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FIGURE 1 in Molecular phylogenetic and historical biogeographical relationships of Laudakia (Squamata: Agamidae) and intraspecific differentiation of L. stoliczkana inferred from mitochondrial DNA sequences

FIGURE 1. Bayesian phylogenetic trees of Laudakia on the sequenced of 16S. (note: the values of nodes near is BPP/BS).

FIG. 8 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 8. Comparison of the branching patterns of molecular and combined-data trees produced with different methods. Each family recognized by Tyler et al. (2003) is a different color. Black lines indicate relationships with strong support; gray lines indicate weaker support. (A) Results from maximum likelihood analysis of molecular data. (B) Results from Bayesian inference analysis of molecular data. (C) Results from maximum likelihood analysis of combined morphological and molecular data, including three genera with morphological data only. (D) Results from Bayesian inference analysis of combined morphological and molecular data, including three genera with morphological data only.

FIG. 7 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 7. Combined (total-evidence) molecular and morphological phylogeny of the Zeiformes based on Bayesian inference (BI) using MrBayes v.3.1.2 (Huelsenbeck and Ronquist, 2001; Ronquist and Huelsenbeck, 2003). See Figure 6 for details of outgroup relationships, and see text for detailed methods and assumptions. The combined maximum likelihood (ML) analysis using Garli v2.0 (Zwickl, 2006) produced almost identical topology and very similar relative branch lengths. Taxa with asterisks (*) are of questionable or revised identification. Taxa with two asterisks (**) are those with morphological data only. Support values at nodes are from both analyses, with BI posterior probabilities above ML bootstrap percentages. Numbers after scientific names correspond to code numbers in Table 1. Thumbnail drawings of representative species by Michael Hanson.

FIG. 1 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 1. World map showing the collecting localities for specimens from which tissues were obtained for this study, along with the type locality for each species in the order. Specimen and type localities are most numerous in the western and southwestern Pacific, in the waters surrounding southern Africa, and on either side of the North Atlantic.

FIG. 4 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 4. Maximum parsimony (MP) phylogeny of Zeiformes based on morphological data analyzed in PAUP v.4b10 (Swofford, 2003). The data (Table 3) are a modified version of those used by Tyler and Santini (2005) but with revised outgroups reflecting zeiform membership in the Paracanthopterygii (e.g., Grande et al., 2013), and with character deletions, additions, and edits described in the text. The characters are listed in Appendix 1. This analysis is based on 27 terminal taxa and 105 characters, and resulted in a single shortest tree of 319 steps with CI 0.567. Support values at nodes are 1000-replicate bootstrap percentages/decay (Bremer) values. Character-state optimization was in MacClade 4.08 (Maddison and Maddison, 2005) using the ACCTRAN option as used also by Tyler et al. (2003) and Tyler and Santini (2005). Thumbnail drawings of representative species are original artwork by Michael Hanson.

FIG. 5 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 5. Comparison of branching patterns of morphological trees under maximum parsimony (MP) from three studies. Each family recognized by Tyler et al. (2003) is a different color. (A) Results from Tyler et al. (2003). (B) Results from Tyler and Santini (2005). (C) Results from the morphological analysis of the present study. Black lines in C indicate relationships with strong support; gray lines indicate weaker support. Note that the new tree resembles the previous trees but with the root moved to a position near Zeidae.

FIG. 2 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 2. Maximum likelihood (ML) phylogeny of the Zeiformes as reconstructed by Garli v2.0 (Zwickl, 2006), using sequence data for the eight molecular loci of Table 1, under the substitution models given in Table 2. Support values at nodes are bootstrap percentages. For details of the outgroup relationships see Figure 1S (see Data Accessibility). Asterisk (*) indicates sample originally cataloged as Cyttomimus affinis. Numbers after scientific names correspond to code numbers in Table 1.

FIG. 3 in Phylogenetic Relationships among Fishes in the Order Zeiformes Based on Molecular and Morphological Data

FIG. 3. Bayesian inference (BI) phylogeny of the Zeiformes as reconstructed by MrBayes v.3.1.2 (Huelsenbeck and Ronquist, 2001; Ronquist and Huelsenbeck, 2003), using sequence data for the eight molecular loci of Table 1, under the substitution models given in Table 2. Support values at nodes are posterior probabilities. For details of the outgroup relationships see Figure 2S (see Data Accessibility). Asterisk (*) indicates sample originally cataloged as Cyttomimus affinis. Numbers after scientific names correspond to code numbers in Table 1.

opennotspecifiedAug 2018View details →

Fig. 1 in Morphological specificities of vendace (Salmoniformes: Salmonidae: Coregoninae: Coregonus albula) population in Lake Pleshcheyevo (the Volga River basin): relationships of two phylogenetic lineages in a new zone of secondary contact

Fig. 1 Map of European north of Russia marking the selected sampling location. 1, 2—Lake Goreloye [16] and Lake Bol'shoye Krasnoye [35] (Bol'shoy Solovetsky Island); 3—Lake Beloye [16]; 4—Lake Pleshcheyevo: lineages E [44] and ALBP2 [29]; 5—Lake Vishtynetskoye (Kaliningrad region) [28]. In square brackets, the sample size is shown

opennotspecifiedAug 2018View details →

Fig. 3 in Morphological specificities of vendace (Salmoniformes: Salmonidae: Coregoninae: Coregonus albula) population in Lake Pleshcheyevo (the Volga River basin): relationships of two phylogenetic lineages in a new zone of secondary contact

Fig. 3 Plots of scores for the first two discriminant functions for size-free morphometric data for six vendace (C. albula) groups. 1—Lake Pleshcheyevo, lineage E; 2—Lake Pleshcheyevo, lineage ALBP2; 3—Lake Goreloye; 4—Lake Bol'shoye Krasnoye; 5—Lake Vishtynetskoye; 6—Lake Beloye. 95% confidence ellipses are shown

opennotspecifiedAug 2018View details →

Fig. 2 Phylogenetic relationships among 30 in Time-calibrated molecular phylogeny reveals a Miocene-Pliocene diversification in the Amazon miniature killifish genus Fluviphylax (Cyprinodontiformes: Cyprinodontoidei)

Fig. 2 Phylogenetic relationships among 30 species of Cyprinodontoidei, including all nominal species of Fluviphylax and three undescribed species, inferred by using partial sequences of the nuclear-encoded genes GLYT1, ENC1, RAG1, MYH6, and SREB2 and the mitochondrial gene COI, total of 5880 bp. Numbers left to the bar indicate posterior

Fig. 4 in Phylogenetic relationships within the flatworm genus Matuxia (Platyhelminthes, Tricladida, Continenticola) inferred from molecular data with the description of a southern lineage of the genus

Fig. 4 Matuxia tymbyra Rossi & Leal-Zanchet, sp. nov., holotype, microphotographs of transverse (a–e, g) and sagittal (f; anterior tip to the left) sections: a anterior region of body; b detail of anterior region of body; c pre-pharyngeal region; d detail of dorsal surface of pre-pharyngeal region; e detail of ventral surface of pre- pharyngeal region; f pharynx; g ovary

Fig. 5 in Phylogenetic relationships within the flatworm genus Matuxia (Platyhelminthes, Tricladida, Continenticola) inferred from molecular data with the description of a southern lineage of the genus

Fig. 5 Matuxia tymbyra Rossi & Leal-Zanchet, sp. nov.: a sagittal composite reconstruction of copulatory apparatus of the holotype; b horizontal composite reconstruction of copulatory apparatus of specimen MZU PL.00166

Fig. 2 in Phylogenetic relationships within the flatworm genus Matuxia (Platyhelminthes, Tricladida, Continenticola) inferred from molecular data with the description of a southern lineage of the genus

Fig. 2 Molecular phylogenetic relationships and species boundaries inferred from the sequences of COI and EF-1a on a Bayesian consensus tree. Node values represent posterior probabilities and likelihood

Fig. 1 in Phylogenetic relationships within the flatworm genus Matuxia (Platyhelminthes, Tricladida, Continenticola) inferred from molecular data with the description of a southern lineage of the genus

Fig. 1 Distributional range of the genus Matuxia in areas of Atlantic Forest from southeastern and southern Brazil

Fig. 3 in Phylogenetic relationships within the flatworm genus Matuxia (Platyhelminthes, Tricladida, Continenticola) inferred from molecular data with the description of a southern lineage of the genus

Fig. 3 Matuxia tymbyra Rossi & Leal-Zanchet, sp. nov.: a–b photograph of live specimens, a MZU PL.00181 and b holotype, in dorsal view; c colour pattern of the holotype after fixation in dorsal view; d eye pattern of a fixed specimen (MZU PL.00183) in dorsal view. Anterior tip to the left. The position of the pharynx and copulatory apparatus is indicated by the light marks on dorsal surface in c

opennotspecifiedMar 2015View details →

FIGURE 3 in Phylogenetic relationships of Ibervillea and Tumamoca (Coniandreae, Cucurbitaceae), two genera of the dry lands of North America

FIGURE 3. Total evidence (molecular + morphological) parsimony strict consensus tree. Bayesian topology of the 50% consensus tree after burn-in was congruent and posterior probabilities are indicated above the branches. Numbers below the branches indicate Jackknife support.

opennotspecifiedFeb 2015View details →

FIGURE 3 in Phylogenetic relationships among the Iranian Triticum diploid gene pool as inferred from the loci Acc1 and Pgk1

FIGURE 3. Comparison of partial sequences of Pgk1 gene from the Iranian wild diploid Triticum (haplotypes 1−3) and related species. Indels 1 and 2 occurred at positions 54−59 and 475−476, respectively. Indel 3 was found at positions 509−517. Indel 4 was occurred at positions 558−565. The positions of 29 nucleotide substitutions are indicated.

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FIGURE 2 in Phylogenetic relationships of Ibervillea and Tumamoca (Coniandreae, Cucurbitaceae), two genera of the dry lands of North America

FIGURE 2. Molecular parsimony strict consensus tree. Bayesian topology of the 50% consensus tree after burn-in was congruent and posterior probabilities are indicated above the branches. Numbers below the branches indicate Jackknife support.