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3,663 results for “Phylogenetic analysis”
Fig. 3. Evolutionary analysis conducted through a neighbor-joining phylogenetic tree between the cox1 in Detection of maize bushy stunt phytoplasma in leafoppers collected in native corn crops grown at high elevations in southeast Mexico
Fig. 3. Evolutionary analysis conducted through a neighbor-joining phylogenetic tree between the cox1 mini-barcode sequences obtained for the red speckled nymphs and Idiodonus wickhami (Hemiptera: Cicadellidae) (both marked with a circle) with reference sequences from GenBank. Bar 5 substitution in 100 positions.
Fig. 4. Evolutionary analysis conducted through a neighbor-joining phylogenetic tree between the 16S in Detection of maize bushy stunt phytoplasma in leafoppers collected in native corn crops grown at high elevations in southeast Mexico
Fig. 4. Evolutionary analysis conducted through a neighbor-joining phylogenetic tree between the 16S rRNA sequences amplified in this study from phytoplasma DNA, bar 1 substitution in 100 positions. Sequences in the grey square belong to the subgroup 16SrI-B. Sequences amplified from leafoppers (Hemiptera: Cicadellidae) Dalbulus elimatus marked with a circle and from Idiodonus wickhami marked with a square.
Fig. 3 in Phylogenetic analysis of the Common Krait (Bungarus caeruleus) in Pakistan based on mitochondrial and nuclear protein coding genes
Fig. 3. Mitochondrial and nuclear genes (ND4, Cyt b, COI, 12S rRNA, 16S rRNA, C-mos, RAG-1, and NT3) Bayesian phylogeny for Common Krait (Bungarus caeruleus).
Fig. 2 in Phylogenetic analysis of the Common Krait (Bungarus caeruleus) in Pakistan based on mitochondrial and nuclear protein coding genes
Fig. 2. Mitochondrial and nuclear genes (ND4, Cyt. b, COI, 12S rRNA, 16S rRNA, C-mos, RAG-1, NT3, and BDNF) based Maximum Likelihood phylogeny for Common Krait (Bungarus caeruleus).
Fig. 4. Phylogenetic analysis. Molecular analyses identified the specimens collected from CBW2 and CBW3 in Crassicaudiasis in three geographically and chronologically distant Cuvier's beaked whales (Ziphius cavirostris) stranded off Brazil
Fig. 4. Phylogenetic analysis. Molecular analyses identified the specimens collected from CBW2 and CBW3 as Crassicauda anthonyi, based on the ITS2 region, and supported by phylogenetic analysis. Analysis was performed by MEGA X 10.1 using the maximum likelihood method (1,000 bootstrap replicates) and included Habronema muscae as outgroup. GenBank accession numbers are listed along the species names. Branches with bootstrap support lower than 50% were collapsed. *Sequences obtained in this study.
Fig. 9. Strict consensus tree from phylogenetic analysis under extended implied weighting with 21 in New postcranial remains of large toxodontian notoungulates from the late Oligocene of Mendoza, Argentina and their systematic implications
Fig. 9. Strict consensus tree from phylogenetic analysis under extended implied weighting with 21 different values of k.
Fig. 3 in The brachyopoid Hadrokkosaurus bradyi from the early Middle Triassic of Arizona, and a phylogenetic analysis of lower jaw characters in temnospondyl amphibians
Fig. 3. Temnospondyl amphibian Hadrokkosaurus bradyi (Welles, 1947), holotype (UCMP 36199), early Anisian, northeastern Arizona. Stereopairs of the posterior part of the lower jaw in dorsal (A) and ventral (B) views. Note buttresses for articular (missing) projecting from prearticular and surangular, and proportions of postglenoid area.
Fig. 6 in The brachyopoid Hadrokkosaurus bradyi from the early Middle Triassic of Arizona, and a phylogenetic analysis of lower jaw characters in temnospondyl amphibians
Fig. 6. Strict consensus of 38 most parsimonious trees with bootstrap percentages based upon 10,000 replicates.
Fig. 2 in The brachyopoid Hadrokkosaurus bradyi from the early Middle Triassic of Arizona, and a phylogenetic analysis of lower jaw characters in temnospondyl amphibians
Fig. 2. Temnospondyl amphibian Hadrokkosaurus bradyi (Welles, 1947), holotype (UCMP 36199), early Anisian, northeastern Arizona. Stereopair of anterior part of lower jaw in mesial view; note large postsymphyseal foramen.
Fig. 5. A, B in The brachyopoid Hadrokkosaurus bradyi from the early Middle Triassic of Arizona, and a phylogenetic analysis of lower jaw characters in temnospondyl amphibians
Fig. 5. A, B. Comparisons between the skull of Vigilius wellesi Warren and Marsicano, 2000 (A) and the lower jaw of Hadrokkosaurus bradyi (Welles, 1947) (B) drawn to the same proportions; arrows point to changes in degree of curvature of the skull and jaw (skull modified from Warren and Marsicano 2000). C. Right lower jaw ramus of Hadrokkosaurus bradyi (Welles, 1947) in dorsal view showing lengths of segments used for calculating the degree of curvature of the ramus (see text for details). D. Close−up view of posterior part of UCMP 36199, early Anisian, northeastern Arizona.
Fig. 4. A in The brachyopoid Hadrokkosaurus bradyi from the early Middle Triassic of Arizona, and a phylogenetic analysis of lower jaw characters in temnospondyl amphibians
Fig. 4. A. Stereopair of UCMP 36205, early Anisian, northeastern Arizona; incomplete prearticular in dorsal view attributed to Hadrokkosaurus bradyi; arrows mark position and extent of lateral edge of contact area for articular. B. Stereopair of UCMP 36210, early Anisian, northeastern Arizona; broken angular in dorsal view presumably incorrectly attributed to Hadrokkosaurus bradyi; note pronounced boss−like adductor process.
Fig. 10. Phylogenetic analysis. A, B in A new discosauriscid seymouriamorph tetrapod from the Lower Permian of Moravia, Czech Republic
Fig. 10. Phylogenetic analysis. A, B. Two of six most parsimonious trees recovered by PAUP* 40b10 from a heuristic search of 33 taxa and 150 characters. C. Bootstrap percentages on a 50% majority−rule consensus tree.
Fig. 13. Phylogenetic analysis with the poorly−known latest Paleocene genus Afrodon included. A in The oldest and youngest records of afrosoricid placentals from the Fayum Depression of northern Egypt
Fig. 13. Phylogenetic analysis with the poorly−known latest Paleocene genus Afrodon included. A. Single most parsimonious tree derived from analysis with some multistate characters ordered and scaled; tree length = 18748.435, consistency index excluding uninformative characters = 0.49, retention index = 0.44, rescaled consistency index = 0.28. B. Adams consensus of 97 equally parsimonious trees derived from analysis with all multistate characters unordered, and Afrodon included; tree length = 19582, consistency index excluding uninformative characters = 0.49, retention index = 0.45, rescaled consistency index = 0.28. Dashed lines indicate branches that are present in the Adams tree, but not in the strict consensus of all MPTs.
Fig. 1 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 1. Map of Mali indicating three localities discovered in the 1999 CNRST−SUNY expedition. Boundary between the Illummeden and Tauodeni basins in northern Mali is outlined in light gray. Mali−8 marks localities yielding fossils of Myliobatidae. Dark Gray marks exposed basement rocks in the Adrar des Iforas Mountains; white marks Proterozoic structure that connected the two light gray basin periodically during the Cretaceous– Paleogene.
Fig. 6 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 6. Phylogenetic relationships and stratigraphic distribution of Myliobatidae. Epochs are not drawn to scale.
Fig. 3. The fossil stingray Myliobatis wurnoensis White, 1934 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 3. The fossil stingray Myliobatis wurnoensis White, 1934 from Maastrichtian of Mali. A, B. Partial upper dental plates. A. CNRST−SUNY−5 in posterior (A1), occlusal (A2), and basal (A3) views. B. CNRST−SUNY−37 in posterior (B1), occlusal (B2), and basal (B3) views. C. Partial lower dental plate, CNRST− SUNY−3 in occlusal (C1) and basal (C2) views. Anterior is to top of page for all images except A1 and B1, which are in posterior view. Scale bars 10 mm.
Fig. 2 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 2. Composite stratigraphic sections of localities Mali−7, −8, and −10. Relative stratigraphic positions of index fossils and inferred depositional settings supporting age of Myliobatis wurnoensis (Mali−8). Index fossils from Mali−7, −8, and −10. Lower gray line is the inferred KT boundary in this section and the upper gray line is the inferred position of the Paleocene–Eocene boundary in this section. Abbreviations: CG, conglomerate; LS, limestone; MS, shale; SS, sandstone.
Fig. 5 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 5. Summary of unambiguous character transformations across Myliobatidae (node−B) that were optimized on all most parsimonious trees. Black boxes have a CI = 1.0 and white boxes have a lower CI value. Bold face denotes extinct taxa.
Fig. 8 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 8. Comparative extinct taxa of Myliobatiformes; known ages mapped onto Fig. 6. A. Hypolophites myliobatoides Stromer, 1910, NHM P18781; A1, occlusal view, anterior to top; A2, lateral view, anterior to left; A3, root view, anterior to top. B. Brachyrhizodus wichitaensis Romer, 1942, NHM P89095; B1, occlusal view; anterior undetermined; B2, root view; anterior undetermined. C. Apocopodon sericius, NHM P24670, C1, occlusal view, anterior to top; C2, lateral view, anterior to left; C3, root view, anterior to top. D. Igdabatis sigmodon, TMM 45892−1; D1, occlusal view, anterior to top; D2, posterior view; D3, root view, anterior to bottom; D4, lateral view, anterior to left. E. Myliobatis striatus, NHM P.66859; E1, occlusal view, anterior to top; E2, root view, anterior to top; E3, posterior view; E4, lateral view, anterior to left. F. Aetobatus arcuatus, SMNH 12656−3; F1, occlusal view, anterior to top; F2, root view, anterior to top; F3, anterior view; F4, lateral view, anterior to left. Scale bars 10 mm.
Fig. 4 in First Mesozoic record of the stingray Myliobatis wurnoensis from Mali and a phylogenetic analysis of Myliobatidae incorporating dental characters
Fig. 4. Strict consensus of eight most parsimonious trees (MPT). A. Tree from full analysis with Myliobatidae condensed as single terminal taxon in gray box labeled "B". B. Expanded Myliobatidae portion of tree, which is identical on all eight MPTs. TL = 141, CI = 0.6312, HI = 0.3688, RI = 0.8844, RC = 0.5583. Bold face in B denotes extinct taxa.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.