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Figure 1 from: Faulwetter S, Pafilis E, Fanini L, Bailly N, Agosti D, Arvanitidis C, Boicenco L, Catapano T, Claus S, Dekeyzer S, Georgiev T, Legaki A, Mavraki D, Oulas A, Papastefanou G, Penev L, Sautter G, Schigel D, Senderov V, Teaca A, Tsompanou M (2016) EMODnet Workshop on mechanisms and guidelines to mobilise historical data into biogeographic databases. Research Ideas and Outcomes 2: e10445. https://doi.org/10.3897/rio.2.e10445
Figure 1 - Workflow depicting the process of manually extracting data from legacy literature workflow, as currently performed in in EMODnet WP4. Abbreviations: OCR = Optical Character Recognition; OBIS = Ocean Biogeographic Information System; DwC = Darwin Core; IPT = Integrated Publishing Toolkit; medOBIS = Mediterranean Ocean Biogeographic Information System, GBIF = Global Biodiversity Information Facility
Figure 3 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Figure 3 - Analysis of the MIxS-BE "building occupancy type" (type of building where the underlying sample was taken).
Figure 2 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Figure 2 - Krona chart of the taxonomic affiliation of the BMS sequences down to order level. The Krona chart lists all annotated BMS sequences except those classified as Fungi sp. (36.4%) and those of non-fungal origin (0.9%). An interactive version of the Krona chart is provided as Suppl. material 3. The figure includes pre-existing data plus the data added during the workshop, such that these charts indicate the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2016. Sequences that were not annotated with a single built environment-related term in the INSDC were not included in this effort, and are not represented in these charts.
Figure 1 from: Abarenkov K, Adams RI, Irinyi L, Agan A, Ambrosio E, Antonelli A, Bahram M, Bengtsson-Palme J, Bok G, Cangren P, Coimbra V, Coleine C, Gustafsson C, He J, Hofmann T, Kristiansson E, Larsson E, Larsson T, Liu Y, Martinsson S, Meyer W, Panova M, Pombubpa N, Ritter C, Ryberg M, Svantesson S, Scharn R, Svensson O, Töpel M, Unterseher M, Visagie C, Wurzbacher C, Taylor AFS, Kõljalg U, Schriml L, Nilsson RH (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. https://doi.org/10.3897/mycokeys.16.10000
Figure 1 - Analysis of the BMS sequences for country of collection. Country centroids marked with bubbles of different size on the global map indicate the number of BMS sequences originating from these countries (54 distinct countries, sequence count ranging from 1 to 2,914). For an additional 2.9% of the sequences, country information could not be restored during the workshop. The figure includes pre-existing data plus the data added during the workshop, such that these charts indicate the scientific state of ITS-based Sanger-derived sequencing of the built mycobiome as of spring 2016. Sequences that were not annotated with a single built environment-related term in the INSDC were not included in this effort, and are not represented in these charts.
Figure 1d from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774
Figure 1d - Two examples of IRES during contrasting hydrological phases. <br> The Calavon River in Mediterranean during dry phase
Figure 1a from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774
Figure 1a - Two examples of IRES during contrasting hydrological phases. <br> The Clauge River in the temperate Jura, France, during dry phase
Figure 1b from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774
Figure 1b - Two examples of IRES during contrasting hydrological phases. <br> The Clauge River in the temperate Jura, France, during flowing phase
Figure 1e from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774
Figure 1e - Two examples of IRES during contrasting hydrological phases. <br> The Calavon River in Mediterranean during dry phase
Figure 1c from: Datry T, Singer G, Sauquet E, Jorda-Capdevilla D, Von Schiller D, Subbington R, Magand C, Pařil P, Miliša M, Acuña V, Alves M, Augeard B, Brunke M, Cid N, Csabai Z, England J, Froebrich J, Koundouri P, Lamouroux N, Martí E, Morais M, Munné A, Mutz M, Pesic V, Previšić A, Reynaud A, Robinson C, Sadler J, Skoulikidis N, Terrier B, Tockner K, Vesely D, Zoppini A (2017) Science and Management of Intermittent Rivers and Ephemeral Streams (SMIRES). Research Ideas and Outcomes 3: e21774. https://doi.org/10.3897/rio.3.e21774
Figure 1c - Two examples of IRES during contrasting hydrological phases. <br> The Calavon River in Mediterranean during flowing phase
Tabular datasets for for Morrone Parfitt, G., Coccia, E., Goldman, C. et al. Disruption of lysosomal proteolysis in astrocytes facilitates midbrain organoid proteostasis failure in an early-onset Parkinson's disease model. Nat Commun 15, 447 (2024). https://doi.org/10.1038/s41467-024-44732-2
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Рис. 1. Рисуночный кΛюч ΑΛя опреΑеΛения виΑов роΑа Hofmaenneria Gerlach, Meyl, 1957: A, F, J, M, O, Q, T, U — гоΛова самца; C, G, K — гоΛова самки; B, I, N, P, R, V — заΑний конец самца; D, H, L — заΑний конец самки; E — теΛо самца цеΛиком; S — теΛо самки цеΛиком Fig. 1. Picture key for identifying species of the genus Hofmaenneria Gerlach, Meyl, 1957: A, F, J, M, O, Q, T, U — head of male; C, G, K — head of female; B, I, N, P, R, V — posterior body end of male; D, H, L — posterior body end of female; E — male, entire body; S — female, entire body in Review of the genus Hofmaenneria Gerlach, Meyl 1957 (Nematoda, Monhysterida)
Рис. 1. Рисуночный кΛюч ΑΛя опреΑеΛения виΑов роΑа Hofmaenneria Gerlach, Meyl, 1957: A, F, J, M, O, Q, T, U — гоΛова самца; C, G, K — гоΛова самки; B, I, N, P, R, V — заΑний конец самца; D, H, L — заΑний конец самки; E — теΛо самца цеΛиком; S — теΛо самки цеΛиком Fig. 1. Picture key for identifying species of the genus Hofmaenneria Gerlach, Meyl, 1957: A, F, J, M, O, Q, T, U — head of male; C, G, K — head of female; B, I, N, P, R, V — posterior body end of male; D, H, L — posterior body end of female; E — male, entire body; S — female, entire body
Fig. 1 in The First Records Of The Common Pheasant, P H A S I A N U S C O L C H I C U S (Av E S: G A L L I F O R M E S: Phasianidae), And Its Group In South-Eastern Latvia
Fig. 1. Original (black) and current (red) distribution of the Common Pheasant (Phasianus colchicus). Stripes: No detailed data about distribution (Wikimedia Commons).
Рис. 2. Фотографии Metadesmolaimus longicaudatus sp. nov., гоΛотип самца (a, c, d, g, h) и паратип самки (b, e, f, j). a, b — общий виΔ; c — переΔний конец теΛа; d, e — гоΛова; f — теΛо в обΛасти вуΛьвы; g — теΛо в обΛасти кΛоаки; h, j — заΔний конец теΛа. Масштаб: a, b — 100 мкм; c — 50 мкм; f, h, j — 20 мкм; d, e, g — 10 мкм Fig. 2. Light micrograph of Metadesmolaimus longicaudatus sp. nov., male holotype (a, c, d, g, h) and female paratype (b, e, f, j), a, b — general view; c — anterior body end; d, e — head; f — vulvar region; g — cloaca region; h, j — posterior body end;. Scale bars: a, b — 100 μm; c — 50 μm; h, j — 20 μm; d, e, g — 10 μm in Two New Species Of The Family Xyalidae Chitwood, 1951 (Nematoda, Monhysterida) From The Water Bodies Of Vietnam
Рис. 2. Фотографии Metadesmolaimus longicaudatus sp. nov., гоΛотип самца (a, c, d, g, h) и паратип самки (b, e, f, j). a, b — общий виΔ; c — переΔний конец теΛа; d, e — гоΛова; f — теΛо в обΛасти вуΛьвы; g — теΛо в обΛасти кΛоаки; h, j — заΔний конец теΛа. Масштаб: a, b — 100 мкм; c — 50 мкм; f, h, j — 20 мкм; d, e, g — 10 мкм Fig. 2. Light micrograph of Metadesmolaimus longicaudatus sp. nov., male holotype (a, c, d, g, h) and female paratype (b, e, f, j), a, b — general view; c — anterior body end; d, e — head; f — vulvar region; g — cloaca region; h, j — posterior body end;. Scale bars: a, b — 100 μm; c — 50 μm; h, j — 20 μm; d, e, g — 10 μm
◂Fig. 1 Live photos and dissection of parasitized Aphrodita longipalpa and Veneriserva pygoclava. A Ventral view of A. longipalpa. B Dorsal view of A. longipalpa with removed feltage chaetae, revealing the parasite visible through the body wall. C Ventrally dissected A. longipalpa, exposing the sizable female parasite. Veneriserva pygoclava individuals within the host are indicated by arrowheads. D Juvenile female V. pygoclava, with developing oocytes visible through the body wall along the mid-dorsal orange line. E Female V. pygoclava showing the mid-dorsal orange pigmentation and the white mark at the base of the prostomium. F Male V. pygoclava. G A large female and smaller male V. pygoclava, extracted from the same host. The pygidium is club-shaped in both males and females and juveniles. H Juvenile V. pygoclava shown from multiple angles, characterized by a complete white coloration; black jaws are magnified in panel in Hardly Venus's servant-morphological adaptations of Veneriserva to an endoparasitic lifestyle and its phylogenetic position within Dorvilleidae (Annelida)
◂Fig. 1 Live photos and dissection of parasitized Aphrodita longipalpa and Veneriserva pygoclava. A Ventral view of A. longipalpa. B Dorsal view of A. longipalpa with removed feltage chaetae, revealing the parasite visible through the body wall. C Ventrally dissected A. longipalpa, exposing the sizable female parasite. Veneriserva pygoclava individuals within the host are indicated by arrowheads. D Juvenile female V. pygoclava, with developing oocytes visible through the body wall along the mid-dorsal orange line. E Female V. pygoclava showing the mid-dorsal orange pigmentation and the white mark at the base of the prostomium. F Male V. pygoclava. G A large female and smaller male V. pygoclava, extracted from the same host. The pygidium is club-shaped in both males and females and juveniles. H Juvenile V. pygoclava shown from multiple angles, characterized by a complete white coloration; black jaws are magnified in panel
◂Fig. 5 Cells of phylogenetically related strains (light microscopy). a Thecate cell in dorsal view. b Thecate cell in ventral view, note the sulcus extending onto the epitheca (arrow). c Putatively necrotic, thecate cell. d Thecate cell with one bulge on the epitheca (arrow), note that this was the only such cell among thousands of inspected cells. e, f Coccoid cells, apparently without thecae. g Two thecate cells enclosed in the parental theca. h Two connected, immotile cells enclosed in the parental thecae. j Lid of epitheca in dorsal-apical view (mirrored), composed of plates 2′‒4′, all intercalary plates and plates 2′′‒6′′. l‒m Same opened theca in ventral view (l) and dorsal view (m), note the sulcus extending onto the epitheca (arrow), the dorsal opening and all apical and all intercalary plates and plates 3′′‒5′′ remaining with the hypotheca. n Chloroplasts (as inferred from autofluorescence), note the space occupied by the nucleus. Plate labelling follows the Kofoidean notation, n′: apical plate; n′′: precingular plate; n′′′: postcingular plate; na: anterior intercalary plate. Scale= 10 µm in Bumps on the back: An unusual morphology in phylogenetically distinct Peridinium aff. cinctum (= Peridinium tuberosum; Peridiniales, Dinophyceae)
◂Fig. 5 Cells of phylogenetically related strains (light microscopy). a Thecate cell in dorsal view. b Thecate cell in ventral view, note the sulcus extending onto the epitheca (arrow). c Putatively necrotic, thecate cell. d Thecate cell with one bulge on the epitheca (arrow), note that this was the only such cell among thousands of inspected cells. e, f Coccoid cells, apparently without thecae. g Two thecate cells enclosed in the parental theca. h Two connected, immotile cells enclosed in the parental thecae. j Lid of epitheca in dorsal-apical view (mirrored), composed of plates 2′‒4′, all intercalary plates and plates 2′′‒6′′. l‒m Same opened theca in ventral view (l) and dorsal view (m), note the sulcus extending onto the epitheca (arrow), the dorsal opening and all apical and all intercalary plates and plates 3′′‒5′′ remaining with the hypotheca. n Chloroplasts (as inferred from autofluorescence), note the space occupied by the nucleus. Plate labelling follows the Kofoidean notation, n′: apical plate; n′′: precingular plate; n′′′: postcingular plate; na: anterior intercalary plate. Scale= 10 µm
◂Fig. 3 Historically described phenotypical variations and yet undiscovered deviations in the plate pattern of P. volzii. b–c, f, i, l–m Light microscopy, a, d–e, g–h, k scanning electron microscopy. a–f Newly identified deviations a–b plate 4′′ pentagonal in strains a GeoM*793; b GeoM*788; c plate 2a split (strain GeoK*024); d plates 2′′ and 3′′ fused (strain GeoM*866); e plates 1′′′ and 1′′′′ fused (strain GeoM*788); f plates 1a and 3′ fused (strain GeoM*788). g–m Historic infraspecific taxa; g P. guestrowiense forma lineatum (strain GeoM*866); h P. guestrowiense forma compressum (strain GeoM*866); i P. guestrowiense subvar. originale (strain GeoK*024); k P. volzii var. cinctiforme (strain GeoM*793); l P. volzii var. simplex (strain GeoM*789); m P. volzii forma complexum (strain GeoM*793). Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, split or fused plates are indicated by asterisks. Scale bar= 10 µm. U A= 15 kV in Morphological and molecular variability of Peridinium volzii Lemmerm. (Peridiniaceae, Dinophyceae) and its relevance for infraspecific taxonomy
◂Fig. 3 Historically described phenotypical variations and yet undiscovered deviations in the plate pattern of P. volzii. b–c, f, i, l–m Light microscopy, a, d–e, g–h, k scanning electron microscopy. a–f Newly identified deviations a–b plate 4′′ pentagonal in strains a GeoM*793; b GeoM*788; c plate 2a split (strain GeoK*024); d plates 2′′ and 3′′ fused (strain GeoM*866); e plates 1′′′ and 1′′′′ fused (strain GeoM*788); f plates 1a and 3′ fused (strain GeoM*788). g–m Historic infraspecific taxa; g P. guestrowiense forma lineatum (strain GeoM*866); h P. guestrowiense forma compressum (strain GeoM*866); i P. guestrowiense subvar. originale (strain GeoK*024); k P. volzii var. cinctiforme (strain GeoM*793); l P. volzii var. simplex (strain GeoM*789); m P. volzii forma complexum (strain GeoM*793). Abbreviations: n′: apical plate, n′′: precingular plate, n′′′: postcingular plate, n′′′′: antapical plate, na: anterior intercalary plate, nC: cingular plate, split or fused plates are indicated by asterisks. Scale bar= 10 µm. U A= 15 kV
Fig. 26. Anuretes quadrilaterus Shiino, male. A. habitus, dorsal. B. urosome, dorsal. C. antennule. D. antenna. E. maxillule. F. maxilliped. G. legs 5 and 6 in Sea lice (Copepoda, Siphonostomatoida, Caligidae) new to Korea, including three new species
Fig. 26. Anuretes quadrilaterus Shiino, male. A. habitus, dorsal. B. urosome, dorsal. C. antennule. D. antenna. E. maxillule. F. maxilliped. G. legs 5 and 6. Scales=A. 0.5 mm. B. 0.2 mm. C-G. 0.1 mm.
Figure 9 from: Kirichenko N, Triberti P, Kobayashi S, Hirowatari T, Doorenweerd C, Ohshima I, Huang G, Wang M, Magnoux E, Lopez-Vaamonde C (2018) Systematics of Phyllocnistis leaf-mining moths (Lepidoptera: Gracillariidae) developing on dogwood (Cornus spp.) in Northeast Asia, with the description of three new species. ZooKeys 736: 79-118. https://doi.org/10.3897/zookeys.736.20739
Figure 9 Adults of Phyllocnistis indistincta (Japan: Honshu, Kyushu) and P. saepta (China). A–E P. indistincta A holotype male, ex Cornus controversa, Honshu, Nara Prefecture [Suppl. material 1, No. 3] B paratype female, ex C. florida, Nara Prefecture [Suppl. material 1, No. 92] C paratype male, ex C. controversa, Nagano Prefecture [Suppl. material 1, No. 38] D ex C. kousa, Kyushu, Fukuoka Prefecture [Suppl. material 1, No. 133] E paratype female, Nara Prefecture [Suppl. material 1, No. 127] F P. saepta, holotype male, ex C. macrophylla, Yunnan Province [Suppl. material 1, No. 160].
Figure 7 from: Kirichenko N, Triberti P, Kobayashi S, Hirowatari T, Doorenweerd C, Ohshima I, Huang G, Wang M, Magnoux E, Lopez-Vaamonde C (2018) Systematics of Phyllocnistis leaf-mining moths (Lepidoptera: Gracillariidae) developing on dogwood (Cornus spp.) in Northeast Asia, with the description of three new species. ZooKeys 736: 79-118. https://doi.org/10.3897/zookeys.736.20739
Figure 7 Biology of Phyllocnistis verae on Cornus alba in Russia (type locality: Krasnoyarsk, village Borovoe, left bank of Yenisei River, 144 m). A habitat B branch with mined leaves on the lower side C mine with feeding larva D fragment of mine with young larva (transmitted light) E same, incident light F line of frass and feeding larva (transmitted light) G opened mine H sap-feeding larvae, dorsal view I, J pupation near leaf margin K, L pupa. Arrows show mines (B, C), larva (D, E, F, G), frass (G, F), pupation site (I–K). Scale bars: 3 mm (D, E), 5 mm (F, G), 1 mm (H, L), 2 mm (J, K).
Figure 6 from: Kirichenko N, Triberti P, Kobayashi S, Hirowatari T, Doorenweerd C, Ohshima I, Huang G, Wang M, Magnoux E, Lopez-Vaamonde C (2018) Systematics of Phyllocnistis leaf-mining moths (Lepidoptera: Gracillariidae) developing on dogwood (Cornus spp.) in Northeast Asia, with the description of three new species. ZooKeys 736: 79-118. https://doi.org/10.3897/zookeys.736.20739
Figure 6 Biology of Phyllocnistis indistincta on Cornus florida in Japan (Honshu, Nara Prefecture, Soni, Imai, Oku-Kochi Sanso, 455 m). A habitat B serpentine mines on upper side of leaves C flowers and bracts, an arrow shows mine D serpentine mines on upper side of bracts E same, mines and cocoon folds F cocoon fold. Arrows show mines (C, D) and pupation site (D, E). Scale bar: 2 mm (F).
ScienceDex guides
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.