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Data and analysis code for: Global protected areas seem insufficient to safeguard half of the world's mammals from human-induced extinction
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Long-term small mammal community dynamics in Northern Chihuahuan Desert grassland and shrubland ecotones
Sevilleta LTER data-sets 129 and 008 (http://sev.lternet.edu/data/sev-129, -008), sevilleta_species_list.csv from dp2 and Met_all.csv from dp1 were utilized in "Final Figure One Code.R" to calculate precipitation (A), percent cover (B) and rodent abundances (C) for the Creosote and Black Grama core sites. To generate a multi-panel figure (Figure 1). Sevilleta LTER data-set 008 was utilized in "Final Figure Two Code.R" to show non-metric multidimensional scaling between rodent foraging guilds in grassland versus shrubland to generate a two panel figure (Figure 2). Sevilleta LTER data-set 008 was utilized in "Final Figure Three Code Table 1 and 2.R" to assess comunity dynamic metrics (Package CoDyn in R) illustrating species richness, turnover, mean rand shift, and temporal changes in community composition of small mammals in each of the core sites. SIMPER analysis to calculate contributions of species to dissimilarities between the two habitats were run, and values were inserted into the final paper. Community Stability Metrics (CoDyn) such as stability, synchrony, and variance were run, and values inserted into a table in the final paper. "Final Analysis Code.R" utilizes Sevilleta LTER data-sets 129 and OO8, sevilleta_species_list.csv, and Met_all.csv to conduct linear regressions, ANOVA, and significance testing to describe differences between the Heteromyid and Cricetid communities in both the grassland and shrubland. Three tables are generated for possible further analysis, but they are not utilized in this paper. All significant values were utilized, but not output as an additional table.
Small mammals surveys, 1981 - 1996, Adirondack Long-Term Ecological Monitoring Program Project No. 10 by Adirondack Ecological Center of the State University of New York College of Environmental Science and Forestry, Newcomb, New York. Environmental Data Initiative
Small mammals are important in forested ecosystems: they are key predators on seeds and invertebrates, provide food for larger predators and act as disease vectors. The objective of this study was to document small mammal abundance and population changes in managed and unmanaged forests of Huntington Wildlife Forest (HWF). Seven sites were sampled from 1981-1996. Fifty traps per site (250 total) were deployed for 4 nights and checked in the mornings. All captured small mammals were identified, sexed, weighed, and measured for reproductive condition, tagged, and brought into the lab for processing. Females with embryos or placental scars were noted in the lab. Over a five-year period, 671 deer mice; 261 woodland jumping mice, 594 southern redbacked voles, 248 short-tailed shrews, 373 masked shrews, 75 smoky shrews and small numbers of other species were captured and sexed/aged. According to Prachar and Sage (1988), weights of deer mice, redbacked voles, woodland jumping mice, short-tailed shrews, masked shrews and smoky shrews differed among years and age classes for 1983-1987. Weights differed between sexes for mice and voles but not shrews. Placental scar/embryo counts of mice and voles did not differ among years, habitats, mammal age classes or sexes. Reproductive rates of shrews exhibited patterns of fluctuation from 1983-1987.
CSM01 Seasonal Summary of Numbers of Small Mammals on 14 LTER Traplines in Prairie Habitats at Konza Prairie (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/343/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-knz/88/8. The abstract below was extracted from the Level 0 data package and is included for context: Data set contains seasonal summaries (spring and autumn) of the number of individuals of each species of small mammal captured (relative abundance) on each grassland trapline. Each record contains year, season, trapline and number of individuals captured of each species. These live trap records are based on daily captures during two 4-day trapping periods in spring (late February to early April) and autumn (early October to mid-November) for each of 14 permanent traplines established on seven fire-grazing treatments (two traplines per treatment). These seven fire-grazing treatments include three sites that are grazed by bison (1 unburned, 1 annual burn and 1 4-year burn) and four sites that are not grazed by bison (1 unburned, 1 annual burn and 2 4-year burn).
Long Term Mammal Data from Powdermill Biological Station 1979-1999 (Reformatted to a Darwin Core Archive)
This data package is formatted as a Darwin Core Archive (DwC-A, event core). For more information on Darwin Core see https://www.tdwg.org/standards/dwc/. This Level 2 data package was derived from the Level 1 data package found here: https://pasta.lternet.edu/package/metadata/eml/edi/356/2, which was derived from the Level 0 data package found here: https://pasta.lternet.edu/package/metadata/eml/knb-lter-vcr/67/20. The abstract below was extracted from the Level 0 data package and is included for context: This is a 20-year record of small mammal trapping from the Powdermill Biological Station, Rector, PA 15677 collected by Joseph F. Merritt. It is included here as a comparative source of small mammal data.
Mammal species list of the Andrews Experimental Forest, 1971 to 1976
This is a compilation of mammal species currently known to be present within the H.J. Andrews Experimental Forest. This list includes scientific name, common name, relative abundance, general elevational distribution, and habitat for each species.
Vertebrate-habitat relationships: Logistic regression models predict probability of occurrence of bird and small mammal species in western Oregon
Logistic regression models predicting probability of occurrence of bird and of small-mammal species were produced using animal-habitat data sets from throughout western Oregon (Garman and Cole 1999 - Vertebrate Habitat Relationships Data Bank (VHRDB), Report to Coastal Landscape Analysis and Modeling Study). Regression coefficients, variables, and metrics related to model predictions are provided here under Entity 1, and in VHRDB as VERTLOGR.
Gunnison's Prairie Dog Restoration Experiment (GPDREx): Small Mammal Mark-Recapture Population Assessment within Grasslands at the Sevilleta National Widlife Refuge, New Mexico (2013-2014)
Prairie dogs (Cynomys spp.) are burrowing rodents considered to be ecosystem engineers and keystone species of the central grasslands of North America. Yet, prairie dog populations have declined by an estimated 98% throughout their historic range. This dramatic decline has resulted in the widespread loss of their important ecological role throughout this grassland system. The 92,060 ha Sevilleta NWR in central New Mexico includes more than 54,000 ha of native grassland. Gunnison’s prairie dogs (C. gunnisoni) were reported to occupy ~15,000 ha of what is now the SNWR during the 1960’s, prior to their systematic eradication. In 2010, we collaborated with local agencies and conservation organizations to restore the functional role of prairie dogs to the grassland system. Gunnison’s prairie dogs were reintroduced to a site that was occupied by prairie dogs 40 years ago.  This work is part of a larger, long-term study where we are studying the ecological effects of prairie dogs as they re-colonize the grassland ecosystem. With this project, we would like to further investigate the impact that Gunnison’s prairie dogs have on the landscape. Gunnison’s prairie dog monitoring data has been collected from the beginning of the reintroduction project, but little information has been collected on how grassland species respond to the sudden presence of prairie dogs on the refuge. This project will help determine if the prairie dog reintroduction has had positive impacts on the grassland ecosystem. Prairie dogs benefit grasslands in many ways, but their role as ecosystem engineers directly impacts other species by creating new habitat that would not be present without prairie dogs. We have documented physical landscape changes, but we have not specifically documented benefits to other grassland species. This work will help determine if the reintroduced prairie dog populations on Sevilleta NWR are now acting as a keystone species in a grassland ecosystem by monitor
Small Mammal Exclosure Study (SMES) Ant Data from Chihuahuan Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico (1995-2005)
Animal consumers have important roles in ecosystems, determining plant species composition and structure, regulating rates of plant production and nutrients, and altering soil structure and chemistry. This is data for numbers and species of seed harvester ant nests mapped from each of the SMES study plots. Seed harvester ant nests were mapped on each of the study plots once each year in the autumn. Ant nest maps were drawn on to pre-designed plot diagrams. Each nest was located on the diagram in reference to one of the 36 vegetation quadrat marker posts. The distance from the post, direction from the post, and species name were plotted on the map diagram. Data such as total numbers of nests of each ant species, and spatial arrangement of nests, were then taken from the diagram maps. The following question was asked: Do small mammals interact with other herbivore and granivore consumers enough to affect the species composition and abundances of other consumers such as ants?
Small Mammal Exclosure Study (SMES) Termite Mud Casing Data from Chihuahaun Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico (1996-2005)
The purpose of this study is to determine whether or not the activities of small  mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands. What role if any do indigenous small mammal consumers have in maintaining desertified landscapes in the Chihuahuan Desert? Additionally, how do the effects of small mammals interact with changing climate to affect vegetation patterns over time? This is data for amounts of termite mud casing measured on each of the SMES study plots. Three-dimensional measurements were made from all termite mud casing present on each of the 36 one-meter2 quadrats twice each year when vegetation was measured.
Small Mammal Exclosure Study (SMES) Cryptogamic Crust Data from Chihuahuan Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico (1995-2005)
The purpose of this study is to determine whether or not the activities of small mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands. What role if any do indigenous small mammal consumers have in maintaining desertified landscapes in the Chihuahuan Desert? Additionally, how do the effects of small mammals interact with changing climate to affect vegetation patterns over time? This is data for soil surface cover of cryptobiotic (cryptogam) crusts measured on each of the SMES study plots. Cryptobiotic crusts were measured from each of the 36 one-meter2 quadrats twice each year when vegetation was measured. Cryptobiotic crusts include lichens, mosses, algae, brown algae, and cyanobacteria that form crusts on stable soil surfaces.
Small Mammal Exclosure Study (SMES) Vegetation Line Intercept from Chihuahuan Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico (1995-2005)
The purpose of this study is to determine whether or not the activities of small mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands. What role if any do indigenous small mammal consumers have in maintaining desertified landscapes in the Chihuahuan Desert? Additionally, how do the effects of small mammals interact with changing climate to affect vegetation patterns over time? This is data for perennial plant vegetation canopy cover measured from all SMES study plots, fall 1995 and fall 2005. The purpose of this data is to provide ground-truth data for comparison with low-level aerial photographs of each study plot. Three, 29 meter lines were measured along three of six rows of the permanent vegetation measurement quadrats. Each line was measured at 10cm resolution for intercepts of perennial plant live canopy cover, and for bare ground. 10cm resolution is comparable to the resolution of the aerial photos. All plants were identified to the species level. These line-intercept measurements are taken once every ten years, at the same time that low-level aerial photographs are taken. These data will be compared to both decadal air photos, and annual measures ofvegetation from one-meter2 quadrats on each plot to provide information on vegetation change over time relative to the various animal exclosure treatments.
Small Mammal Exclosure Study (SMES) Leaf Litter Study in the Chihuahuan Desert Grassland and Shrubland at the Sevilleta National Wildlife Refuge, New Mexico
The purpose of this study is to determine whether or not the activities of small mammals regulate plant community structure, plant species diversity, and spatial vegetation patterns in Chihuahuan Desert shrublands and grasslands. What role if any do indigenous small mammal consumers have in maintaining desertified landscapes in the Chihuahuan Desert? Additionally, how do the effects of small mammals interact with changing climate to affect vegetation patterns over time? This is data for cover of dead plant leaf litter accumulations on soil surfaces measured on each of the SMES study plots. Leaf litter cover was measured from each of the 36 one-meter2 quadrats twice each year when vegetation was measured.
SGS-LTER Long-Term Montioring Project: Arthropod Pitfall Trapping on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1998-2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83450. With the exception of heteromyids, eg kangaroo rats and pocket mice, most small rodents in shortgrass steppe are omnivorous. Depending on season, arthropods (insects and arachnids) make up 40-85% of the diet of grasshopper mice and thirteen-lined ground squirrels, the most widespread rodents in northern shortgrass steppe. Small mammals are among the most important predators of ground-dwelling macroarthropods and herbivorous insects provide a direct resource link between weather and plant production. Understanding temporal variability in the abundance of arthropods is central to determining the mechanisms that drive small rodent populations. At present, there are no long-term studies of arthropods in shortgrass steppe, despite the important role that these taxa play in grassland food webs. Beginning in 1998, we implemented field protocols to track changes in relative abundance of terrestrial macroarthropods in grassland and shrub-dominated habitats of shortgrass steppe. Sampling was conducted on the six trapping webs (three upland prairie, three lowland saltbush) where we studied rodent populations, and was conducted approximately monthly from May-September (4-5 sessions/ye
SGS-LTER Long-Term Monitoring Project: Small Mammals on Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1994 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83452. Small mammals (rabbits, rodents) are integral components of semiarid ecosystems because of their roles as consumers of plants, seeds and arthropods, as soil disturbance agents, and as food for raptors, snakes and mammalian carnivores. Because of their vagility and intermediate trophic position, populations of small mammals may track changes in vegetation and the abiotic environment that may result from shifts in land-use and other anthropogenic disturbances. However, these populations are variable over space and time, and their response to environmental changes may not be immediately apparent given their behavioral flexibility and relatively long life-spans and generation times. Patterns in the distribution and abundance of small mammals thus may simultaneously reflect and affect the stability of the shortgrass-steppe ecosystem. Long-term studies of population and community dynamics therefore are needed to fully understand the role of small mammals in grassland ecosystems. In 1994, we implemented a sampling scheme to monitor long-term changes in relative abundance of small mammals in representative habitats of shortgrass steppe. We live-trapped nocturnal rodents twice each
SGS-LTER Long-Term Monitoring Project: Spermophilus tridecemlineatus on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83456. Small mammals (rabbits, rodents) are integral components of semiarid ecosystems because of their roles as consumers of plants, seeds and arthropods, as soil disturbance agents, and as food for raptors, snakes and mammalian carnivores. Because of their vagility and intermediate trophic position, populations of small mammals may track changes in vegetation and the abiotic environment that may result from shifts in land-use and other anthropogenic disturbances. However, these populations are variable over space and time, and their response to environmental changes may not be immediately apparent given their behavioral flexibility and relatively long life-spans and generation times. Patterns in the distribution and abundance of small mammals thus may simultaneously reflect and affect the stability of the shortgrass-steppe ecosystem. Long-term studies of population and community dynamics therefore are needed to fully understand the role of small mammals in grassland ecosystems. Thirteen-lined ground squirrels (Spermophilus tridecemlineatus, SPTR) are the most widely distributed rodent species in shortgrass steppe and the most important in terms of abundance and biomass. Like mo
SGS-LTER Long-Term Monitoring Project: Vegetation Cover on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83458. The abundance and diversity of small mammals in shortgrass steppe is strongly influenced by the structure and composition of vegetation. Vegetation structure provides cover from predators and harsh abiotic conditions. Plant species composition affects the types of seeds and herbaceous material available to granivores and herbivores, and influences arthropod populations, which are important prey for the omnivorous species that dominate in shortgrass steppe. Both vegetation structure and plant community composition are sensitive to the availability of precipitation as well as the activity of large mammalian herbivores. In 1999, we began measuring vegetation structure and plant community composition on the three grassland and three shrubland trapping webs where we live-trap small mammals. Vegetation measurements are made once each year, usually in mid-July. Percent canopy cover of each plant species was estimated visually in 30 0.10-m2 Daubenmire quadrats on each web. To estimate habitat structure, we measured the height of grass, forb and shrub plants adjacent to each quadrat, the density of half-shrubs, small mammal mounds and burrows, harvester ant mounds and the dimension
SGS-LTER Long-Term Monitoring Project: Vegetation Structure on Small Mammal Trapping Webs on the Central Plains Experimental Range, Nunn, Colorado, USA 1999 -2006, ARS Study Number 118
This data package was produced by researchers working on the Shortgrass Steppe Long Term Ecological Research (SGS-LTER) Project, administered at Colorado State University. Long-term datasets and background information (proposals, reports, photographs, etc.) on the SGS-LTER project are contained in a comprehensive project collection within the Digital Collections of Colorado (http://digitool.library.colostate.edu/R/?func=collections&collection_id=3429). The data table and associated metadata document, which is generated in Ecological Metadata Language, may be available through other repositories serving the ecological research community and represent components of the larger SGS-LTER project collection. Additional information and referenced materials can be found: http://hdl.handle.net/10217/83458. The abundance and diversity of small mammals in shortgrass steppe is strongly influenced by the structure and composition of vegetation. Vegetation structure provides cover from predators and harsh abiotic conditions. Plant species composition affects the types of seeds and herbaceous material available to granivores and herbivores, and influences arthropod populations, which are important prey for the omnivorous species that dominate in shortgrass steppe. Both vegetation structure and plant community composition are sensitive to the availability of precipitation as well as the activity of large mammalian herbivores. In 1999, we began measuring vegetation structure and plant community composition on the three grassland and three shrubland trapping webs where we live-trap small mammals. Vegetation measurements are made once each year, usually in mid-July. Percent canopy cover of each plant species was estimated visually in 30 0.10-m2 Daubenmire quadrats on each web. To estimate habitat structure, we measured the height of grass, forb and shrub plants adjacent to each quadrat, the density of half-shrubs, small mammal mounds and burrows, harvester ant mounds and the dimension
Microhabitat at small mammal trapping stations on Hog Island, VA in 1991
Measurements of the habitat (within 2 meters) of trapping stations on Hog Island were made in the spring of 1991. These measurements included the percent cover, height and dominant vegetation at each site. Note: this is a very dynamic island, so significant changes in habitat occurred within a few years of collection of this data.
Multituberculate mammals from the Middle Jurassic of Western Siberia, Russia, and the origin of Multituberculata
Tashtykia primaeva gen. et sp. nov. and Tagaria antiqua gen. et sp. nov. (Multituberculata incertae sedis) are described based on isolated teeth from the Middle Jurassic (Bathonian) Itat Formation from the Berezovsk coal mine in Krasnoyarsk Territory, Western Siberia, Russia. Tashtykia primaeva gen. et sp. nov. is characterized by a P5 with three rows of cusps (cusp formula 2B:4M:6L) and a high sectorial p4 with two triangular lobes, five serrations associated with labial and lingual ridges, and a unique distal cusp. Tagaria antiqua gen. et sp. nov. differs from all other multituberculates by a very long P5 with flat crown and many cusps arranged in three rows (4B:6M:7L). Morphologically the teeth of Kermackodon and Megaconus are transitional between Euharamiyida and Middle Jurassic Multituberculata. Kermackodon shares several characteristics with Euharamiyida, such as pointed cusps on the molars connected by longitudinal ridges, a distolabial cusp on the M2 that is higher than the other cusps, and a single large sectorial premolar (p4) with a distal basin. The euharamiyidan characters of Megaconus are an ultimate upper premolar with a shorter lingual side, a p4 with a distal basin, and one cusp on the molars being larger than the other cusps. In addition, Megaconus shares an ultimate upper premolar with three rows of cusps, horizontal wear on the molars, and pyramidal cusps on the molars separated by transverse grooves with multituberculates. The multituberculate characters of Kermackodon include horizontal rather than basined wear on the surface of the molars and serrations on the p4.
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