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Supplemental files to "A COI DNA Barcode Library for Anastrepha Schiner (Diptera: Tephritidae)"
<p>The attached files are the supplemental material from Moore et al., "A COI DNA Barcode Library for <em>Anastrepha </em>Schiner (Diptera: Tephritidae)". They contain various DNA sequence alignments, calculation tables, tree files, taxonomic information on <em>Anastrepha</em>, and a R script.</p>
FIGURE 1 in Comparisons of two cryptic Ampedus species (Coleoptera: Elateridae) by using classical systematics, ecological niche modeling, and DNA barcoding
FIGURE 1. Habitus photos and aedeagi drawings of examined species. A-B. Ampedus platiai, C-D. A. samedovi, E-F. A. pomonae (Aedeagi of A. platiai and A. samedovi are redrawn from Kabalak 2010 and aedeagus of A. pomonae is redrawn from Platia 1994.). BML: Basal struts of median lobe, BP: Basal piece, ML: Median Lobe, PDT: Paramere distal tooth, PR: Paramere.
FIG. 4 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 4. — Some examples of endemic earthworm species sampled in Corsica and their habitats (to their right): A, Scherotheca portonana L4 Qiu & Bouché, 1998; B, alpine pasture at Col de Vergio (Bouché#466); C, Scherotheca albomaculata Qiu & Bouché, 1998; D, open Mediterranean chaparral at Sainte-Lucie de PortoVecchio (Bouché#414); E, Eumenescolex emiliae L1 Qiu & Bouché, 1998; F, Pinus laricio L. forest at Zonza (Bouché#2932); G, Hormogaster insularis Bouché, 1970; H, Quercus suber L. open wood at Volpajola (Bouché#480). Scale bars: 5 cm.
FIG. 2 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 2. — Bayesian inference of the phylogenetic relationships of earthworms from Corsica based on their COI sequences. Species-level genetic lineages (as delimited by ASAP, barcode gap analysis and morphological data) are shown as black triangles in order to facilitate visualization and to display the amount of intra-lineage genetic divergence (indicated by the height of the triangle). Green circles: posterior probability values over 90; all the species-level clades showed values close to 100.
FIG. 1 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 1. — Distribution map of the sampling localities in Corsica Island. Locality codes refer to Table 1. Map base: Qgis.
FIG. 5 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 5. — Observed and estimated species diversity of earthworms in the island of Corsica: A, incidence-based rarefaction and extrapolation curves of species numbers;B, Chao asymptotic estimator of species numbers. The figure compares the results obtained when considering all species-level lineages obtained with DNA barcodes (All), when considering non-cryptic lineages only (NC) and when considering all endemic lineages (End). Solid lines represent rarefaction curves, whereas dashed lines represent extrapolation curves; shaded areas are 95% and error bars confidence intervals based on a bootstrap with 200 replications.
FIG. 3 in An updated checklist and a DNA barcode library for the earthworms (Crassiclitellata, Oligochaeta) of Corsica, France
FIG. 3. — Graphical representation of the number of earthworm species known from Corsica. Rectangle surfaces are proportional to species numbers.
Figure 4 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 4 Teutonia corsicanasp. nov., ♂ [CCDB 38559 F09], Ruisseau de Battesta, France: A – coxal and genital field, partial view; B – photograph of ejaculatory complex; C – palp, medial view; D – gnathosoma. Scale bars = 100 μm.
Figure 2 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 2 Results of ASAP analysis for COI sequences. (A) Distribution of pairwise differences, (B) Ranked pairwise differences.
Figure 1 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 1 Neighbour-Joining tree of the genusTeutonia, obtained from 17 nucleotide COI sequences.and the results of species delimitation analyses. Values near branches show bootstrap support (BS). The results of species delimitation by ASAP procedure are indicated by vertical bars. Country codes (alpha-2 code): DE – Germany, FR – France, MN – Montenegro, NO – Norway, TR – Turkey.
Figure 3 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 3 Teutonia corsicanasp. nov. (A-B, D-G – holotype ♀, Ruisseau de Tuara, France; C – ♀ [CCDB 38559 D12], preserved specimen, Riviere La Solenzara, France): A – coxal and genital field; B, C – genital field; D – palp, medial view (P-1 lacking); E – palp, lateral view; F – I-L-5 and -6; G – IV-L-5 and -6. Scale bars = 100 μm.
Figure 5 in A new water mite species of the genus Teutonia Koenike, 1889 from Corsica, France, based on morphological data and DNA barcodes (Acari, Hydrachnidia, Teutoniidae)
Figure 5 Teutonia cometes(Koch, 1837), ♀, Danilovgrad, spring under the bridge over the Zeta river, Montenegro: A – genital field; B – palp, medial view. Scale bar = 100 μm.
Figure 1 in Hydrodroma angelieri (Acari, Hydrachnidia: Hydrodromidae) a new water mite species from Corsica based on morphological and DNA barcode evidence
Figure 1 Hydrodroma angelieri sp. nov., holotype ♀, Tributary of Ruisseau de Canne, France: A – integument papillae; B – coxal field; C – genital field; D – palp, lateral view; E – palp, medial view; F – gnathosoma; G – chelicera. Scale bars = 100 μm.
Figure 1 in First DNA-barcode for the genus Aegyptobia (Trombidiformes: Tenuipalpidae) and molecular barcodes of spider mites (Trombidiformes: Tetranychidae) from Iran
Figure 1. Neighbor-Joining tree of the COI sequences using Tamura-Nei model. Scale bar represents number of nucleotide substitutions per site. Bootstrap was 1000 replicates. Numbers on nodes represent bootstrap values.
Figure 3 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 3. Mounted specimens illustrating the species of Microgastrinae recovered in this study. A, Cotesia glabrata Telenga ex Carcharodus alceae, Italy. Adult plus cocoons. Gregarious parasitoid; brood sizes vary considerably, host usually well grown or prepupal when killed. The other Cotesia species (near glabrata) look similar and behave in the same way. B, Dolichogenidea sp. near sicaria Marshall, ex Carcharodus alceae, Spain. Adult plus cocoon. Solitary parasitoid, killing the host while still quite young. C, Microgaster australis Thomson, ex Muschampia stauderi, Greece. Adult plus cocoon. Solitary parasitoid, usually killing the host as a prepupa. D, Microgaster nobilis Reinhard, ex Carcharodus alceae, Spain. Adult plus cocoon. Solitary parasitoid, usually killing the host as a prepupa. All specimens are in the collection of the National Museums of Scotland.
Figure 4 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 4. Interaction matrices showing the recorded interactions of Hesperiidae and their hostplants (A), Hesperiidae and their parasitoids (B) and parasitoids and hostplants of Hesperiidae (C). White squares indicate recorded interactions between the taxa in the corresponding row and column, while blue squares indicate lack of interaction.
Figure 2 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 2. Circular cladogram showing ecological interactions among European and North African Hesperiidae, their hostplants, and their microgastrine parasitoids, recovered through DNA barcoding for Hesperiidae and/or parasitoids. Hesperiid, parasitoid and plant cladograms are coloured in orange, blue and green, respectively. Lines representing interactions with parasitoids are coloured in blue, while lines involving hostplant interactions are coloured in green.
Figure 1 in Butterfly-parasitoid-hostplant interactions in Western Palaearctic Hesperiidae: a DNA barcoding reference library
Figure 1. Representation of the study system. Hesperiid larvae feeding on their hostplants can be attacked by a number of parasitoids, which can in turn be attacked by various hyperparasitoids. A, Spialia rosae on its hostplant Rosa sicula. B, third instar larva of Sp. rosae on a silk shelter. C, Microgaster australis parasitizing an L3 Sp. rosae larva. D, Gelis sp. parasitizing M. australis on its cocoon after emerging from the Sp. rosae larva. Drawings by Martí Franch.
FIGURE 2 in Mislabeling, illegal capture, and commercialization of Atlantic goliath grouper (Epinephelus itajara) on the Brazilian coast using DNA barcoding
FIGURE 2 | Phylogram based on cytochrome oxidase I (COI) gene amplification using the Neighbor-Joining method. The evolutionary distances were computed using the Kimura 2-parameter model with 10,000 repetitions for samples collected in the northern (Pará State: Bragança Fish Market n = 16 and Curuçá n = 2) and southern (São Paulo: Cananéia Fish Market n = 1; Paraná: Paranaguá Fish Market n = 1 and Curitiba Fish Market n = 4) Brazilian coasts. Bootstrap values are shown next to the branches. The sequences with the accession numbers were downloaded from GenBank.
FIGURE 1 in Mislabeling, illegal capture, and commercialization of Atlantic goliath grouper (Epinephelus itajara) on the Brazilian coast using DNA barcoding
FIGURE 1 | Distribution of sampling sites in the northern (Pará State: Bragança n = 20 and Curuçá n = 2) and southern (São Paulo: Cananéia n = 1; Paraná: Paranaguá n = 1 and Curitiba n = 4) Brazilian coasts.
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Allen Brain Atlas
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International Brain Laboratory public data
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OpenNeuro
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