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Dataset results
427 results for “Herpes”
Role for NF-kB in herpes encephalitis pathology in mice genocopying an inborn error of IRF3-IFN immunity
GEO Series GSE305693. Mus musculus. 15 samples. Type: Expression profiling by high throughput sequencing.
Effects of host miR-138 on herpes simplex virus 1 gene expression in Neuro-2a cells and their dependence of the binding sites on ICP0 mRNA
GEO Series GSE127501. Mus musculus; Human alphaherpesvirus 1. 12 samples. Type: Expression profiling by high throughput sequencing.
Widespread activation of antisense transcription of the host genome during Herpes simplex virus 1 infection
GEO Series GSE97009. Homo sapiens. 58 samples. Type: Expression profiling by high throughput sequencing; Third-party reanalysis.
Acid ceramidase of macrophages traps herpes simplex virus in multivesicular bodies and protects from severe disease
GEO Series GSE142175. Mus musculus. 15 samples. Type: Expression profiling by array.
Heterozygous SNORA31 mutations in patients with herpes simplex encephalitis
GEO Series GSE102078. Homo sapiens. 22 samples. Type: Other.
Single-cell RNA-sequencing of Herpes simplex virus 1-infected cells identifies NRF2 activation as an antiviral program
GEO Series GSE123782. Homo sapiens. 39 samples. Type: Expression profiling by high throughput sequencing.
RNA-seq identification of herpes simplex virus type 1 transcription in Neuro-2a cells overexpressing ONECUT2
GEO Series GSE241029. Mus musculus. 6 samples. Type: Expression profiling by high throughput sequencing.
Herpes Simplex Virus 1 and Adeno Associated Virus distribution in neurons of the murine trigeminal and superior cervical ganglia
GEO Series GSE151811. Mus musculus. 2 samples. Type: Expression profiling by high throughput sequencing.
Glutamine supplementation suppresses herpes simplex virus reactivation II
GEO Series GSE95714. Mus musculus. 18 samples. Type: Expression profiling by array.
Host miRNA molecular signatures in the brains of mice are associated with acute herpes simplex virus 1 encephalitis
GEO Series GSE51040. Mus musculus. 23 samples. Type: Expression profiling by array.
Lack of functional TCR-epitope interaction is associated with herpes zoster through reduced downstream T cell activation
<p><strong>Data for "Lack of functional TCR-epitope interaction is associated with herpes zoster through reduced downstream T cell activation"</strong></p> <p><strong>Data directories</strong></p> <ul> <li>bulk-1week</li> </ul> <p>Contains processed bulk TCR sequencing data from cohort 1.</p> <ul> <li>longitudinal</li> </ul> <p>Contains processed bulk TCR sequencing data from cohort 2.<br>Note that this is the same dataset as reported in the following reference (it is included again in this repository for completeness):<br>B. Ogunjimi, J. Van den Bergh, P. Meysman, S. Heynderickx, K. Bergs, H. Jansens, E. Leuridan, A. Vorsters, H. Goossens, K. Laukens, N. Cools, V. Van Tendeloo, N. Hens, P. Van Damme, E. Smits, P. Beutels, Multidisciplinary study of the secondary immune response in grandparents re-exposed to chickenpox. Sci Rep 7, 1077 (2017).</p> <ul> <li>single-cell</li> </ul> <p>Contains processed single cell data from cohort 1.</p> <ul> <li>stim</li> </ul> <p>Contains TCR data from stimulation experiments.</p> <p><strong>Script directories</strong></p> <ul> <li>src</li> </ul> <p>Contains various scripts used to generate the results and figures in the manuscript.</p> <p><strong>Result directories</strong></p> <ul> <li>results</li> </ul> <p>Contains the inbetween files for many of the analyses.<br>Contains the Seurat object for the single cell analysis reported in the paper.<br>Also used as output directory for the scripts listed in src.</p> <ul> <li>tcrex_results</li> </ul> <p>Full results from using the aforementioned data sets with the TCRex tool:<br>https://tcrex.biodatamining.be/</p>
Figure 1 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Figure 1 Graptopetalum paraguayense E. Walther.
Figure 4 from: Todorova N, Rangelov M, Dincheva I, Badjakov I, Enchev V, Markova N (2022) Potential of hydroxybenzoic acids from Graptopetalum paraguayense for inhibiting of herpes simplex virus DNA polymerase – metabolome profiling, molecular docking and quantum-chemical analysis. Pharmacia 69(1): 113-123. https://doi.org/10.3897/pharmacia.69.e79467
Figure 4 Fitting of phenolic acids in the DNA polymerase pocket.
The Analgesic Efficacy and Safety of Baclofen in Patients With Herpes Zoster
ClinicalTrials.gov study NCT07378046. IPD Sharing: YES. Countries: 1. Publications: 0.
A Study to Evaluate the Effect of Famciclovir in Reducing Herpes Virus Shedding
ClinicalTrials.gov study NCT00129818. IPD Sharing: Not stated. Countries: 1. Publications: 0.
Efficacy and Safety of Intravenous Dexamethasone Palmitate Treatments in Acute and Subacute Herpes Zoster Pain
ClinicalTrials.gov study NCT07344246. IPD Sharing: YES. Countries: 1. Publications: 0.
Multidisciplinary Hospital-Territory Vaccine Center: a Model for Achieving the Herpes Zoster Vaccine Coverage
ClinicalTrials.gov study NCT06334861. IPD Sharing: NO. Countries: 1. Publications: 0.
The Analgesic Efficacy and Safety of Venlafaxine in Patients With Herpes Zoster
ClinicalTrials.gov study NCT07361796. IPD Sharing: YES. Countries: 1. Publications: 0.
Bronchoscopic Score for Prediction of Herpes Simplex-virus Type 1 (HSV-1) Reactivation
ClinicalTrials.gov study NCT05331417. IPD Sharing: NO. Countries: 1. Publications: 0.
Observation on the Herpes Simplex Keratitis
ClinicalTrials.gov study NCT03013959. IPD Sharing: YES. Countries: 1. Publications: 0.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.