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Figs 6–7. Nasiternella regia Riedel, 1914 in Nasiternella regia, a redescription of the adult and neotype designation (Diptera: Pediciidae)
Figs 6–7. Nasiternella regia Riedel, 1914 (Slovakia, Diviacka Nová Ves). 6 – male (photo J. Starý, 2 Oct., 2011); 7 – female (photo J. Starý, 25 Sept., 2012).
Cell type specificity of glucocorticoid signaling in the adult mouse hippocampus
<p>The present study is based on the 10X scRNA-seq dataset published by the Allen Institute for Brain Science and publicly available at: <a href="https://portal.brain-map.org/atlases-and-data/RNA-seq/mouse-whole-cortex-and-hippocampus-10x">https://portal.brain-map.org/atlases-and-data/RNA-seq/mouse-whole-cortex-and-hippocampus-10x</a>. The cells from the hippocampus region were selected from the gene count expression matrix and pre-processed in R v3.6.1 according to the Seurat v3.1.5 standard pre-processing workflow for quality control, normalization, and analysis of scRNA-seq data. Here we make the final seurat object and other datasets further used in the code (<a href="https://github.com/eviho/10XHip2021_VihoEMG">https://github.com/eviho/10XHip2021_VihoEMG</a>) available for download. </p>
Figure 20 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 20 Parabonzia xinningensis Chen & Jin sp. nov., protonymph: A – subcapitulum; B – palp telofemur branched (3 tines) seta. Scale represents 50 μm.
Figure 19 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 19 Parabonzia xinningensisChen & Jin sp. nov., protonymph: A – dorsal idiosoma; B – ventral idiosoma. Scale represents 100 μm.
Figure 16 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 16 Parabonzia xinningensisChen & Jin sp. nov., deutonymph: A – palp; B – chelicerae; C – subcapitulum. Scale represents 100 μm.
Figure 17 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 17 Parabonzia xinningensis Chen & Jin sp. nov., deutonymph: A – subcapitulum; B – palp telofemur branched (3 tines) seta. Scale represents 50 μm.
Figure 18 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 18 Parabonzia xinningensisChen & Jin sp. nov., deutonymph: A–D – leg I–IV respectively. Scale represents 100 μm.
Figure 15 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 15 Parabonzia xinningensisChen & Jin sp. nov., deutonymph: A – dorsal idiosoma; B – ventral idiosoma. Scale represents 100 μm.
Figure 13 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 13 Parabonzia xinningensisChen & Jin sp. nov., tritonymph: A – palp; B – chelicerae; C – subcapitulum. Scale represents 100 μm.
Figure 8 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 8 Parabonzia xinningensisChen & Jin sp. nov., male: A – dorsal of entire body; B – ventral of entire body. Scale represents 100μm.
Figure 12 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 12 Parabonzia xinningensisChen & Jin sp. nov., tritonymph: A – dorsal idiosoma; B – ventral idiosoma. Scale represents 100 μm.
Figure 6 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 6 Parabonzia xinningensisChen & Jin sp. nov., female: A – palp telofemur branched (4 tines) seta; B–D – subcapitulum, venter. Scale represents 50 μm.
Figure 1 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 1 Parabonzia xinningensis Chen & Jin sp. nov., female: A – dorsal of entire body; B – ventral of entire body. Scale represents 100 μm.
Figure 11 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 11 Parabonzia xinningensis Chen & Jin sp. nov., male: A–D – leg I–IV respectively. Scale represents 100 μm.
Figure 2 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 2 Parabonzia xinningensisChen & Jin sp. nov., female: A – dorsal idiosoma; B – ventral idiosoma. Scale represents 100 μm.
Figure 5 in A new species of Parabonzia (Trombidiformes: Cunaxidae) based on adults and nymphs with a key to the world species
Figure 5 Parabonzia xinningensisChen & Jin sp. nov., female: A – palp; B – chelicerae; C – subcapitulum. Scale represents 100 μm.
Multistate modeling of Florida scrub-jay adult survival and breeding transitions
<p><strong>Metadata for data file “MS4APR2020 ALL ENTER 2 STATES.txt” for the research published in Ecosphere Article ECS21-0698</strong></p> <p>Multistate modeling of Florida scrub-jay adult survival and breeding transitions</p> <p>David R. Breininger<sup>1</sup>†, Geoffrey M. Carter<sup>1</sup>, Stephanie A. Legare<sup>1</sup> William V. Payne<sup>1</sup>, Eric D. Stolen<sup>1</sup>, Daniel J. Breininger<sup>2</sup>, James E. Lyon<sup>3</sup></p> <p><sup>1</sup>Herndon Solutions Group, LLC, NASA Environmental and Medical Contract, NEM-022, Kennedy Space Center, FL 32899, U.S.A.</p> <p><sup>2</sup>Department of Mathematics, Florida Institute of Technology, Melbourne FL, 32899 U.S.A.</p> <p><sup>3</sup>Merritt Island National Wildlife Refuge, Titusville FL 32901, U.S.A.</p> <p>†<em> Corresponding author: </em>e-mail: <a href="mailto:david.r.breininger@nasa.gov">david.r.breininger@nasa.gov</a></p> <p>The data uses input file format described in the Program MARK manual (White and Burnham 1999, Cooch and White 2006). Each record (row) starts with an adult bird’s capture history, followed by group variables (each bird belongs to only one group) and then covariates, which here are all time specific. Time starts with 2001 and ends with 2015. Periods “.” in the capture history represented birds that were censored because the study sites were discontinued. </p> <table> <tbody> <tr> <td> <p> </p> <p>The first 15 columns represent states from 2001 to 2015 where “I” refers to nonbreeder, “2” refers to breeder and “0” occurs when the bird is not observed.</p> </td> </tr> <tr> <td> <p>Spaces occur after the capture history and between group variables and covariates.</p> </td> </tr> <tr> <td> <p>The first group variable identifies males if given a "1".</p> </td> </tr> <tr> <td> <p>The second group variable identifies females if given a :1".</p> </td> </tr> <tr> <td> <p>The third and final group membership identifies birds of unknown sex if given a "1".</p> </td> </tr> <tr> <td> <p>All following data refer to time-specific covariates except for the semicolon at the end of each individual's record.</p> </td> </tr> <tr> <td> <p>The first 14 covariates refer to whether a bird resided on the study site edge (0) or interior (1).</p> </td> </tr> <tr> <td> <p>The 2nd set of 14 covariates refer density (number of pairs/potential pairs) within the local population.</p> </td> </tr> <tr> <td> <p>The 3rd set of 14 covariates refer to population breeder mortality rates (number of banded breeders that died/number of banded breeders).</p> </td> </tr> <tr> <td> <p>The final set of 14 covariates refer to mean family group size of adults in each local population.</p> </td> </tr> </tbody> </table>
Figures 3–4. Aporus hirsutus adult feeding. 3 in Nesting behavior, ecology, and functional morphology of the trapdoor spider-hunting spider wasp Aporus (Plectraporus) hirsutus (Banks) (Hymenoptera: Pompilidae)
Figures 3–4. Aporus hirsutus adult feeding. 3) Aporus hirsutus female taking nectar from flowers of Eriogonum parvifolium, Vandenberg Air Force Base, Santa Barbara County, CA; 6 August 2014; A. Abela. Photograph © Alice Abela. 4) Aporus hirsutus female with immobilized Aptostichus simus, immature, on sand, Surf Beach at Vandenberg Air Force Base, Santa Barbara County, CA; 28 March 2015; A. Abela. The wasp appressed her mouthparts and basal antennal segments to the paralyzed prey and, apparently, used this individual only for adult feeding. Photograph © Alice Abela.
Avian botulism is a primary, year-round threat to adult survival in the endangered Hawaiian Duck (Anas wyvilliana) on Kaua'i, Hawai'i, USA
<p>Adult survival is the most important demographic parameter influencing population dynamics for many bird taxa. Thus, understanding how survival probabilities and causes of mortality vary throughout the annual cycle is critical for developing informed and effective management strategies. In this study, we used radio-telemetry data to evaluate the effects of biotic (e.g., sex, peak [September–April] vs. off-peak [May–August] nesting seasons) and abiotic factors (e.g., rainfall, year, bi-monthly interval) on adult survival, estimate annual survival probabilities, and identify primary sources of mortality for Hawaiian Ducks (<em>Anas wyvilliana</em>), an endangered, non-migratory dabbling duck, on the island of Kaua'i, Hawai'i, USA over 2013 and 2014. Additionally, we used contemporaneous Hawaiian Duck carcass recovery and surveillance data to examine temporal and climatic associations with avian botulism outbreaks. Our results suggested bi-monthly survival decreased with total rainfall during the preceding two-month interval. Survival did not vary with sex, between peak and off-peak nesting seasons, or between the two years of this study. Annual survival probabilities (62–80%) were relatively low compared to the closely related Laysan Duck (<em>Anas laysanensis</em>) on Laysan Island. Primary causes of mortality included avian botulism and presumed predation by cats (<em>Felis catus</em>). The botulism surveillance dataset revealed support for the effect of rainfall on the number of sick and dead birds recovered (<em>n</em> = 216), with generally a greater number of recoveries during months with middle-range total rainfall during the concurrent and preceding months. Our study provides critical baseline demographic data for population monitoring and highlights the importance of managing botulism risk and non-native mammalian predators for the recovery of the endangered Hawaiian Duck.</p>
A robust method for the measurement of social reward in adult mice
<p>Dataset contains four files.</p> <p><strong>File 1. Harda_et_al._2022_all_data.xlsx</strong></p> <p>All data used in the publication. Results of the social conditioned place preference test perofmed on adult female laboratory mice (strain: C57BL/6).</p> <p><strong>File 2. Harda_et_al._2022_initial_pref_30_70%.xls</strong></p> <p>All data contained in File 1, except for animals that showed initial preference for any of the contexts exceeding 70%.</p> <p><strong>File 3. Harda_et_al._2022_initial_pref_30_70%_trimmed.xlsx</strong></p> <p>Data contained in File 2, randomly trimmed to the same number of animals for each social context. Trimming was performed separately for each experimental group. Data were trimmed by custom R script (File 4).</p> <p><strong>File 4. trimmer.R</strong></p> <p>R script used to randomly trimm data to the same number of animals for each social context.</p>
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.