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2,555 results for “catalogs”
Linked collectors and determiners for: Catalog of the Chrysomelinae (Coleoptera: Chrysomelidae) deposited in the entomological collections of the Museu Paraense Emílio Goeldi (MPEG) and the Universidade do Estado do Pará (UEPA), Belém, Brazil.
Natural history specimen data linked to collectors and determiners held within, "Catalog of the Chrysomelinae (Coleoptera: Chrysomelidae) deposited in the entomological collections of the Museu Paraense Emílio Goeldi (MPEG) and the Universidade do Estado do Pará (UEPA), Belém, Brazil". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/05c9eba1-7cf5-4372-b482-846b28104833">https://bionomia.net/dataset/05c9eba1-7cf5-4372-b482-846b28104833</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/05c9eba1-7cf5-4372-b482-846b28104833">https://gbif.org/dataset/05c9eba1-7cf5-4372-b482-846b28104833</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Updating the knowledge of the flower flies (Diptera: Syrphidae) from Chile: Illustrated catalog, extinction risk and biological notes.
Natural history specimen data linked to collectors and determiners held within, "Updating the knowledge of the flower flies (Diptera: Syrphidae) from Chile: Illustrated catalog, extinction risk and biological notes". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/e9fcfa2b-72cd-4826-a7e5-c33cd37bf00e">https://bionomia.net/dataset/e9fcfa2b-72cd-4826-a7e5-c33cd37bf00e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/e9fcfa2b-72cd-4826-a7e5-c33cd37bf00e">https://gbif.org/dataset/e9fcfa2b-72cd-4826-a7e5-c33cd37bf00e</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Penthetria Meigen (Diptera: Bibionidae): Revision of the New World species and world catalog.
Natural history specimen data linked to collectors and determiners held within, "Penthetria Meigen (Diptera: Bibionidae): Revision of the New World species and world catalog". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/f0b1c09e-298d-497d-b6de-cd74367c983e">https://bionomia.net/dataset/f0b1c09e-298d-497d-b6de-cd74367c983e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/f0b1c09e-298d-497d-b6de-cd74367c983e">https://gbif.org/dataset/f0b1c09e-298d-497d-b6de-cd74367c983e</a>. Formatted as a Frictionless Data package.
Linked collectors and determiners for: Catalog of the Opilioacarida (Acari: Parasitiformes).
Natural history specimen data linked to collectors and determiners held within, "Catalog of the Opilioacarida (Acari: Parasitiformes)". Claims or attributions were made on Bionomia by volunteer Scribes, <a href="https://bionomia.net/dataset/d2e6cfb5-f377-411b-b1be-5b3bb4135c9e">https://bionomia.net/dataset/d2e6cfb5-f377-411b-b1be-5b3bb4135c9e</a> using specimen data from the dataset aggregated by the Global Biodiversity Information Facility, <a href="https://gbif.org/dataset/d2e6cfb5-f377-411b-b1be-5b3bb4135c9e">https://gbif.org/dataset/d2e6cfb5-f377-411b-b1be-5b3bb4135c9e</a>. Formatted as a Frictionless Data package.
FIG. 20 in Illustrated Catalog of African brush-footed trapdoor spiders: type specimens from the Royal Museum for Central Africa (Araneae, Mygalomorphae, Barychelidae)
FIG. 20. — Sipalolasma humicola (Benoit, 1965): A-D, holotype, ♀ (BE_RMCA_ARA.Ara.127614): A, habitus dorsal; B, idem, ventral; C, labium and maxillae, ventral view; D, eye tubercle, dorsal view. Scale bars: A, B, 2 mm; C, D, 1 mm.
FIG. 19 in Illustrated Catalog of African brush-footed trapdoor spiders: type specimens from the Royal Museum for Central Africa (Araneae, Mygalomorphae, Barychelidae)
FIG. 19. — Pisenor upembanus (Roewer, 1953): A-D, paratype, ♀ (BE_RMCA_ARA.Ara.139809): A, habitus dorsal; B, idem, ventral; C, spermatheca, dorsal view; D, eye tubercle, dorsal view. Scale bars: A, B, 2 mm; C, 0.5 mm; D, 1 mm.
Merging metabolomics and genomics provides a catalog of genetic factors that infuence molecular phenotypes in pigs linking relevant metabolic pathways
<h3>Content</h3> <p>Metabolites included in the study. Summary statistics of metabolite levels for the Large White and Duroc pig populations are provided.</p>
Standardized Competency Catalog used at TUM
The standardized competency catalog used at TUM
Testing nauyaca: mock catalog and results
<p>Dataset associated with the paper "Nauyaca: a new tool to determine planetary masses and orbital elements through transit timing analysis". It includes the mock catalog of planetary systems and the results of the optimization and MCMC routines.</p>
Figs. 9–16 in The state of Sphaeroceridae (Diptera: Acalyptratae): a world catalog update covering the years 2000-2010, with new generic synonymy, new combinations, and new distributions
Figs. 9–16. Sphaerocerinae (9–12) and Limosininae (13–26): 9 – Ischiolepta pusilla (Fallén, 1820), male (Russia, 1.7 mm); 10 – Ischiolepta crenata (Meigen, 1838), female (Denmark, 3.5 mm); 11 – Lotobia sp., male (Tanzania, 3 mm); 12 – Parasphaerocera sp., female (Costa Rica, 3 mm); 13 – Anatalanta crozetensis Enderlein, 1908, male (Crozet Archipelago, 4 mm); 14 – Anomioptera picta Schiner, 1868, female (Venezuela, 3 mm); 15 – Aptilotella sp., female (Costa Rica, 1.1 mm); 16 – Archileptocera lutea Marshall, 1998, male (Ecuador, 2.5 mm). Photos by D. Gavryushin (Fig. 9), R. Ahlburg (Fig. 10), S. A. Marshall (Figs. 11, 12, 15) and D. K. B. Cheung (Figs. 13, 14, 16).
Figs. 1–8 in The state of Sphaeroceridae (Diptera: Acalyptratae): a world catalog update covering the years 2000-2010, with new generic synonymy, new combinations, and new distributions
Figs. 1–8. Copromyzinae: 1 – Archiborborus annulatus Richards, 1963, female (Chile, 2.5 mm), 2 – Crumomyia notabilis (Collin, 1902), male with fungus Stigmatomyces burdigalensis on legs (Denmark, 4 mm), 3 – Copromyza nigrina (Gimmerthal, 1847), male (Denmark, 4 mm); 4 – Crumomyia pedestris (Meigen, 1830), female (Russia, 3.3 mm), 5 – Gymnometopina sp., male (South Africa, 3 mm), 6 – Lotophila atra (Meigen, 1830), male (Russia, 3 mm), 7 – Norrbomia frigipennis (Spuler, 1925), female (USA: Florida, 3 mm), 8 – Palaeoceroptera clefta Marshall, 1998, female (Argentina, 2 mm). Photos by S. A. Marshall (Fig. 1), R. Ahlburg (Figs. 2–3), D. Gavryushin (Figs. 4, 6) and D. K. B. Cheung (Figs. 5, 7, 8).
Figs. 17–24 in The state of Sphaeroceridae (Diptera: Acalyptratae): a world catalog update covering the years 2000-2010, with new generic synonymy, new combinations, and new distributions
Figs. 17–24. Limosininae: 17 – Ceroptera longicauda Marshall, 1988, female (USA: Florida, 2.5 mm); 18 – Chaetopodella scutellaris (Haliday, 1836), female (Russia, 1.7 mm); 19 – Coproica lugubris (Haliday, 1836), female (Russia, 1.4 mm); 20 – Eulimosina ochripes (Meigen, 1830), male (Canada, 2 mm); 21 – Giraffimyiella giraffa (Richards, 1938), female (Tanzania, 2.5 mm); 22 – Gyretria biseta (Duda, 1925), male (Chile, 2.3 mm); 23 – Leptocera fontinalis (Fallén, 1820), female (Russia, 3 mm); 24 – Leptocera hexadike Buck, 2009, male (Costa Rica, 2.5 mm). Photos by D. K. B. Cheung (Figs. 17, 22), D. Gavryushin (Figs. 18, 19, 23) and S. A. Marshall (Figs. 20, 21, 24).
Figs. 25–32 in The state of Sphaeroceridae (Diptera: Acalyptratae): a world catalog update covering the years 2000-2010, with new generic synonymy, new combinations, and new distributions
Figs. 25–32. Limosininae: 25 – Myrmolimosina andersoni Marshall, 2000, male (Mexico, 2.4 mm); 26 – Phthitia selkirki (Enderlein, 1938), male (Chile: Juan Fernández Is., 2.3 mm); 27 – Poecilosomella angulata (Thomson, 1869), male (Cuba, 2.9 mm); 28 – Pseudocollinella humida (Haliday, 1836), female (Russia, 2.4 mm); 29 – Pterogramma sp., sex unknown (Costa Rica, 1.5 mm); 30 – Rachispoda lutosa (Stenhammar, 1855), female (Russia, 3 mm); 31 – Robustagramma disjunctum Marshall & Cui, 2005, male (Costa Rica, 1.8 mm); 32 – Sclerocoelus caribensis Marshall, 1997, male (Costa Rica, 2.1 mm). Photos by D. K. B. Cheung (Figs 25, 26, 31, 32), S. A. Marshall (Figs. 27, 29) and D. Gavryushin (Figs. 28, 30).
TEICatalogs: Corpus of encoded 19th and 20th catalogs
<p>This release contains six XML-TEI exhibition catalogs encoded using the <a href="https://zenodo.org/record/5464146#.YTXXrI5KjIU">Open Source Pipeline</a> created for <a href="https://artlas.huma-num.fr/fr/">Artl@s.</a></p>
Subaru/HSC Goldrush catalog
<p>Dropout galaxy catalogs (ver20210826) constructed in Harikane et al. (2021).</p> <p>The directory contains two types of the catalogs, "all_[gri/riz/izy/zy]_[Region_name].cat", and "masked_[gri/riz/izy/zy]_[Region_name].cat". The "all_" catalogs contain all sources that satisfy our selection criteria, and the "masked_" catalogs contain sources after some masking adopted by Y. Harikane. Scientific analyses in Harikane et al. (2021) are based on the "masked_" catalogs.</p> <p>The header in each catalog describes entries of columns.</p> <p>If you have any questions, please send an email to rush@icrr.u-tokyo.ac.jp or hari@icrr.u-tokyo.ac.jp.</p>
Southern Alps, New Zealand microseismicity earthquake catalog
<p>Earthquake catalog of the microseismicity in the central Alpine Fault, New Zealand (2008 - 2017) in QuakeML format. The information included for each event contains location, phase pick, local magnitude information. For more details refer to the Gcubed publication in the related <a href="http://doi.org/10.1029/2018GC007743">link</a>.</p> <p> </p>
Earthquake catalog in QuakeML format from: "Spatio-Temporal Evolution of Intermediate-Depth Seismicity Beneath the Himalayas: Implications for Metamorphism and Tectonics"
<p>Earthquake catalog of the intermediate-depth seismicity beneath the central Himalayas in QuakeML format. The information included for each event contains location, phase pick, local magnitude information. For more details refer to the Frontiers publication:<a href="https://doi.org/10.3389/feart.2021.742700"> Michailos et al., 2021</a></p>
RSQSim Simulated Earthquake Catalog 5091, New Zealand, NSHM2012 Fault System, 276kyr
<p>Earthquake simulator for New Zealand</p> <p>Simulated earthquake catalog, generated with the Rate-State Earthquake Simulator (RSQSim), described in and used by the following publication:</p> <p>Bruce E. Shaw, Bill Fry, Andrew Nicol, Andrew Howell, and Matthew Gerstenberger, An Earthquake Simulator for New Zealand, <em>submitted</em>, 2021.</p> <p>A github repository with python tools to interact with this catalog, and other similar rsqsim catalogs, is located at:</p> <p><a href="https://github.com/uc-eqgeo/rsqsim-python-tools">https://github.com/uc-eqgeo/rsqsim-python-tools</a></p> <p>This repository is intended to continue to be improved and updated .</p> <p> </p> <p>Additional references discussing the simulator and its uses:</p> <p>Kevin R. Milner, Bruce E. Shaw, Christine A. Goulet, Keith B. Richards‐Dinger, Scott Callaghan, Thomas H. Jordan, James H. Dieterich, Edward H. Field; Toward Physics‐Based Nonergodic PSHA: A Prototype Fully Deterministic Seismic Hazard Model for Southern California. <em><em>Bulletin of the Seismological Society of America</em></em> 2021;; 111 (2): 898–915. doi: <a href="https://doi.org/10.1785/0120200216">https://doi.org/10.1785/0120200216</a></p> <p>Bruce E. Shaw, Kevin R. Milner, Edward H. Field; Keith B. Richards‐Dinger, Jacquelyn J. Gilchrist, James H. Dieterich, and Thomas H. Jordan, 'A physics-based earthquake simulator replicates seismic hazard statistics across California',<em> Science Advances, 4</em>, 2018. <a href="https://www.ldeo.columbia.edu/%7Eshaw/publications/ShawEtal18.pdf">doi:10.1126/sciadv.aau0688</a></p> <p>The catalog is simulated on a fault system for New Zealand built from source in the NSHM2021 national hazard model, following the hybrid loading technique described in Shaw (2019) (<a href="https://doi.org/10.1785/0120180128">https://doi.org/10.1785/0120180128</a>).</p> <p> </p> <p><strong>File Descriptions:</strong></p> <p>The descriptions below are for some of the more relevant files. There are additional files as well. The python tools in the github repository interact with additional files not mentioned here. </p> <p><strong>Catalog CSV File:</strong> <em>catalog.csv</em></p> <p>This is a human-readable summary file listing each event (after<br> skipping the first 50kyrs of model spin-up time).<br> Each line corresponds to an event in the catalog, and contains the<br> following information:</p> <p> * Event ID and occurrence time<br> * Magnitude, Moment, and Area<br> * Participating element information (count, average slip, long-term<br> average slip rate)<br> * Hypocenter and scalar-moment centroid locations<br> * Rupture surface minimum and maximum depths</p> <p><strong>Geometry File (ASCII): </strong><em>zfault_Deepen.in</em></p> <p>ASCII file listing patch (triangular) geometry for the simulated faults<br> in a UTM coordinate system (zone 11S). The primary columns are:</p> <p> * /x1, y1, z1/ - UTM coordinates of the first vertex<br> * /x2, y2, z2/ - UTM coordinates of the second vertex<br> * /x3, y3, z3/ - UTM coordinates of the third vertex<br> * /rake/ - Direction of the motion of the hanging wall relative to the<br> footwall (in degrees, following the convention of Aki & Richards, 2002)<br> * /slip_rate/ - Long-term average slip rate (in m/s)</p> <p>The first line in the file (excluding comment lines that start with '#')<br> is the patch with ID=1, the second ID=2, etc. Additional metadata<br> columns may exist in each line beyond those listed and can be ignored.</p> <p><strong>Catalog List Files (binary):</strong> <em>catalog.eList, catalog.pList,<br> catalog.tList, catalog.dList</em></p> <p>The raw output of RSQSim includes 4 binary "list" files that define the<br> simulated event IDs, times, and total slip in each participating patch.<br> All 4 list files should be processed together, as the /N/-th item in one<br> list file corresponds to the /N/-th item in each other file.</p> <p>For each patch the ruptures during an event, a value is written to each<br> of these files giving 1) the patch number, 2) the event number, 3) the<br> distance slipped during the event, and 4) the time of first rupture for<br> that patch during that event.</p> <p>The format is as follows:</p> <p> * catalog.eList: list of event IDs (1-based), stored as little-endian<br> 4-byte integers<br> * catalog.pList: list of patch IDs (1-based), stored as little-endian<br> 4-byte integers<br> * catalog.tList: list of time of first slip on each patch in each<br> event (in seconds, relative to simulation origin time), stored as<br> little-endian 8-byte double precision floating-point numbers<br> * catalog.dList: list of total slip on each patch in each event (in<br> meters), stored as little-endian 8-byte double precision<br> floating-point numbers</p> <p><strong>RSQSim Input File (ASCII):</strong> <em>multiparam.in</em></p> <p>Key-value pairs of RSQSim model parameters, used to originally run the<br> simulation.</p> <p> </p> <p> </p> <p> </p> <p> </p>
Catalog of metagenome-assembled bacterial genomes from Antarctic endolithic communities
<p>The dataset consists of 2 rar archives and 2 files ( tab-separated values ). Here is a brief summary of their contents:</p> <ul> <li><strong>MAGs_taxonomy: </strong>GTDB classification for each MAG.</li> <li><strong>MAGs_genome_info: </strong>genome size, completeness, contamination, length, N50.</li> <li><strong>MAGs - candidate species: </strong>high quality (HQ) and medium quality (MQ) bacterial metagenome assembled genomes.</li> <li><strong>MAGs_Annotation: </strong>EggNOG annotation files. For each MAG, the following files are included: <ul> <li>eggnog.emapper.annotations: the final EggNOG annotation;</li> <li>eggnog.emapper.hmm_hits: list of significant hits to eggNOG Orthologous Groups</li> <li>eggnog.emapper.seed_orthologs: best match of each query within the best Orthologous Group (OG) reported in the eggnog.emapper.hmm_hits file<strong>.</strong></li> </ul> </li> </ul>
Data for: PerchPicker classifier model v7: A catalog of American silver perch (Bairdiella chrysoura) calls for machine learning
<p>This data repository contains labeled passive underwater acoustic data used to train and test the machine-learning model of Bohnenstiehl (in prep - 2023), <em>Automated cataloging of American silver perch (Bairdiella chrysoura) calls using machine learning</em>. The software accompanying this paper is known as PerchPicker (<a href="https://github.com/drbohnen/PerchPicker" rel="noopener">GitHub - drbohnen/PerchPicker)</a>, and the classifier model presented in the paper is v7. It consists of more than 6000 labeled perch and 6000 labeled other signals. Labeled scalogram images are provided, along with pressure-corrected waveforms (micro-Pascals) sampled at 24 kHz. Each waveform sample is 90 ms long. The center 30 ms of these waveform segments represent the portion of the signal used in training and testing the classifier model. Waveform data are provided in multiple formats: 1) MATLAB (.mat) files containing the 'perch' and 'other' waveforms stored in column format, and 2) individual .wav files, each containing a labeled waveform example. Codes are provided to demonstrate how these .wav files can be read into MATLAB and PYTHON. These labeled data can be used to re-train the PerchPicker model or develop alternative classifiers. </p>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.