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638 results for “biomes”
Data from: Decomposition of leaf litter mixtures across biomes: The role of litter identity, diversity and soil fauna
<p class="CxSpFirst">1. At broad spatial scales, the factors regulating litter decomposition remain ambiguous, with the understanding of these factors largely based on studies investigating site-specific single litter species, whereas studies using multi litter species mixtures across sites are rare.</p> <p class="CxSpMiddle">2. We exposed in microcosms containing single species and all possible mixtures of four leaf litter species differing widely in initial chemical and physical characteristics from a temperate forest to the climatic conditions of four different forests across the northern hemisphere for one year.</p> <p class="CxSpMiddle">3. Calcium, magnesium and condensed tannins predicted litter mass loss of single litter species and mixtures across forest types and biomes, regardless of species richness and microarthropod presence. However, relative mixture effects differed among forest types and varied with the access to the litter by microarthropods. Access to the microcosms by microarthropods modified the decomposition of individual litter species within mixtures, which differed among forest types independent of litter species richness and composition of litter mixtures. However, soil microarthropods generally only little affected litter decomposition.</p> <p>4. <i>Synthesis</i>. We conclude that litter identity is the dominant driver of decomposition across different forest types and the non-additive litter mixture effects vary among biomes despite identical leaf litter chemistry. These results suggest that across large spatial scales the environmental context of decomposing litter mixtures, including microarthropod communities, determine the decomposition of litter mixtures besides strong litter trait based effects.</p>
Data from: Contrasting scales of local persistence between monsoonal and arid biomes in closely related, low-dispersal vertebrates
Aim: Focussing on pairs of sister species across three genera of scincid lizards, we use genomic evidence to test for larger-scale, late-Pleistocene changes in distributions of lizards in the Australian Arid Zone (AZ) than in the adjacent Monsoonal Tropics (MT). Location: Northern and central Australia. Taxon: Scincidae: Squamata. Methods: We sequenced ~ 2000 nuclear exons and one mitochondrial gene across the distributions of species with primarily MT or AZ distributions from three genera of lizards. Using phylogenetic analysis and population structure analyses we identified major phylogeographic lineages and then compared the spatial scale of structuring and tested for recent demographic expansions. Results: Two genera in particular, Proablepharus and Morethia, showed deeper and more geographically localised phylogeographic diversity in the MT than the AZ. In the MT, localised diversity was prevalent in the relatively mesic regions. By contrast, the AZ was characterised by widespread and often genetically uniform lineages and a higher proportion of these had signals of recent population expansion. Main conclusions: Consistent with other recent, but mostly less genetically extensive studies, our results point to deeper and more localised diversity in MT compared to AZ. In turn, this suggests higher local persistence in more mesic and topographically diverse biome through the late Quaternary climate fluctuations. For the AZ, geographically extensive range expansions have likely contributed to the low spatial turnover of this exceptionally rich lizard fauna.
Insect Galls-Host Plants in Biomes Series (Cerrado) v1.0.1
<p>Insect Galls-Host Plants in Biomes Series (Cerrado). Dataset v1.0.1</p>
FIGURE 13 in A remarkable new species of Micropeza Meigen (Diptera: Micropezidae) from Caatinga biome, Brazil
FIGURE 13. Distribution of Micropeza Meigen species with finger-shaped projection on costal vein (males).
FIGURES 4–8 in A remarkable new species of Micropeza Meigen (Diptera: Micropezidae) from Caatinga biome, Brazil
FIGURES 4–8. Micropeza chiroptera sp. nov., holotype ³. 4–6. Head; 4. Dorsal view; 5. Frontal view; 6. Lateral view; 7. Thorax, dorsal view; 8. Mid femur, anterior view.
FIGURE 4. Oxyascaris caatingae n in Two new species of Cosmocercidae (Nematoda: Cosmocercoidea) of Leptodactylus macrosternum Miranda-Ribeiro (Anura: Leptodactylidae) from Caatinga Biome Brazil
FIGURE 4. Oxyascaris caatingae n. sp. (A) anterior region, male, ventral view. (B) anterior region, male, lateral view. (C) anterior end, male, apical view. (D) posterior region, male, ventral view. (E) posterior region, male, lateral view. (F) tail, male, lateral view. (G) tail, male, ventral view; (H) tail of female, lateral view. (I) left spicule, ventral view. (J) gubernaculum, ventral view. (k) vulva, ovijector, and eggs, lateral view.
FIGURE 2. Oxysomatium petrolinensis n in Two new species of Cosmocercidae (Nematoda: Cosmocercoidea) of Leptodactylus macrosternum Miranda-Ribeiro (Anura: Leptodactylidae) from Caatinga Biome Brazil
FIGURE 2. Oxysomatium petrolinensis n. sp. (A) total female length. (B) anterior end, male, apical view. (C) anterior region, male, ventral view. (D) anterior region, male, lateral view. (E) posterior region, male, ventral view. (F) posterior region, male, lateral view. (G) tail, male, lateral view. (H) gubernaculum, ventral view. (I) tail, female, lateral view. (J) vulva, ovijector and eggs, lateral view.
FIGURE 5. Oxyascaris caatingae n in Two new species of Cosmocercidae (Nematoda: Cosmocercoidea) of Leptodactylus macrosternum Miranda-Ribeiro (Anura: Leptodactylidae) from Caatinga Biome Brazil
FIGURE 5. Oxyascaris caatingae n. sp. (A) anterior end, male, apical view (white arrows indicate the cephalic papillae). (B) anterior end, female, apical view (white arrows indicate the cephalic papillae). (C) posterior region, male, latero ventral view. (D) tail, female, latero venral view. (E) tail, male, latero ventral view. (F) cloacal region, male, latero ventral view. (G) tip of tail, male, latero ventral view. (*—somatic papillae; 1st–9th—first to ninth post cloacal papillae; a—amphid; ad—ad cloacal papillae; an—anus; dl—dorsal lip; lvl—latero ventral lip; pre—pre cloacal papillae; u—unpaired pre cloacal papillae).
FIGURE 3. Oxysomatium petrolinensis n in Two new species of Cosmocercidae (Nematoda: Cosmocercoidea) of Leptodactylus macrosternum Miranda-Ribeiro (Anura: Leptodactylidae) from Caatinga Biome Brazil
FIGURE 3. Oxysomatium petrolinensis n. sp. (A) anterior region, male, dorsal view. (B) anterior end, male, dorsal view (white arrows indicate the cephalic papillae). (C) posterior region, male, latero ventral view (white arrows indicate post cloacal papillae). (D) cloacal region, male, latero ventral view. (E) tail filament, male, latero ventral view. (F) tail, female, latero venral view. (*—somatic papillae; 1st–7th—first to seventh post cloacal papillae; a—amphid; ad—ad cloacal papillae; ba—body alae; dl—dorsal lip; lvl—latero ventral lip; pre—pre cloacal papillae; u—unpaired pre cloacal papillae).
FIGURE 1 in Two new species of Cosmocercidae (Nematoda: Cosmocercoidea) of Leptodactylus macrosternum Miranda-Ribeiro (Anura: Leptodactylidae) from Caatinga Biome Brazil
FIGURE 1. Type localities of Oxysomatium petrolinensis n. sp. and Oxyascaris caatingae n. sp. in municipality of Petrolina, state Pernambuco, Brazil. Abbreviations: BA – state of Bahia; PE – state of Pernambuco; PI – state of Piauí.
Data from: Diversification across biomes in a continental lizard radiation
Ecological opportunity is a powerful driver of evolutionary diversification, and predicts rapid lineage and phenotypic diversification following colonisation of competitor-free habitats. Alternatively, topographic or environmental heterogeneity could be key to generating and sustaining diversity. We explore these hypotheses in a widespread lineage of Australian lizards: the Gehyra variegata group. This clade occurs across two biomes: the Australian monsoonal tropics (AMT), where it overlaps a separate, larger bodied clade of Gehyra and is largely restricted to rocks; and in the larger Australian arid zone (AAZ) where it has no congeners and occupies trees and rocks. New phylogenomic data and coalescent analyses of AAZ taxa resolve lineages and their relationships and reveal high diversity in the western AAZ (Pilbara region). The AMT and AAZ radiations represent separate radiations with no difference in speciation rates. Most taxa occur on rocks, with small geographic ranges relative to widespread generalist taxa across the vast central AAZ. Rock-dwelling and generalist taxa differ morphologically, but only the lineage-poor central AAZ taxa have accelerated evolution. This accords with increasing evidence that lineage and morphological diversity are poorly correlated, and suggests environmental heterogeneity and refugial dynamics have been more important than ecological release in elevating lineage diversity.
Data from: Geographic population structure of the African malaria vector Anopheles gambiae suggests a role for the forest-savannah biome transition as a barrier to gene flow
The primary Afrotropical malaria mosquito vector Anopheles gambiae sensu stricto has a complex population structure. In western Africa, this species is split into two molecular forms and displays local and regional variation in chromosomal arrangements and behaviours. To investigate patterns of macro-geographic population substructure, 25 An. gambiae samples from 12 African countries were genotyped at 13 microsatellite loci. This analysis detected the presence of additional population structuring, with the M-form being subdivided into distinct west, central and southern African genetic clusters. These clusters are coincident with the central African rainforest belt and northern and southern savannah biomes, which suggests restrictions to gene flow associated with the transition between these biomes. By contrast geographically patterned population substructure appears much weaker within the S-form.
Data from: The future distribution of the savannah biome: model-based and biogeographic contingency
The extent of the savanna biome is expected to be profoundly altered by climatic change and increasing atmospheric CO2 concentrations. Contrasting projections are given when using different modelling approaches to estimate future distributions. Furthermore, biogeographic variation within savannas in plant function and structure is expected to lead to divergent responses to global change. Hence the use of a single model with a single savanna tree type will likely lead to biased projections. Here we compare and contrast projections of South American, African, and Australian savanna distributions from a physiologically-based statistical distribution model - the Thornley transport resistance model (TTR-SDM) - and three versions of a dynamic vegetation model (DVM) designed and parameterized separately for specific continents. We show that attempting to extrapolate any continent-specific model globally biases projections. By 2070 all DVMs generally project a decrease in the extent of savannas at their boundary with forests, whereas the TTR-SDM projects a decrease in savannas at their boundary with aridlands and grasslands. This difference is driven by forest and woodland expansion in response to rising atmospheric CO2 concentrations in DVMs, unaccounted for by the TTR-SDM. We suggest that the most suitable models of the savanna biome for future development are individual-based dynamic vegetation models designed for specific biogeographic regions.
Data from: Co-declining mammal-dung beetle faunas throughout the Atlantic Forest biome of South America
The millennial-scale evolutionary relationships between mammals and dung beetles have been eroded due to several drivers of contemporary biodiversity loss. Although some evidence of co-decline has been shown for mammals and dung beetles at some Neotropical sites, a biome-scale analysis for the entire Atlantic Forest of South America would strengthen our understanding of how relictual sets of mammal species can affect dung beetle co-occurrences and co-declines. We therefore collated hundreds of assemblages of both dung beetles and medium- to large-bodied mammals throughout the world's longest tropical forest latitudinal gradient to examine to what extent mammal assemblages may exert a positive influence on dung beetle species composition and functional assembly, and whether this relationship is scale dependent. We also collated several climatic and other environmental variables to examine the degree to which they shape mammal-dung beetle relationships. The relationships between local mammal and dung beetle faunas were examined using regression models, variation partitioning, dissimilarity indices, and ecological networks. We found a clear positive relationship between mammal and dung beetle species richness across this forest biome, indicating an ongoing process of mammal-dung beetle niche-mediated co-decline. We found a strong relationship between the species composition of both taxa, in which dung beetle species dissimilarity apparently track changes in mammalian dissimilarity, typically in 80% of all cases. Co-variables such as phytomass and climatic variables also influenced mammal-dung beetle patterns of co-decline along the Atlantic Forest. We conclude that dung beetle diversity and community assembly are shaped by the remaining co-occurring mammal assemblages and their functional traits, and both groups were governed by environmental features. We emphasize that ecosystem-wide effects of mammal population declines remain poorly understood both quantitatively and qualitatively, and curbing large vertebrate defaunation will ensure the persistence of co-dependent species.
Data from: Prediction of phylogeographic endemism in an environmentally complex biome.
Phylogeographic endemism, the degree to which the history of recently evolved lineages is spatially restricted, reflects fundamental evolutionary processes such as cryptic divergence, adaptation and biological responses to environmental heterogeneity. Attempts to explain the extraordinary diversity of the tropics, which often includes deep phylogeographic structure, frequently invoke interactions of climate variability across space, time and topography. To evaluate historical versus contemporary drivers of phylogeographic endemism in a tropical system, we analyse the effects of current and past climatic variation on the genetic diversity of 25 vertebrates in the Brazilian Atlantic rainforest. We identify two divergent bioclimatic domains within the forest and high turnover around the Rio Doce. Independent modelling of these domains demonstrates that endemism patterns are subject to different climatic drivers. Past climate dynamics, specifically areas of relative stability, predict phylogeographic endemism in the north. Conversely, contemporary climatic heterogeneity better explains endemism in the south. These results accord with recent speleothem and fossil pollen studies, suggesting that climatic variability through the last 250 kyr impacted the northern and the southern forests differently. Incorporating sub-regional differences in climate dynamics will enhance our ability to understand those processes shaping high phylogeographic and species endemism, in the Neotropics and beyond.
Data from: Patterns and drivers of aquatic invertebrate diversity across an arid biome
Managing and restoring faunal diversity across large areas requires an understanding of the roles of connectivity and dispersal in driving community patterns. We sought to determine the influence of connectivity, water regime, water source, geographical location, and dispersal traits on patterns of aquatic invertebrate diversity across a continent-wide arid biome. We compiled data on freshwater invertebrate assemblages from sites spanning the breadth of arid Australia. Univariate analyses (analysis of variance and rarefaction) revealed that alpha and gamma diversity across sites decreased as latitude increased. Multivariate analyses (ordination and analysis of similarity) revealed that community composition had considerable fidelity to geographic regions. Hydrological connectivity was strongly associated with riverine community composition although water rarely flowed (often less than annually). Hydrologically isolated sites (springs and rockholes) supported communities that were markedly dissimilar to hydrologically connected sites, and to each other. We investigated the influence of dispersal on diversity patterns by examining Distance Decay Relationships for each of four dispersal trait groups (obligate aquatic and passive, weak, and strong aerial dispersers) on the basis of geodesic (shortest path) distances between pairs of sites and Mantel tests. We did not detect clear differences between dispersal traits and distance decay relationships at the continental scale, even for the two groups with the lowest dispersal ability (obligate aquatics and passive dispersers.) Our results suggest that the loss of hydrological connectivity from water developments in arid lands (for example, the impoundment of intermittent rivers) is likely to affect macroinvertebrates. However, the exact flow mechanisms underlying such changes remain to be determined.
Data from: A new species of Allophryne (Anura: Allophrynidae) from the Atlantic Rain Forest biome of eastern Brazil
A new species of the genus Allophryne is described and, in contrast to its congeners that occur in the Amazon Basin, is based on specimens obtained in Uruçuca, State of Bahia, in the Atlantic Rain Forest of eastern Brazil. Allophryne relicta sp. nov. is characterized by a medium body size for the genus (snout–vent length range 19.9–21.9 mm in males); large head (head width about 35% of SVL); large, red-orange eyes, with a large black transversal stripe on iris; dorsum covered by few tubercles and many scattered black dots; dorsolateral surfaces cream with dark brown, elongate, anastomosed spots, and venter clear gray with scattered small white tubercles; presence of a line of tubercles on the ventrolateral surface of forearm; advertisement call formed by a multi-pulsed note of 0.509 ± 0.029 s in duration and emitted at intervals of 1.287 ± 0.500 s, with notes composed of 28.58 ± 1.84 pulses at a dominant frequency of 3828 ± 82.28 Hz; call-note emission rate of 34.46 notes/min and pulse emission rate of 56.13 ± 1.25 s. The molecular phylogeny supports the placement of A. relicta sp. nov. as sister taxon of a clade formed by A. resplendens + A. ruthveni.
Data from: Protected areas buffer the Brazilian semi-arid biome from climate change
The Caatinga is a botanically unique semi-arid ecosystem in northeast Brazil whose vegetation is adapted to the periodic droughts that characterize this region. However, recent extreme droughts events caused by anthropogenic climate change have challenged its ecological resilience. Here, we evaluate how deforestation and protection status affect the response of the Caatinga vegetation to drought. Specifically, we compared vegetation responses to drought in natural and deforested areas as well as inside and outside protected areas, using a time-series of satellite-derived Normalized Difference Vegetation Index (NDVI) and climatic data for 2008–2013. We observed a strong effect of deforestation and land protection on overall vegetation productivity and in productivity dynamics in response to precipitation. Overall, deforested areas had significantly lower NDVI and delayed greening in response to precipitation. By contrast, strictly protected areas had higher productivity and considerable resilience to low levels of precipitation, when compared to sustainable use or unprotected areas. These results highlight the importance of protected areas in protecting ecosystem processes and native vegetation in the Caatinga against the negative effects of climate change and deforestation. Given the extremely small area of the Caatinga currently under strict protection, the creation of new conservation areas must be a priority to ensure the sustainability of ecological processes and to avoid further desertification.
Data from: Solidago altissima differs with respect to ploidy frequency and clinal variation across the prairie-forest biome border in Minnesota
PREMISE OF THE STUDY: Although our awareness of ploidy diversity has expanded with the application of flow cytometry, we still know little about the extent to which cytotypes within mixed-ploidy populations are genetically differentiated across environmental gradients. METHODS: To address this issue, we reared 14 populations of Solidago altissima spanning the prairie–forest ecotone in Minnesota in a common garden with a watering treatment. We assessed ploidy frequencies and measured survival, flowering phenology, and plant architectural traits for 4 years. KEY RESULTS: All populations harbored multiple cytotypes; prairie populations were dominated by tetraploids, forest populations by hexaploids. Diploids and polyploids differed significantly for 84% of the traits. Beyond average differences, the slope of trait values covaried with latitude and longitude, but this relationship was stronger for diploids than the other two polyploid cytotypes as indicated by numerous ploidy × latitude and ploidy × longitude interactions. For example, the timing of flowering of the cytotypes overlapped in populations sampled from the northeastern hemiboreal forest but differed significantly between cytotypes sampled from populations in the southwestern prairie. The watering treatments had weak effects, and there were no ploidy differences for phenotypic plasticity. CONCLUSIONS: Our data show that diploids have diverged genetically to a greater extent than polyploids along the environmental clines sampled in this study. Moreover, different environments favor phenotypic convergence over divergence among cytotypes for some traits. Differences in ploidy frequency and phenotypic divergence among cytotypes across gradients of temperature and precipitation are important considerations for restoration in an age of climate change.
Data from: Seasonal variation in foraging group size of crab-eating foxes and hoary foxes in the Cerrado biome, Central Brazil
In regions with a pronounced dry season, such as the Cerrado Biome (Brazilian savannah), climate seasonality may affect food availability for canid species and, consequently, their foraging behavior. We investigated seasonal variation in foraging group size of crab-eating foxes (Cerdocyon thous) and hoary foxes (Pseudalopex vetulus) in the Cerrado region for three consecutive years. Data were obtained by direct observations of foraging foxes during spotlight surveys. Both species were sighted foraging individually or in pairs with or without their juvenile offspring. However, crab-eating foxes foraged in pairs more frequently in the wet season and individually more frequently in the dry season whereas hoary foxes foraged mostly individually throughout the year. The higher frequency of solitary foragers in the dry season is possibly a response to the seasonal shortages in the availability of clumped and locally abundant food resources such as fruit and insects, important items in the diet of the crab-eating fox during the wet season. The absence of seasonal variation in foraging group size of the hoary fox may be related to its specialized food habits, since termites predominate in the diet of this species in both seasons.
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.