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4,483 results for “rat”
Figure 6 in Expanding Population Edge Craniometrics and Genetics Provide Insights into Dispersal of Commensal Rats through Nusa Tenggara, Indonesia
Figure 6. Summary of likely movements of the three commensal rodents through the Nusa Tenggara island chain. Rat illustrations redrawn and adapted from R. Budden, location of RS3 Dong Song drums from Calo (2014).
Figure 5 in Reproductive Biology of the Mice and Rats (Family Muridae) in New Guinea-Diversity and Evolution
Figure 5. Light micrographs of spermatozoa from (a) Leptomys elegans, (b) Melomys rufescens, (c) Pogonomys championi, (d) Pogonomys loriae, (e) Abeomelomys sevia, (f) Anisomys imitator, and (g) Rattus steini. Scale bars a = 4 µm, b–g = 5 µm.
Data from: Single-nucleus RNA-seq and ATAC-seq in outbred rats with divergent cocaine addiction behaviors reveal long-term changes in gene regulation and GABAergic inhibition in the amygdala
<p>This dataset accompanies our publication titled: "Single-nucleus RNA-seq and ATAC-seq in outbred rats with divergent cocaine addiction behaviors reveal long-term changes in gene regulation and GABAergic inhibition in the amygdala."</p> <p><strong>Files Included:</strong></p> <p><strong>1. geno.N26.vcf.gz</strong><br> - Description: Contains genotypes for 26 Heterogeneous Stock rats whose gene expression was predicted.</p> <p><strong>2. pred_expr.Brain.N26.tsv</strong><br> - Description: This tab-delimited table contains predicted relative gene expression in the brain for 26 Heterogeneous Stock rats. <br> - Details: Predictions were made for 8,997 genes from linear models based on cis-eQTLs from whole brain hemisphere tissue downloaded from the <a href="https://ratgtex.org/download/">RatGTEx Portal</a>. A gene is included in the table if it had at least one significant cis-eQTL, and if its predicted expression in these 26 animals had nonzero variance. The values in the table give the predicted log2(relative expression), where log2(2) = 1 is the baseline expression from the two haplotypes of the gene if it had only reference alleles at all its regulatory loci.<br> - Additional Info: Predictions were generated using <strong>gene_expr_pred.py</strong> available at https://github.com/PejLab/gene_expr_pred<br> An explanation of the prediction model is given in https://doi.org/10.1101/2022.01.28.478116</p> <p><strong>3. Behavioral data.xlsx</strong><br> - Description: Contains behavioral data for the Heterogeneous Stock (HS) rats.<br> - Organization: Each sheet in the file corresponds to data for a specific figure.</p> <p><strong>Additional Dataset Locations:</strong></p> <p>The primary datasets generated during this study can be found on the Gene Expression Omnibus under accession number <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE212417">GSE212417</a></p> <p><strong>Publicly Available Datasets Utilized:</strong></p> <p>- Rattus norvegicus Ensembl v98 reference genome and genome assembly: <a href="http://useast.ensembl.org/Rattus_norvegicus/Info/Index">Rnor_6.0 </a><br> - JASPAR2022 transcription factor binding profiles for vertebrates: <a href="https://jaspar.genereg.net/">JASPAR</a><br> - ENCODE Honeybadger 2 ChIP-seq: <a href="https://personal.broadinstitute.org/meuleman/reg2map/">Broad Institute</a><br> - Liu et al. 2019106 GWAS for tobacco and nicotine addiction summary statistics: <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6358542/">PubMed</a><br> - RatGTEx Portal tissue-specific cis-eQTLs: <a href="https://ratgtex.org/download/">RatGTEx Portal </a><br> - 1000 Genomes European reference panel: <a href="https://alkesgroup.broadinstitute.org/LDSCORE/">Alkes Group</a><br> - KEGG pathways: <a href="https://www.kegg.jp/kegg/rest/keggapi.html">KEGG API</a></p>
Single-Band or Dual-Band Pi-Type Rat-Race and Branch-Line Coupler Designer
<p>Using this software, one can design single or dual-band rat-race or branch-line coupler using Pi topology.</p> <p> </p> <h2>How to use Pi Coupler Designer for Single/Dual-Band BLC and RRC:</h2> <ol> <li>Download <table> <tbody> <tr> <td> <div><a href="../api/records/8278306/draft/files/Pi_Coupler_Designer.rar/content" target="_blank" rel="noopener noreferrer">Pi_Coupler_Designer.rar</a></div> </td> </tr> </tbody> </table> </li> <li>Extract the rar file.</li> <li>Open the Pi_Coupler_Designer.exe file in Windows 11</li> <li>Maximize the window. Display resolution 1200X600 or more is preferred.</li> <li>Users can switch between BLC and RRC using the Coupler menu.</li> <li>At first, select the band: Single-Band/Dual-Band.</li> <li>Select PS for RRC: Ideal-Phase-Inv/C-Section/Pi-Section/T-Section/ex-Pi-section.</li> <li>Enter f0, n, phi and TLip: Ch imp/ El len for single band design.</li> <li>Then, enter Z_beta or theta_beta and other parameters.</li> <li>Enter f1,f2, n1,n2 for dual-band design.</li> <li>Press the Design button to get the design schematic. </li> <li>Press the analysis button to get the S-parameters results. Users can switch the excitation port and Response type.</li> <li>For additional queries, write to r.sinha30@gmail.com</li> </ol>
Disentangling developmental effects of play aspects in rat rough-and-tumble play
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Antipredator responses towards cat fur in wild brown rats tested in a semi-natural environment
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scRNA-seq of CD45+ cells from salivary gland of Aire-knockout rats
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Naked mole rats have distinctive cardiometabolic and genetic adaptations to their underground low-oxygen lifestyles (genetic data)
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Data from: Restoring failed inhibition in the substantia nigra pars reticulata suppresses absence seizures in rats
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scRNA-seq of thymic epithelial cells from Aire-knockout rats
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scRNA-seq of splenic CD45+ Cells from Aire-knockout rats
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Data from: Lorcaserin-induced rat mammary mutants quantified by CarcSeq
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Data for: Kin recognition for incest avoidance in Damaraland mole-rats, Fukomys damarensis
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Data from: An approach for long-term, multi-probe Neuropixels recordings in unrestrained rats
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Transcriptome Profiling of CD4+ T cell subpopulations from Aire-Knockout Rats
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Characteristics of the urban sewer system and rat presence in Seattle
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Transcriptome profiling of medullary thymic epithelial cells from Aire-knockout rats
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Data for: Population genomics and conservation management of the threatened black-footed tree-rat (Mesembriomys gouldii) in northern Australia
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Supplementary data for: Comparison of transcriptomic profiles between HFPO-DA and prototypical PPARa, PPARg, and cytotoxic agents in mouse, rat, and pooled human hepatocytes
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Data from: Using genetic relatedness to understand heterogeneous distributions of urban rat-associated pathogens
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.