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Supplementary material 2 from: Amézquita A, Mazariegos-H LA, Cañaveral S, Orejuela C, Barragán-Contreras LA, Daza JM (2023) Species richness under a vertebral stripe: integrative taxonomy uncovers three additional species of Pholidobolus lizards (Sauria, Squamata, Gymnophthalmidae) from the north-western Colombian Andes. ZooKeys 1141: 119-148. https://doi.org/10.3897/zookeys.1141.94774
Detailed phylogenetic tree
Supplementary material 3 from: Hedin M, Milne MA (2023) New species in old mountains: integrative taxonomy reveals ten new species and extensive short-range endemism in Nesticus spiders (Araneae, Nesticidae) from the southern Appalachian Mountains. ZooKeys 1145: 1-130. https://doi.org/10.3897/zookeys.1145.96724
Specimens used in molecular work
Supplementary material 2 from: Hedin M, Milne MA (2023) New species in old mountains: integrative taxonomy reveals ten new species and extensive short-range endemism in Nesticus spiders (Araneae, Nesticidae) from the southern Appalachian Mountains. ZooKeys 1145: 1-130. https://doi.org/10.3897/zookeys.1145.96724
Nesticus immature specimen records
Supplementary material 4 from: Hedin M, Milne MA (2023) New species in old mountains: integrative taxonomy reveals ten new species and extensive short-range endemism in Nesticus spiders (Araneae, Nesticidae) from the southern Appalachian Mountains. ZooKeys 1145: 1-130. https://doi.org/10.3897/zookeys.1145.96724
Input alignments, analysis log files, and output tree files
Supplementary material 1 from: Hedin M, Milne MA (2023) New species in old mountains: integrative taxonomy reveals ten new species and extensive short-range endemism in Nesticus spiders (Araneae, Nesticidae) from the southern Appalachian Mountains. ZooKeys 1145: 1-130. https://doi.org/10.3897/zookeys.1145.96724
Nesticus morphological material examined
Figure 16 in A Study in Scarlet: Integrative Taxonomy of the Spider Genus Loureedia (Araneae: Eresidae)
Figure 16. Result of the species delimitation analysis performed by ASAP. (A) 15 taxa grouping, with ASAP score 6.5; (B) 13 taxa grouping, with ASAP score 4.0; (C) 10 taxa grouping, with ASAP score 2.5; (D) 9 taxa grouping, with ASAP score 4.5; (E) 7 taxa grouping (Loureedia would have only two species) grouping, with ASAP score 6.5. Different colors correspond to recognized species.
Figure 10 in A Study in Scarlet: Integrative Taxonomy of the Spider Genus Loureedia (Araneae: Eresidae)
Figure 10. Retreats of Loureedia colleni from Spain. (A,B) retreat layout, dorsal and lateral views (illustration: Thomas Romanoff); (C) female with the open hatch; (D) hatch being closed; (E) closed hatch. Legend (A,B): 1—main lodge; 2—external access tunnels; 3—hunting canopy and radial silk lines; 4—"retreat" hatch; 5—annex "retreat" lodge.
FIGURE 3 in Integrative taxonomy of a new species of Rhyacodrilus (Annelida: Clitellata: Rhyacodrilinae) from Tibet Plateau rivers, with a preliminary assessment of its phylogenetic position
FIGURE 3. Za'gya Zangbo river near Tangulashan mountains.
FIGURE 8 in Integrative taxonomy reveals two new narrowly-endemic crayfish species (Decapoda: Cambaridae) from the Yadkin River Basin in western North Carolina, USA
FIGURE 8. Cambarus burchfielae, holotype (90219) in life (photo credit: Michael A. Perkins, NCWRC).
Figure 19 in Integrative taxonomy reveals hidden diversity in the Catharus fuscater (Passeriformes: Turdidae) complex in Central and South America
Figure 19. Side view of adult plumages in C. o. tenebris ssp. nov. Photograph by M.R.H.
Figure 14 in Integrative taxonomy reveals hidden diversity in the Catharus fuscater (Passeriformes: Turdidae) complex in Central and South America
Figure 14. Side view of the adult plumages in C. arcanus sp. nov.. Photograph by M.R.H.
Figure 17 in Integrative taxonomy reveals hidden diversity in the Catharus fuscater (Passeriformes: Turdidae) complex in Central and South America
Figure 17. Side view of adult plumages in C. b. nebulus ssp. nov. Photograph by M.R.H.
FIGURE 21 in Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species
FIGURE 21 Body parts of Merodon petiolatus sp. nov., male. A) head, frontal view, B) metaleg, lateral view, C) wing, dorsal view.
FIGURE 15 in Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species
FIGURE 15 Metaleg of Merodon hamifer. A) male, lateral view, B) female, lateral view, C) protarsus of male, dorsal view, D) protarsus of male, ventral view. Basoventral bulge marked with arrow.
FIGURE 6 in Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species
FIGURE 6 Male genitalia of Merodon aberrans. A) epandrium, lateral view, B) epandrium, ventral view, C) hypandrium, lateral view. Abbreviations: al, anterior surstyle lobe; c, cercus; il, interior accessory lobe of posterior surstyle lobe; l, lingula; pl, posterior surstyle lobe; s, lateral sclerite of aedeagus.
FIGURE 14 in Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species
FIGURE 14 Male genitalia of Merodon flavitibius. A) epandrium, lateral view, B) epandrium, ventral view, C) hypandrium, lateral view. Abbreviations: al, anterior surstyle lobe; il, interior accessory lobe of posterior surstyle lobe; l, lingula; pl, posterior surstyle lobe.
FIGURE 5 Merodon aberrans. A in Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species
FIGURE 5 Merodon aberrans. A) abdomen of male, dorsal view, B) abdomen of female, dorsal view, C) mesonotum of male, lateral view.
FIGURE 17 in Integrative taxonomy of the Merodon aberrans (Diptera, Syrphidae) species group: distribution patterns and description of three new species
FIGURE 17 Male genitalia of Merodon hamifer. A) epandrium, lateral view, B) epandrium, ventral view, C) hypandrium, lateral view. Abbreviations: al, anterior surstyle lobe; il, interior accessory lobe of posterior surstyle lobe; l, lingula; pl, posterior surstyle lobe.
FIGURE 8 in Diversification in ancient Lake Biwa: integrative taxonomy reveals overlooked species diversity of the Japanese freshwater snail genus Semisulcospira (Mollusca: Semisulcospiridae)
FIGURE 8 Shells of Semisulcospira niponica and S. fuscata. A–F, Lectotype (A–C), NHM 1875.11.24.11/1, paralectotypes (D, E), NHM 1875.11.24.11/2, 1875.11.24.11/3 and the label of S. niponica (F). G–K. Holotype of S. biwae, SMF 291511. L–P, Holotype of S. fuscata, LBM 13-1. Q–S, S. niponica from Oura Port, KUZ Z4091. T–W, S. niponica from Nagahama Port, KUZ Z4093. X–Z, S. niponica from Iso, KUZ Z4095. AA–AC, S. niponica from Kitakomatsu Port, KUZ Z4097. AD–AE, S. niponica from Kitakomatsu Beach, KUZ Z4098. AF –AH, S. niponica from Katata Port, KUZ Z4099. AI–AK, S. niponica from Otsu Port, KUZ Z3766. AL –AN, S. niponica from Nango, KUZ Z4101. AO–AQ, S. fuscata from Lake Yogo, KUZ Z4103. AR –AT, S. fuscata from Oura, KUZ Z4105. AU–AX, S. fuscata from Nihonmatsu, KUZ Z4107. AY–BA, Putative hybrid between S. fuscata and S. watanabei sp. nov. from Nihonmatsu, KUZ Z4140. A–E, G–I, L–N, Q, T, X, AA, AD, AF, AI, AL, AO, AR, AU, AY, Adult shell. R, U, Y, AB, AE, AG, AJ, AM, AP, AS, AW, AZ, Operculum. S, W, Z, AC, AH, AK, AN, AQ, AT, AX, BA, Embryonic shell. F, J, K, O, P, Label. Scale bars: 10 mm (A–E, G–I, L–N, Q, R, T, U, X, Y, AA, AB, AD–AG, AI, AJ, AL, AM, AO, AP, AR, AS, AU, AW, AY, AZ), 1 mm (S, W, Z, AC, AH, AK, AN, AQ, AT, AX, BA). Newly collected specimens (Q–BA) were treated with 3% sodium hypochlorite
Data from: From integrative taxonomy to species description: one step beyond
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