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FIGURE 5 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 5. Branches pruned from Bayesian majority-rule consensus phylogram, diamonds represent posterior probabilities> 0.90. Numbers following species names in parenthesis represent population sample numbers. A. Branch containing Desmognathus organi and D. wrighti. B. Branch containing Desmognathus imitator. C. Branch containing Desmognathus aeneus.
FIGURE 3 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 3. Bayesian majority-rule consensus phylogram. Genealogically exclusive clades are collapsed and labeled to match those in Kozak et al. 2005b. Previously unsampled genealogically exclusive clades have been given the next available letter. Posterior probabilities greater than 0.90 are indicated by diamonds.
FIGURE 21 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 21. Sampling localities for Desmognathus santeetlah and all populations of D. conanti from east of the Mississippi River, symbols match those in Fig. 20A, Fig. 20B and Fig. 20C.
FIGURE 25. Sampling localities for Desmognathus welteri and D in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 25. Sampling localities for Desmognathus welteri and D. planiceps, symbols match those in Fig. 18E and Fig. 18G respectively.
FIGURE 24 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 24. Sampling localities for Desmognathus fuscus (exclusive of those populations characterized by D. carolinensis mtDNA haplotypes), symbols match those in Fig. 23.
FIGURE 15 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 15. Sampling localities for southern populations of Desmognathus monticola, symbols match those in Fig. 14B.
Figure 1 in Cytochrome c oxidase subunit I barcode species delineation methods imply critically underestimated diversity in 'common' Hermeuptychia butterflies (Lepidoptera: Nymphalidae: Satyrinae)
Figure 1. Distribution map of barcoded Hermeuptychia specimens. White dots indicate localities where previously published specimens were collected. Black dots indicate new localities of specimens examined in this study. Top-right inset shows a magnified view of Ecuador, which was the source for the majority of samples. Figured butterflies are Hermeuptychia species (top, from Ecuador, Loja) and Hermeuptychia clara (bottom, from Ecuador, Zamora-Chinchipe).
Figure 4 in Gorgocephalidae (Digenea: Lepocreadioidea) in the Indo-West Pacific: new species, life-cycle data and perspectives on species delineation over geographic range
Figure 4. Bayesian majority-rule consensus tree of the ITS2 single-gene alignment. Bayesian inference (BI) posterior probabilities and maximum likelihood (ML) bootstrap support shown at nodes. An asterisk indicates different topology recovered in ML analysis. The scale-bar indicates the number of substitutions per site.
Figure 10. Gorgocephalus yaaji. A in Gorgocephalidae (Digenea: Lepocreadioidea) in the Indo-West Pacific: new species, life-cycle data and perspectives on species delineation over geographic range
Figure 10. Gorgocephalus yaaji. A, adult voucher ex Kyphosus cinerascens, Sodwana Bay, KwaZulu-Natal, South Africa; ventral perspective. B, genital atrium, cirrus-sac and ovarian complex of adult voucher ex Kyphosus vaigiensis, Sodwana Bay; ventral perspective. C, genital atrium, cirrus-sac and ovarian complex of adult voucher ex Kyphosus cinerascens, Rangiroa, Tuamotu Islands, French Polynesia; ventral perspective. D, redia ex Echinolittorina cinerea, Rangiroa; lateral perspective. E, excised cercaria ex Echinolittorina cinerea, Rangiroa; ventral perspective. F, adult voucher ex Kyphosus cinerascens, Rangiroa; ventral perspective. Scale bars: A, F, 500 µm; B, C, D, E, 250 µm.
Figure 1 in Gorgocephalidae (Digenea: Lepocreadioidea) in the Indo-West Pacific: new species, life-cycle data and perspectives on species delineation over geographic range
Figure 1. Map of Indo-West Pacific collection localities where specimens of the digenean family Gorgocephalidae were obtained for the present study. Adult specimens were obtained at all localities except for Kioloa, NSW, Australia. At this locality, intramolluscan specimens had been obtained from littorinid gastropods for the study of Huston et al. (2016); genomic DNA from this previous study was used for the generation of additional COI mtDNA gene sequences in the present work.
Fig. 5 a in Outdated but established?! Conchologically driven species delineations in microgastropods (Carychiidae, Carychium)
Fig. 5 a Range of conchological variability for the parameters shell height (x-axis) and the ratio shell height/width (y-axis). The eight most characteristic specimens per morphospecies are indicated by a circle (Carychium mariae), square (C. minimum) and triangle (C. tridentatum), respectively. Dark grey, more typical C. tridentatum specimens; light grey, more typical C. mariae specimens; typical C. minimum individuals are in between those two extremes. b Neighbor-joining
Fig. 3 in Outdated but established?! Conchologically driven species delineations in microgastropods (Carychiidae, Carychium)
Fig. 3 FE-SEM image of typical morphospecies Carychium mariae Paulucci, 1878 (frontal view) from locality 5
Fig. 4 in Mitochondrial DNA sequences suggest unexpected phylogenetic position of Corso-Sardinian grass snakes (Natrix cetti) and do not support their species status, with notes on phylogeography and subspecies delineation of grass snakes
Fig. 4 Geographic distribution of mitochondrial clades in grass snakes. Symbols correspond to Fig. 1
Fig. 1 in Mitochondrial DNA sequences suggest unexpected phylogenetic position of Corso-Sardinian grass snakes (Natrix cetti) and do not support their species status, with notes on phylogeography and subspecies delineation of grass snakes
Fig. 1 Maximum likelihood (ML) tree for Natrix sequences calculated with RAxML based on 3,806 bp of mtDNA (ND1, ND2, ND4, cyt b). Numbers above nodes are thorough bootstrap values (RAxML); below nodes, Bayesian posterior probabilities and bootstrap values obtained under maximum parsimony (MP; not shown for some terminal clades with short branch lengths). For new samples, voucher codes (Table 1)
Fig. 3 in Mitochondrial DNA sequences suggest unexpected phylogenetic position of Corso-Sardinian grass snakes (Natrix cetti) and do not support their species status, with notes on phylogeography and subspecies delineation of grass snakes
Fig. 3 Estimated split ages of grass snake clades and their 95% HPD intervals (grey bars). Narrow grey bars are derived from the dating approach using the post-Messinian reopening of the Strait of Gibraltar as age constraint (calibration point I); wide grey bars, using the Sardinian fossil node constraint (calibration point II). Numbers along nodes refer to Table 2; see there for exact values. The depicted nodal ages are based on calibration point I
Fig. 2 in Mitochondrial DNA sequences suggest unexpected phylogenetic position of Corso-Sardinian grass snakes (Natrix cetti) and do not support their species status, with notes on phylogeography and subspecies delineation of grass snakes
Fig. 2 Parsimony networks for haplotypes of Natrix natrix helvetica, N. n. lanzai, a N. n. helvetica x natrix hybrid (left) and Corso-Sardinian grass snakes (right) based on 3,806 bp of mtDNA (ND1, ND2, ND4, cyt b). The large symbol for N. n. helvetica indicates that this haplotype was found twice; small black circles, missing node haplotypes. Connections between haplotypes show number of mutation steps. Connection of haplotypes in left network enforced; 95% connection limit: 27 steps
Species delineation, phylogeography, and conservation of WA perches
Open the record for dataset details and reuse information.
Figure 2. A in Delineating the fishes of the Clinus superciliosus species complex in southern African waters (Blennioidei: Clinidae: Clinini), with the validation of Clinus arborescens Gilchrist & Thompson, 1908 and Clinus ornatus Gilchrist & Thompson, 1908, and with descriptions of two new species
Figure 2. A, Clinus arborescens, Skoenmakerskop, aquarium photograph (M. J. Smale); B, orbital cirri; C, Clinus exasperatus sp. nov., SAIAB 98635, holotype, male, 127 mm SL, Betty's Bay (drawn by Elaine Heemstra); D, orbital cirri; E, Clinus exasperatus, photograph of holotype (Sophie von der Heyden).
FIGURE 9 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 9. Sampling localities for Desmognathus quadramaculatus, symbols match those in Fig. 8.
FIGURE 1 in Towards rectifying limitations on species delineation in dusky salamanders (Desmognathus: Plethodontidae): An ecoregion-drainage sampling grid reveals additional cryptic clades
FIGURE 1. Collection localities.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.