37.5</td><td>62.5</td><td>26</td><td>46.2</td><td>46.2</td><td>7.6</td><td>217</td><td>12.0</td><td>18.9</td><td>69.1</td></tr><tr><th><i>Opalina japonica</i></th><td>103</td><td>11.6</td><td>34.0</td><td>54.4</td><td>25</td><td>80.0</td><td>16.0</td><td>4.0</td><td>8</td><td>0.0</td><td>37.5</td><td>62.5</td><td>29</td><td>51.7</td><td>41.4</td><td>6.9</td><td>215</td><td>11.2</td><td>19.1</td><td>69.7</td></tr><tr><th><i>Opalina longa</i></th><td>105</td><td>13.4</td><td>33.3</td><td>53.3</td><td>20</td><td>75.0</td><td>20.0</td><td>5.0</td><td>8</td><td>0.0</td><td>37.5</td><td>62.5</td><td>25</td><td>44.0</td><td>48.0</td><td>8.0</td><td>213</td><td>10.3</td><td>19.3</td><td>70.4</td></tr><tr><th>PROTEROMONADIDA</th></tr><tr><th><i>Karotomorpha</i> sp. a*b</th><td>52</td><td>36.5</td><td></td><td>63.5</td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td></tr><tr><th><i>Proteromonas lacertae</i> b</th><td>56</td><td>41.1</td><td></td><td>58.9</td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td><td>N/A</td><td></td><td></td><td></td></tr></tbody></table><p><sup>aThe</sup> data presented correspond to the sequence with accession number DQ431242;the <i>Karotomorpha</i> sp. DQ431243 sequence is partial and has not been considered for this analysis.</p><p><sup>bData</sup> are available for only one species per genus;STRs are therefore considered in two categories* as species/genus specific* or as shared with other genera.</p>
Table 5 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
<p><b>Table 5.</b> Types of short tandem repeats (STRs) found in the sequences from opalinids.</p><table><tbody><tr><th><b>Type</b></th><th><b>Characteristics</b></th><th><b>Example</b></th><th><b>Sequence (position)</b></th></tr></tbody><tbody><tr><th>Direct</th><td>Head to tail</td><td></td><td></td></tr><tr><th>Perfect</th><td>All units equal</td><td>TAATAATAATAATAA</td><td><i>Opalina undulata</i> MN 638758 (3423)</td></tr><tr><th>Imperfect</th><td>With substitutions and/or indels</td><td>AGTTT ATTTT AATTT</td><td><i>Zelleriella</i> sp. MN638763 (1762)</td></tr><tr><th>Overlapped</th><td>STR includes bases</td><td>TTTA[T ATTAT]/ [TAT TAT] TAT</td><td><i>Protoopalina limnocharis</i> MN 638759 (1493/1497)</td></tr><tr><th>Inverted</th><td>Head to head</td><td></td><td></td></tr><tr><th>Perfect</th><td>All units equal</td><td>TTTATAATATTT</td><td><i>Opalina triangulata</i> MN 638762 (470)</td></tr><tr><th>Imperfect</th><td>With substitutions and/or indels</td><td>TTATTATTATTATTTTTTTTATTA(-) TATTATT</td><td><i>Opalina japonica</i> MN 638764 (73)</td></tr></tbody></table>
Table 4. Posterior means and 95 in A revised taxonomy and phylogeny of opalinids (Stramenopiles: Opalinata) inferred from the analysis of complete nuclear ribosomal DNA genes
<p><b>Table 4.</b> Posterior means and 95% credibility intervals (CIs) of divergence times (DTs) of Opalinata lineages (in million years) inferred in the TimeTree analysis. Three groups of calibration time points were used to calibrate the molecular clock. Group A (‘sequence evolution’): calibration points with uniform distribution were assigned for the origin of Stramenopiles (1469.6–812.4 Mya) and Ciliophora (1344.0–627.3 Mya) and to the split of Apicomplexa and Dinoflagellata (1098.8–501.9 Mya). Group B (‘host class constraints’): the maximum bounds of the origin of Amphibia (355.7 Mya) and Sauropsida (322.4 Mya) were assigned to the nodes where <i>Karotomorpha</i> (parasite of amphibians) and <i>Proteromonas</i> (parasite of lizards) branched off* respectively. Group C (‘anuran family constraints’): a maximum bound was assigned to the nodes where <i>Protoopalina</i> * <i>Zelleriella</i> * and <i>Opalina</i> branched off* based on the estimated maximum time of emergence of the most ancient anuran family in which species of each genus have been cited (respectively: Ascaphidae * 204 Mya; Microhylidae * 116.3 Mya; Bombinatoridae and Alytidae * 196 Mya). Four scenarios were analysed by combining the groups of calibration time points.</p><table><tbody><tr><th></th><th><b>Scenario 1 (A)</b></th><th><b>Scenario 2 (A + B)</b></th><th><b>Scenario 3 (A + C)</b></th><th><b>Scenario 4 (A + B + C)</b></th></tr></tbody><tbody><tr><th></th><td><b>DT (95% CI)</b></td><td><b>DT (95% CI)</b></td><td><b>DT (95% CI)</b></td><td><b>DT (95% CI)</b></td></tr><tr><th>Opalinata</th><td>586.7 (304.6–1130.1)</td><td>515.7 (267.0–996.0)</td><td>586.7 (304.6–1129.8)</td><td>515.7 (267.0–996.1)</td></tr><tr><th><i>Karotomorpha</i></th><td>351.7 (165.2–748.8)</td><td>309.2 (178.8–355.7)</td><td>351.7 (165.6–746.9)</td><td>309.2 (178.8–355.7)</td></tr><tr><th>Opalinida</th><td>250.4 (110.7–566.5)</td><td>220.1 (119.3–286.8)</td><td>250.4 (112.2–558.6)</td><td>220.1 (119.3–286.8)</td></tr><tr><th><i>Protoopalina</i></th><td>119.4 (48.6–293.5)</td><td>105.0 (56.1–196.6)</td><td>119.4 (55.1–204.0)</td><td>105.0 (56.0–196.9)</td></tr><tr><th><i>Zelleriella – Opalina</i> split</th><td>49.7 (17.4–142.3)</td><td>43.7 (20.1–95.0)</td><td>49.7 (19.8–124.7)</td><td>43.7 (20.4–93.5)</td></tr></tbody></table>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.