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13,397 results for “sp. nov.”
Figure 5 in Description of Orthadenella coulsoni sp. nov. (Acari: Mesostigmata: Melicharidae) from Siberia with a key to the females of Orthadenella
Figure 5. Orthadenella coulsoni sp. nov., male: ventral view of idiosoma.
Map 1 in Discovered online: Hibiscus hareyae sp. nov. of sect. Lilibiscus (Malvaceae), threatened in coastal thicket at Lindi, Tanzania
Map 1. Hibiscus hareyae. Global distribution map.
Fig. 1 in Discovered online: Hibiscus hareyae sp. nov. of sect. Lilibiscus (Malvaceae), threatened in coastal thicket at Lindi, Tanzania
Fig. 1. Hibiscus hareyae. Image of the holotype (K00240493), Kirk s.n. Tanzania, Lindi, July 1877.
Data from: Gastrodia putaoensis sp. nov. (Orchidaceae, Epidendroideae) from North Myanmar
Gastrodia putaoensis, a new species from montane region in northern Myanmar, is described and illustrated. Gastrodia putaoensis is similar to Gastrodia dyeriana, but differs from it by lip narrowly triangular and subdivided into two parts, apical part near tip densely covered with yellow hairs, apex obtuse and densely covered with red papillae.
FIGURE 16. Ogdoecosta obliterata. A, B, C, D in Revision of Ogdoecosta Spaeth 1909 with description of Ogdoecosta paraflavomaculata López-Pérez, sp. nov. (Coleoptera: Chrysomelidae: Cassidinae: Mesomphaliini)
FIGURE 16. Ogdoecosta obliterata. A, B, C, D different patterns of coloration.
FIGURE 2 in The first described male Tube-web Spider for mainland Australia: Ariadna kiwirrkurra sp. nov. (Araneae: Segestriidae)
FIGURE 2. Life image of Ariadna kiwirrkurra, Baehr & Whyte sp. nov. (photo: Robert Whyte).
Dataset S1: Oxfordiana motturii gen. et sp. nov. supplemental information (XMT data for BU 5265.1)
<p><strong>Dataset S1.</strong> XMT 8-bit BMP tomographic dataset of BU5265.1. The dataset consists of 754 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic have been cropped to include only the specimen. [ZIP/BMP format 249 MB]</p>
Dataset S4: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for BU 5265.2)
<p><strong>Dataset S4.</strong> SRXMT 8-bit BMP tomographic dataset of BU5265.2. The dataset consists of 1200 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 10.6 GB]</p>
Dataset S6: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for slide BU 5266.3)
<p><strong>Dataset S6.</strong> SRXMT 8-bit BMP tomographic dataset of slide BU 5266.3. The dataset consists of 300 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 3.3 GB]</p>
Dataset S8: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for slide BU 5266.37)
<p><strong>Dataset S8.</strong> SRXMT 8-bit BMP tomographic dataset of slide BU 5266.37. The dataset consists of 400 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 3.9 GB]</p>
Dataset S3: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for BU 5265.1)
<p><strong>Dataset S3.</strong> SRXMT 8-bit BMP tomographic dataset of BU5265.1. The dataset consists of 2180 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 23.1 GB]</p>
Dataset S9: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for slide BU 5266.38)
<p><strong>Dataset S9.</strong> SRXMT 8-bit BMP tomographic dataset of slide BU 5266.38. The dataset consists of 351 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 3.4 GB]</p>
Dataset S10: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for slide BU 5266.39)
<p><strong>Dataset S10.</strong> SRXMT 8-bit BMP tomographic dataset of slide BU 5266.39. The dataset consists of 421 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 4 GB]</p>
Dataset S2: Oxfordiana motturii gen. et sp. nov. supplemental information (XMT data for BU 5265.2)
<p><strong>Dataset S2.</strong> XMT 8-bit BMP tomographic dataset of BU5265.2. The dataset consists of 724 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic have been cropped to include only the specimen. [ZIP/BMP format 635 MB]</p>
Dataset S7: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for slide BU 5266.30)
<p><strong>Dataset S7.</strong> SRXMT 8-bit BMP tomographic dataset of slide BU 5266.30. The dataset consists of 701 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 7.6 GB]</p>
Dataset S5: Oxfordiana motturii gen. et sp. nov. supplemental information (SRXMT data for BU 5265.3)
<p><strong>Dataset S5.</strong> SRXMT 8-bit BMP tomographic dataset of BU5265.3. The dataset consists of 1200 8-bit bitmap images compressed as a ZIP archive. Image brightness/contrast optimized and despeckling applied. Note that images from the tomographic stack beginning and end, without specimen data present, have not been included. [ZIP/BMP format 10.4 GB]</p>
Multiple sequence alignments: Detection and isolation of a new member of Burkholderiaceae‑related endofungal bacteria from Saksenaea boninensis sp. nov., a new thermotolerant fungus in Mucorales
<p><strong>Methods:</strong></p><p>Nucleotide sequences were aligned independently for each region using MAFFT v7.212 (Katoh and Standley, 2013). The obtained alignment blocks were subject to Gblocks 0.91b (Castresana, 2000) to remove poorly aligned positions with the relaxed selection setting described in Talavera & Castresana (2007) using the following parameters (-t = d -b2 = 9 -b3 = 10 -b4 = 5 -b5 = h). After automatically removing gaps, the alignment blocks were viewed using MEGA 6.06 software (Tamura et al., 2013) and poorly aligned positions at either end of the alignments were removed manually. Pairwise distances of the nucleotide sequences (ITS2, ITS1-5.8S-ITS2, LSU, and tef1) of the ex-type strains of seven <i>Saksenaea</i> spp. and the representative isolate <i>S. boninensis</i> Sak4 were calculated by MEGA 6.06 software (Tamura et al. 2013). Multiple sequence alignment of 16S rRNA gene of the family <i>Burkholderiaceae</i> was prepared for the phylogeny of a bacterial endosymbiont. Multiple sequence alignments of ITS, LSU, and tef1 genes of <i>Saksenaea</i> spp. (Mucorales) were separately prepared for the phylogeny of a fungal host. Concatenated dataset of these genes were also prepared. All nucleotide sequences were retrieved from GenBank (See "Sequence_ID.csv" and taxon names of each alignment). </p><p> </p><p><strong>Description of files:</strong></p><p><strong>A. Phylogeny of the family </strong><i><strong>Burkholderiaceae</strong></i><strong> (Bacterial endosymbiont):</strong></p><p>1. Burkholderiaceae_16S_RAW.fasta</p><p>Non-aligned dataset of 16S rRNA gene of the family <i>Burkholderiaceae</i>.</p><p> </p><p>2. Burkholderiaceae_16S_aligned.fasta</p><p>Aligned dataset of 16S rRNA gene of the family <i>Burkholderiaceae</i>.</p><p> </p><p><strong>B. Phylogenies of </strong><i><strong>Saksenaea</strong></i><strong> spp. (Fungal host):</strong></p><p>1. Sequence_ID_v2.csv</p><p>Taxon names, accession numbers, and sequence ID for the concatenated multiple sequence alignment are listed.</p><p> </p><p>2. Saksenaea_ITS_RAW_v2.fasta</p><p>Non-aligned dataset of ITS1-5.8S-ITS2 region of <i>Saksenaea</i> spp. </p><p> </p><p>3. Saksenaea_ITS_aligned_v2.fasta</p><p>Aligned dataset of ITS1-5.8S-ITS2 region of <i>Saksenaea</i> spp. Only used for ITS1-5.8S-ITS2 phylogeny.</p><p> </p><p>4. Saksenaea_LSU_RAW_v2.fasta</p><p>Non-aligned dataset of LSU gene region of <i>Saksenaea</i> spp. </p><p> </p><p>5. Saksenaea_LSU_aligned_v2.fasta</p><p>Aligned dataset of LSU gene region of <i>Saksenaea</i> spp. Only used for LSU phylogeny.</p><p> </p><p>6. Saksenaea_tef1_RAW_v2.fasta</p><p>Non-aligned dataset of tef1 gene region of <i>Saksenaea</i> spp. </p><p> </p><p>7. Saksenaea_tef1_aligned_v2.fasta</p><p>Aligned dataset of tef1 gene region of <i>Saksenaea</i> spp. Only used for tef1 phylogeny.</p><p> </p><p><strong><Concatenated dataset 1 (ITS2, LSU, tef1)></strong></p><p>8. Saksenaea_ITS2_for_concatenated_RAW_v2.fasta</p><p>Non-aligned dataset of ITS2 region of <i>Saksenaea</i> spp. used for preparation of a concatenated dataset 1.</p><p> </p><p>9. Saksenaea_ITS2_for_concatenated_aligned_v2.fasta</p><p>Aligned dataset of ITS2 region of <i>Saksenaea</i> spp. used for preparation of a concatenated dataset 1.</p><p> </p><p>10. Saksenaea_LSU_for_concatenated_RAW_v2.fasta</p><p>Non-aligned dataset of LSU gene region of <i>Saksenaea</i> spp. used for preparation of concatenated datasets 1 and 2.</p><p> </p><p>11. Saksenaea_LSU_for_concatenated_aligned_v2.fasta</p><p>Aligned dataset of LSU gene region of <i>Saksenaea</i> spp. used for preparation of concatenated datasets 1 and 2.</p><p> </p><p>12. Saksenaea_tef1_for_concatenated_RAW_v2.fasta</p><p>Non-aligned dataset of tef1 gene region of <i>Saksenaea</i> spp. used for preparation of concatenated datasets 1 and 2.</p><p> </p><p>13. Saksenaea_tef1_for_concatenated_aligned_v2.fasta</p><p>Aligned dataset of tef1 gene region of <i>Saksenaea</i> spp. used for preparation of concatenated datasets 1 and 2.</p><p> </p><p>14. Saksenaea_ITS2_LSU_tef1_concatenated_dataset1.fasta</p><p>Concatenated dataset of three multiple sequence alignments (9, 11, and 13). This concatenated dataset was used for the main phylogeny of <i>Saksenaea</i> spp.</p><p> </p><p><strong><Concatenated dataset 2 (ITS1-5.8S-ITS2, LSU, tef1)></strong></p><p>15. Saksenaea_ITS_for_concatenated_RAW_v2.fasta</p><p>Non-aligned dataset of ITS1-5.8S-ITS2 region of <i>Saksenaea</i> spp. used for preparation of a concatenated dataset 2.</p><p> </p><p>16. Saksenaea_ITS_for_concatenated_aligned_v2.fasta</p><p>Aligned dataset of ITS1-5.8S-ITS2 region of <i>Saksenaea</i> spp. used for preparation of a concatenated dataset 2.</p><p>Blank sequences were inserted for five isolates of <i>Saksenaea longicolla</i> after the alignment.</p><p> </p><p>17.Saksenaea_ITS_LSU_tef1_concatenated_dataset2.fasta</p><p>Concatenated dataset of three multiple sequence alignments (15, 11, and 13). This concatenated dataset was used for the main phylogeny of <i>Saksenaea</i> spp.</p><p> </p><p><strong>C. Pairwise distances of the ex-type strains of </strong><i><strong>Saksenaea</strong></i><strong> spp.</strong></p><p>1. Saksenaea_ITS_type_RAW.fasta</p><p>Non-aligned dataset of ITS1-5.8S-ITS2 region of the ex-type strains of <i>Saksenaea</i> spp.</p><p> </p><p>2. Saksenaea_ITS2_type_aligned.fasta</p><p>Aligned dataset of ITS2 region of the ex-type strains of <i>Saksenaea</i> spp.</p><p> </p><p>3.Saksenaea_ITS_type_aligned.fasta</p><p>Aligned dataset of ITS1-5.8S-ITS2 region of the ex-type strains of <i>Saksenaea</i> spp. without <i>Saksenaea longicolla</i>.</p><p> </p><p>4. Saksenaea_LSU_type_RAW.fasta</p><p>Non-aligned dataset of LSU gene region of the ex-type strains of <i>Saksenaea </i>spp.</p><p> </p><p>5. Saksenaea_LSU_type_aligned.fasta</p><p>Aligned dataset of LSU gene region of the ex-type strains of <i>Saksenaea</i> spp.</p><p> </p><p>6. Saksenaea_tef1_type_RAW.fasta</p><p>Non-aligned dataset of tef1 gene region of the ex-type strains of <i>Saksenaea</i> spp.</p><p> </p><p>7. Saksenaea_tef1_type_aligned.fasta</p><p>Aligned dataset of tef1 gene region of the ex-type strains of <i>Saksenaea</i> spp.</p>
Figure 1 in Description of Stenothoe lowryi sp. nov. (Crustacea: Amphipoda: Stenothoidae), from the Straits of Malacca, Malaysia
Figure 1. Map of Peninsular Malaysia with sampling site on Pangkor Island.
Figure 2 in Description of Stenothoe lowryi sp. nov. (Crustacea: Amphipoda: Stenothoidae), from the Straits of Malacca, Malaysia
Figure 2. Stenothoe lowryi sp. nov., holotype male, 5.3 mm, UKMMZ-1133.
Microgeographic population structuring in a genus of California trapdoor spiders and discovery of an enigmatic new species (Euctenizidae: Promyrmekiaphila korematsui sp. nov.)
<p>The recognition and delineation of cryptic species remains a perplexing problem in systematics, evolution, and species delimitation. Once recognized as such, cryptic species complexes provide fertile ground for studying genetic divergence within the context of phenotypic and ecological divergence (or lack thereof). Herein we document the discovery of a new cryptic species of trapdoor spider, <em>Promyrmekiaphila korematsui </em>sp. nov. Using subgenomic data obtained via target enrichment, we document the phylogeography of the California endemic genus <em>Promyrmekiaphila </em>and<em> </em>its constituent species, which also includes <em>P. clathrata </em>and <em>P. winnemem</em>. Based on these data we show a pattern of strong geographic structuring among populations but cannot entirely discount recent gene flow among populations that are parapatric, particularly for deeply diverged lineages within <em>P. clathrata</em>.<em> </em>The genetic data, in addition to revealing a new undescribed species, also allude to a pattern of potential phenotypic differentiation where species likely come into contact. Alternatively, phenotypic cohesion among genetically divergent <em>P. clathrata </em>lineages suggests that some level of gene flow is ongoing or occurred in the recent past. Despite considerable field collection efforts over many years, additional sampling in potential zones of contact for both species and lineages is needed to completely resolve the dynamics of divergence in <em>Promyrmekiaphila</em> at the population-species interface.</p>
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.