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Supplementary Figure S3 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Supplementary Figure S3 Morphometric comparisons (PCA performed on 12 molar measurements (A-B, same analysis as in Figure 4), 24 molar and cranial measurements (C-D), and 12 cranial measurements (E-F)) among Trachypithecus phayrei individuals representing West (red), Central (blue), and East (yellow) clades. Shown is projection of specimen scores on first and second principal components extracted with percentage of variance explained by each component (Tables S7-8). Specimens are clustered by species and represented by maturity (right panels) and sex (left panels) to show the influence of age and sex on comparisons.

Supplementary Figure S4 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Supplementary Figure S4 Dorsal (A), lateral (B), and ventral (C) view of stuffed holotype (NHMUK ZD.1914.7.19.3) of Trachypithecus popa sp. nov. (Photo: Courtesy of the Trustees of the Natural History Museum, London).

Figure 3 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Figure 3 Head-body length (A), tail length (B), and tail/head-body length ratio (C) of adult male and female Trachypithecus phayrei representing West, Central, and East clades (median, quartiles, min-max) Numbers in brackets: sample sizes; post-hoc pair-wise population comparisons of traits; Mann-Whitney U-test, with Bonferroni correction for multiple testing: *: P<0.025, (*): P<0.05; see Supplementary Table S6.

Supplementary Figure S2 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Supplementary Figure S2 Morphometric comparisons (PCA performed on 12 molar measurements) among Trachypithecus phayrei individuals representing West (red), Central (blue), and East (yellow) clades. Shown is projection of specimen scores on first and second versus third (A and B, respectively) principal components extracted (Supplementary Table S7).

Figure 4 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Figure 4 Morphometric comparisons (principal component analysis performed on 12 molar measurements) among Trachypithecus phayrei individuals representing West (red), Central (blue), and East (yellow) clades Shown is projection of specimen scores of first and second principal components, with variance explained by each component (graphical depictions of third principal component appear in Supplementary Figure S2 and underlying statistics are provided in Supplementary Table S7.)

Figure 2 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Figure 2 Mitogenomic tree showing phylogenetic relationships and divergence times among mitochondrial lineages of Trachypithecus (A) and detailed view on T. phayrei (B) Node bars indicate 95% highest posterior densities (HPDs). Node supports of <100% ML BS and <1.0 BI PP are given at respective nodes. In A, species group assignment is given on the right; *: T. crepusculus, a member of the T. obscurus group according to phenotype and nuclear sequence data. In B, sample labels contain individual ID and sample location number (as in Figures 1, 5, Supplementary Table S1). Clade assignment is given on the right. Complete ultrametric tree including all non-Trachypithecus taxa and details on estimated divergence times are provided in Supplementary Figure S1 and Table S4, respectively.

Figure 1 in Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species

Figure 1 Distribution of Trachypithecus phayrei according to IUCN Red List (Bleisch et al., 2020) Numbers indicate sample locations for genetic analysis: 1: Letsegan, 2: Kin, 3: Dudaw-Taung, 4: Ramree Island, 5: near Mount Arakan, 6: Mount Popa, 7: 30 miles northwest of Toungoo, 8: Bago Yoma, 9: South Zamayi Reserve, 10: Myogyi Monastery, 11: Panlaung-Pyadalin Cave Wildlife Sanctuary, 12: Mount Yathae Pyan, 13: Yado, 14: Ho Mu Shu Pass, 15: Gaoligong Mountains National Park, 16: Cadu Ciaung, 17: Ngapyinin, 18: Lamaing, 19: Nattaung, 20: Gokteik, and 21: Se'en (for additional information see Supplementary Table S1). Underlined sites refer to type localities of examined holotypes (16: Presbytis melamera, 21: Pithecus shanicus).

Figs 14–16 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 14–16. Mumetopia interfeles Roháček sp. nov., female paratypes (SMOC MIT076–MIT078). 14. Body of aberrant specimen, lateral view. 15. Right wing. 16. Posterior part of thorax and abdomen, dorsal view. Scale bars = 0.5 mm. Photos by P. Krásenský.

Figs 1–3 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 1–3. Mumetopia interfeles Roháček sp. nov., ♂. 1. Holotype (SMOC MIT001), lateral view. 2. Right wing, paratype (SMOC MIT003). 3. Head and thorax, paratype (SMOC MIT002), laterodorsal view. Scale bars = 0.5 mm. Photos by P. Krásenský.

Fig. 32 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Fig. 32. Bayesian hypothesis for relationships of 64 species of Anthomyzidae based on DNA sequence data (12S, 16S, 28S, COI, COII, CytB, ITS2) representing 4583 characters. Numbers above nodes = posterior probability values if> 0.5, and below nodes = bootstrap support values for RAxML.

Figs 17–21 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 17–21. Mumetopia interfeles Roháček sp. nov., female paratypes (SMOC MIT080–MIT083). 17. Abdomen, dorsal view. 18, 21. Spermatheca. 19. Genital chamber and S8, lateral view. 20. Same, ventral view (setosity of S8 omitted). Scale bars: 17 = 0.2 mm; 18, 21= 0.05 mm; 19–20 = 0.1 mm. For abbreviations see Material and methods.

Figs 9–13 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 9–13. Mumetopia interfeles Roháček sp. nov., male paratypes (SMOC MIT005, MIT006). 9. Gonostylus, posterolateroventral view (widest extension view). 10. Hypandrial complex, lateral view. 11. Transandrium, caudal view. 12. Filum of distiphallus, anteroventral view. 13. Aedeagal complex, lateral view. Scale bars: 9, 12 = 0.05 mm; 10–11, 13 = 0.1 mm. For abbreviations see Material and methods.

Figs 29–31. Maps and habitat. 29 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 29–31. Maps and habitat. 29. Map of Chile with position of type locality of Mumetopia interfeles Roháček sp. nov. (blue open square). 30. Satellite view of part of Valparaíso city, with collecting site indicated by red arrow. 31. Habitat of M. interfeles sp. nov., northern end of grassy area between houses visited by cats. Photo by J. von Tschirnhaus (31), other sources: Vemaps.com (29), Google Earth Pro (30).

Figs 4–8 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 4–8. Mumetopia interfeles Roháček sp. nov., male paratypes (SMOC MIT004–MIT007). 4. Postabdomen with fifth abdominal segment, dorsal view. 5. Same, ventral view. 6. External genitalia, caudal view. 7. Postabdomen with fifth abdominal segment, lateral view. 8. Genitalia, lateral view. Scale bars: 4–5, 7 = 0.2 mm; 6, 8 = 0.1 mm. For abbreviations see Material and methods.

Fig. 34 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Fig. 34. Most parsimonious tree (L = 34 steps, CI = 0.85, RI = 0.82) resulting from cladistic morphological analysis of the Chamaebosca clade, ACCTRAN optimization. Full circles = non-homoplasious character transformations; empty circles = homoplasious character transformations. Numbers below branches indicate change to apomorphic (1, 2) or plesiomorphic (0) states of characters (reversals in case of (0)). Adapted from Roháček & Barber (2009: fig. 38).

Fig. 33 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Fig. 33. RAxML hypothesis for relationships of Anthomyzidae based on DNA sequence data (12S, 16S, 28S, COI, COII, CytB, ITS2) representing 4583 characters, without the Anthomyza group of genera clade displayed. Numbers below nodes = bootstrap support values.

Figs 22–28 in Mumetopia interfeles sp. nov., a new species of Anthomyzidae (Diptera) occurring en masse in an urban grassy habitat in Chile: its taxonomy, phylogeny and biology

Figs 22–28. Mumetopia interfeles Roháček sp. nov., paratypes (SMOC MIT002–MIT006, MIT081– MIT083). 22. ♂, f 1, posterior view. 23. Female postabdomen, lateral view. 24. Same, dorsal view. 25. Same, ventral view. 26. Apex of male t2 and base of mid basitarsus, anterior view. 27. Apex of male t 3 and hind basitarsus with 3 thickened ventrobasal setulae (black arrow), anterior view. 28. Male f 3, anterior view. Scale bars: 22, 26–28 = 0.2 mm; 23–25 = 0.1 mm. For abbreviations see Material and methods.

opencc-zeroJul 2016View details →

Supporting voucher images for Phylogeny, ecology, morphological evolution, and reclassification of the diatom orders Surirellales and Rhopalodiales

A compressed directory of images of voucher specimens used for sequencing and phylogenetic analysis.

opencc-zeroSep 2016View details →

Nexus and data files for Pokemon Evolutionary Phylogeny

Data files associated with the following publication: Matan Shelomi, Andrew Richards, Ivana Li, Yukinari Okido. (2012) “A Phylogeny and Evolutionary History of the Pokémon.” Annals of Improbable Research, 18(4): 15-17. Free to use for educators and researchers hoping to use the Pokémon to teach evolution, phylogenetics, etc. Cite in publications as you see fit. These datasets contain Pokémon up to the 5th generation. Researchers are welcome to produce new, updated datasets so long as they cite our original work, either this dataset and/or the Annals of Improbable Research paper.