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Figure 1 in Mitogenomics and the genetic differentiation of contemporary Balaena mysticetus (Cetacea) from Svalbard

Figure 1. Haplotype network of complete mitogenomes of 20 contemporary Svalbard bowhead whales. Each circle represents a distinct haplotype (I–IX). Circle sizes reflect the number of specimens sharing a haplotype. Numbers and black dots indicate the number of variable sites between haplotypes. Samples A–I are taken from Nyhus et al. (2016).

Figure 1 in Mitogenomics of the endangered Mediterranean monk seal (Monachus monachus) reveals dramatic loss of diversity and supports historical gene-flow between Atlantic and eastern Mediterranean populations

Figure 1. Sampling sites (number of specimens per location in brackets) with the current Mediterranean monk seal distribution range in green.

Figure 1 in Near-complete phylogeny of extant Crocodylia (Reptilia) using mitogenome-based data

Figure 1. Maximum likelihood phylogenetic tree based on the resulting mitogenomes except control region for all known Crocodylia species. The mitogenomes employed have been identified by their accession number to the GenBank database. Ten species (two pythons, one lizard, five birds, two turtles) were used as outgroups to root the tree. The numbers on the nodes indicate ML bootstrap support (shown as a percentage) and Bayesian posterior probabilities. These letters (A, B and C) indicate the families in Crocodylia (Crocodylidae, Gavialidae and Alligatoridae). The head shapes and dentition in 'typical' examples of the three families of living Crocodylia (dorsal and side views) (Illustrations DSK, courtesy Weldon Owen Publishing)(Grigg & Kirshner, 2015).

Figure 2 in Near-complete phylogeny of extant Crocodylia (Reptilia) using mitogenome-based data

Figure 2. Time-calibrated phylogeny of the Crocodylia inferred from the complete mitogenomes. These letters (a and b) indicate the calibration points. The blue lines on nodes correspond to the 95% highest posterior density of the age of the node. The bottom axis is in millions of years (Myr). The climatic sequence of events including a global average δ 18O curve (right-hand axis) derived from benthic foraminifera which mirrors the major global temperature trends from the Palaeocene to the Pleistocene (Zachos et al., 2001, 2008). The establishment of ice sheets in the Northern Hemisphere is indicated by grey to black bars on top. Some key tectonic are listed (Zachos et al., 2001). These letters (A, B and C) indicate the families in Crocodylia (Crocodylidae, Gavialidae and Alligatoridae). The numbers on the nodes within Crocodylia indicate node numbers, corresponding to Table 3.

Figure 3 in Mitogenomics of the endangered Mediterranean monk seal (Monachus monachus) reveals dramatic loss of diversity and supports historical gene-flow between Atlantic and eastern Mediterranean populations

Figure 3. Mitochondrial genome clades sequenced in our study. A, female monk seal with its pup on Desertas Islands (Madeira); photo credit: Rosa Pires. B, Bayesian phylogeny using the complete mtDNA. Black dots indicate posterior probability values ≥ 0.95. (*) indicates historical specimens. The colours of the bars match the colours used on the network analyses and maps in Figure 2.

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Figure 3 in Mitogenomics of electric rays: evolutionary considerations within Torpediniformes (Batoidea; Chondrichthyes)

Figure 3. Maximum likelihood (ML) tree of concatenated protein-coding genes describing phylogenetic relationships amongst batoids. The ML bootstrap and Bayesian posterior probability values for each node are indicated (black circles: bootstrap value ≥ 90% and posterior probability of 1; grey circles: bootstrap value <90% and posterior probability of 1; white circles: bootstrap value <90% and posterior probability <1). The scale bar represents the number of nucleotide substitutions per site.

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Figure 2 in Mitogenomics of electric rays: evolutionary considerations within Torpediniformes (Batoidea; Chondrichthyes)

Figure 2. Schematic representation of the mitochondrial genome architecture, AT (blue) and CG (green) content of the tropical electric rays Narcine brasiliensis and Narcine bancroftii. Abbreviations: Atp, Adenosine Triphosphate synthase subunit; Cox, cytochrome oxidase subunit; Cytb, apocytochrome b; Nad, reduced nicotinamide adenine dinucleotide ubiquinone oxireductase subunit; rRNA, ribosomal RNA; tRNA, transfer RNA.

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Figure 1 in Mitogenomics of electric rays: evolutionary considerations within Torpediniformes (Batoidea; Chondrichthyes)

Figure 1. Phylogenetic hypotheses regarding the evolutionary relationships amongst batoid fishes. Trees were pruned and modified to better reflect the different levels of comparison and the taxa included in the present study. Reconstructions based on (A) partial mitochondrial and nuclear genes (Aschliman et al., 2012a) and (B) morphological characters (McEachran & Aschliman, 2004) of major groups. Competing hypotheses within Torpediniformes depicting (C) the monophyly (Claeson, 2014) and (D) the paraphyly (Naylor et al., 2012) of the genus Narcine.

FIGURE 4 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 4 Gene map of the mitochondrial genome of Deleaster bactrianus. Genes outside the map are transcribed counter clockwise (reverse strand), whereas those inside are transcribed clockwise (forward strand). The outermost circle shows the gene features, sandy brown for rRNAs, salmon for tRNAs, and light sea green for PCGs. The innermost circle shows the GC content calculated in every 50-site window.

FIGURE 6 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 6 Relative synonymous codon usage (RSCU) of Deleaster bactrianus. Codon families (in alphabetical order) are provided below the horizontal axis.

FIGURE 3 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 3 Deleaster taiwanensis Hayashi: A, habitus ♂; B, head ♂; C, pronotum ♂; D, tergite VIII ♂; E, tergite VIII ♀; F, sternite VIII ♂; G, sternite VIII ♀; H, abdominal segment IX–X ♂ (ventral view); I, abdominal segment IX–X ♀ (ventral view); J, aedeagus (ventral view); K, aedeagus (dorsal view); L, aedeagus (lateroventral view); M, aedeagus (lateral view). Scales: A = 3 mm; B, C = 1 mm; rest, 0.3 mm.

FIGURE 7 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 7 Inferred secondary structures of 22 tRNAs of Deleaster bactrianus. Inferred Watson-Crick bonds are illustrated by lines, whereas GU bonds by dots. The red bases are anticodon. The tRNAs are labelled with the abbreviations of their corresponding amino acids according to the IUPAC-IUB code.

FIGURE 2 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 2 Deleaster pekinensis Fairmaire: A, habitus ♀; B, head and pronotum ♀; C, tergite VIII ♂; D, tergite VIII ♀; E, ster- nite VIII ♂; F, sternite VIII ♀; G, abdominal segment IX–X ♂ (ventral view); H, abdominal segment IX–X ♀ (ventral view); I, aedeagus (ventral view); J, aedeagus (dorsal view); K, aedeagus (lateroventral view); L, aedeagus (lateral view). Scales: A = 3 mm; B = 1 mm; rest, 0.3 mm.

FIGURE 8 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 8 Cladogram of consensus tree of the first-rank model. It is built by the maximum likelihood and using 101 representative mitochondria within Staphylinidae, "Silphidae", and Leiodidae (outgroup). Clades A–F refer to those with strong bootstrap support. Tip labels with question mark indicate the representatives with suspect identity.

FIGURE 1 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 1 Deleaster bactrianus Semenov: A, habitus ♂; B, head and pronotum ♂; C, protarsus ♂; D, protarsus ♀; E, tergite VIII ♂; F, tergite VIII ♀; G, sternite VIII ♂; H, sternite VIII ♀; I, abdominal segment IX–X ♂ (ventral view); J, abdominal seg- ment IX–X ♀ (ventral view); K, aedeagus (ventral view); L, aedeagus (dorsal view); M, aedeagus (lateral view). Scales: A = 2 mm; B = 1 mm; C, D = 0.5 mm; rest, 0.3 mm.

FIGURE 5 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 5 Comparison of Deleaster bactrianus from Qinghai and Inner Mongolia. The red frame marks the only indel that was found in the cox1 alignments of the two specimens. "Query" refers to the Qinghai specimen, and "Sbjct" refers to the Inner Mongolian specimen. Sites since 1093/366 are disregarded here, as there is no difference.

FIGURE 10 in Review of the Chinese species of Deleaster Erichson, 1839 (Coleoptera, Staphylinidae, Oxytelinae) with a mitogenome of Deleaster bactrianus Semenov, 1900

FIGURE 10 Phylograms of the tree in Figs 8 (left) and 9 (right) with branch lengths proportional to the number of nucleotide substitutions per site.

FIGURE 1 in Comparative mitogenomes and phylogenetic analysisreveal taxonomicrelationship of genera Teredorus and Systolederus (Orthoptera, Tetrigoidea)

FIGURE 1. The RSCU results of T. hainanensis and T. bashanensis. Note: a: T. hainanensis, b: T. bashanensis.

FIGURE 2 in Comparative mitogenomes and phylogenetic analysisreveal taxonomicrelationship of genera Teredorus and Systolederus (Orthoptera, Tetrigoidea)

FIGURE 2. Phylogenetic results of 30 Orthoptera species based on the mtDNA dataset. Note: the numbers separated by "/" indicate bootstrap values in ML tree and posterior probabilities in BI tree, respectively.