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Fig. 8 in Palaeobiology and evolutionary context of Angulithes mermeti, a streamlined early Late Cretaceous shallow-water nautiloid

Fig. 8. Westermann morphospace diagram, simplified and modified after Ritterbush et al. (2014), with placement of the hercoglossid nautiloid Angulithes mermeti (Coquand, 1862) (see Table 2 for raw data; black circle indicates mean value); for comparison, two specimens of Nautilus pompilius Linnaeus, 1758 are plotted in the diagram, too (1, specimen 17 of Tajika et al. 2015; 2, an early Pleistocene specimen from Wani et al. 2008).Abbreviations: Th, shell inflation; U, umbilical exposure; w, whorl expansion.

Fig. 5 in Palaeobiology and evolutionary context of Angulithes mermeti, a streamlined early Late Cretaceous shallow-water nautiloid

Fig. 5. Cross-sections and external sutures of the hercoglossid nautiloid Angulithes mermeti (Coquand, 1862) from the Cenomanian of Wadi Ghonima, Egypt. A. AFK 225, shell shape in apertural view (A1), external sutures (A2); grey shading indicates position of the umbilical saddle. B. AFK 202, shell shape in ventral view. C. AFK 218, whorl shape, showing the position of the siphuncle.

Fig. 10 in Palaeobiology and evolutionary context of Angulithes mermeti, a streamlined early Late Cretaceous shallow-water nautiloid

Fig. 10. Palaeoecology of the hercoglossid nautiloid Angulithes mermeti (Coquand, 1862). A. Reconstruction of A. mermeti (Coquand, 1862) in the lagoonal shallow-water environment of the Galala Formation (background after a subaqueous photograph in the property of MW from a lagoonal site in the present-day Red Sea near Hughhada taken in 1999, treated by greyscale-filtering in Photoshop CS2); rudist illustrations from Mitchell (2002). B. Bioclastic rudist (r) floatstone, the lagoonal host sediment in which A. mermeti has been found in the Wadi Ghonima section (thin-section photomicrograph of sample 080217-18). C. Close-up of Fig. 9B showing the bioclastic packstone matrix in detail, including numerous fragments of dasycladalean algae (gr).

Fig. 7 in Palaeobiology and evolutionary context of Angulithes mermeti, a streamlined early Late Cretaceous shallow-water nautiloid

Fig. 7. Palaeobiogeographical distribution of the hercoglossid nautiloid Angulithes mermeti (Coquand, 1862). Cenomanian palaeogeographical and plate tectonic situation modified after Barrier and Vrielynck (2008); nautiloid occurrences are indicated by asterisks (see text for literature sources). Abbreviations: APB, Anglo-Paris Basin; MEI, Mid-European Island,

Fig. 5. Specimen NGS−F−V−258 in New evidence on the taphonomic context of the Ediacaran Pteridinium

Fig. 5. Specimen NGS−F−V−258 collected on Farm Aar. Multiple membrane−like surfaces are visible. These are interpreted as flexible organic structures, see discussion for more information.

Fig. 7 in New evidence on the taphonomic context of the Ediacaran Pteridinium

Fig. 7. Membrane−like structures preserved in association with Pteridinium fossils. A. Block number NGS−F−V−172, note the pattern resembling a repeated series of segments around the outer edge of the specimen (towards the top of the photograph). B. A membrane−like structure on block NGS−F−V−166, note the larger structures resembling Pteridinium segments in the upper left of the figure.

Fig. 4. A in New evidence on the taphonomic context of the Ediacaran Pteridinium

Fig. 4. A. Side view of a section bearing dish structures. The top of the bed is toward the top of the photograph. B. Pteridinium fossil embedded within dish structures, indicating that Pteridinium fossils formed a component of consolidating sediment, underlying rapidly deposited beds. Both from the top of the Lower Kliphoek on Farm Aar (see Figs. 1 and 2).

Fig. 6 in New evidence on the taphonomic context of the Ediacaran Pteridinium

Fig. 6. Membrane−like structures preserved in association with Pteridinium fossils. Block number NGS−F−V−174. A. Specimen showing the membrane−like surfaces running parallel to a Pteridinium specimen. B. Map of features. Compare to A and C; note the non−lineated membrane−like surface immediately adjacent to the surface bearing fine parallel lineations. C. The same specimen rotated to focus on the membrane−like structure. Note the consistency of lineations.

Fig. 3 in New evidence on the taphonomic context of the Ediacaran Pteridinium

Fig. 3. Bed of Pteridinium fossils underlain by a scour−and−fill structure. Lamina− tions are visible in the underlying sediment, cross−cut by the material containing Pteridinium fossils. From the top of the Lower Kliphoek on Farm Aar (see Figs. 1 and 2).

Fig. 2 in New evidence on the taphonomic context of the Ediacaran Pteridinium

Fig. 2. Generalised stratigraphic section of the Nama Group south of Osis (left) and the uppermost part of the Kliphoek Member on Farm Aar (right). Dates refer to U−Pb zircon dates of ash beds, after Saylor et al. (1998). † U−Pb zircon date from an ash bed in the early Cambrian Nomtsas Formation (Grotzinger et al. 1995), which cuts unconformably into limestone of the upper Schwarzrand subgroup. ‡ U−Pb zircon date from an ash bed in the Hoogland Member of the Kuibis Subgroup, which outcrops north of Osis (Grotzinger et al. 1995). Trends in δ13C suggest that this postdates deposition in the Kuibis Subgroup south of Osis (Saylor et al. 2005).

Fig. 6 in Role of landscape context in Toxoplasma gondii infection of invasive definitive and intermediate hosts on a World Heritage Island

Fig. 6. Relative density of black rats in different land-use types, as expressed by the capture rate by traps, i.e., number of individuals captured per 100 trapdays. Numerals above the bars indicate total trap-days.

Fig. 5 in Role of landscape context in Toxoplasma gondii infection of invasive definitive and intermediate hosts on a World Heritage Island

Fig. 5. Anti-Toxoplasma gondii seroprevalence and OD values of black rats as a function of the number of cattle barns within 1 ha or individual body weight. Gray areas indicate 95% confidence intervals. Dots represent individuals. The color becomes darker with increasing sample size.

Fig. 4 in Role of landscape context in Toxoplasma gondii infection of invasive definitive and intermediate hosts on a World Heritage Island

Fig. 4. Model averaged coefficients of variables (GLM) explaining seroprevalence and OD values of black rats. Bars indicate 95% confidence intervals.

Fig. 2 in Role of landscape context in Toxoplasma gondii infection of invasive definitive and intermediate hosts on a World Heritage Island

Fig. 2. Model averaged coefficients of variables (GLM) explaining seroprevalence and OD values of cats. Bars indicate 95% confidence intervals.

Fig. 3 in Role of landscape context in Toxoplasma gondii infection of invasive definitive and intermediate hosts on a World Heritage Island

Fig. 3. Anti-Toxoplasma gondii seroprevalence and OD values of cats as a function of the number of cattle barns within 1 ha or individual body weight. Gray areas indicate 95% confidence intervals. Dots represent individuals. The color becomes darker with increasing sample size.

Fig. 1 in Role of landscape context in Toxoplasma gondii infection of invasive definitive and intermediate hosts on a World Heritage Island

Fig. 1. Map showing the study area. Open circles and black triangles in the map indicate, respectively, capture sites of cats and black rats.

opencc-by-4.0Aug 2024View details →

The mOTUs online database provides web-accessible genomic context to taxonomic profiling of microbial communities - Supplementary Tables

Supplementary Table 1: A map between each of the genomes in mOTUs-db (3’747’151), the associated study and its metagenomic sample (in case of MAGs). Columns: <code>    GENOME             → Unique mOTUs-db name of the genome</code> <code>    STUDY              → Unique mOTUs-db name of the study</code> <code>    IS_MAG             → True if genome is a MAG, otherwise False </code> <code>    METAGENOMIC_SAMPLE → Unique name of the metagenomic sample or NA in case of non-MAG genome</code> Example: <code>    GENOME                                     STUDY        IS_MAG    METAGENOMIC_SAMPLE</code> <code>    ---------------------------------------------------------------------------------------------</code> <code>    ACIN21-1_SAMN05421555_MAG_00000001         ACIN21-1     True      ACIN21-1_SAMN05421555_METAG</code> <code>    RSGB23-1_GCA-006096615-V1_GENO_10000001    RSGB23-1     False     NA</code> Supplementary Table 2: A map between all non-MAG genomes (919’090) and their source (e.g. Refseq or JGI). Columns: <code>    GENOME             → Unique mOTUs-db name of the genome</code> <code>    SOURCE_SAMPLE_LINK → Link to the original location of this genome</code> Example: <code>    #GENOME                                     SOURCE_SAMPLE_LINK</code> <code>    --------------------------------------------------------------------------------------------------------</code> <code>    JGIG23-1_GA0055041_GENO_10000001            https://gold.jgi.doe.gov/analysis_project?id=Ga0055041</code> <code>    RSGB23-1_GCA-006717865-V1_GENO_10000001     https://www.ncbi.nlm.nih.gov/datasets/genome/GCA_006717865.1</code> Supplementary Table 3: A list of all metagenomic studies processed for the mOTUs-db, their number of samples, the number of reconstructed MAGs and the associated publication. Columns: <code>    STUDY       --> Unique mOTUs-db study identifier</code> <code>    BIOPROJECT  --> Public identifier (NCBI/JGI) of metagenomic sequencing project</code> <code>    SAMPLES     --> Number of metagenomic samples</code> <code>    MAGs        --> Number of reconstructed MAGs</code> <code>    PUBLICATION --> Link to publication</code> Example: <code>    STUDY        BIOPROJECT    SAMPLES    MAGs     PUBLICATION</code> <code>    -------------------------------------------------------------------------------------------------</code> <code>    ACIN21-1     PRJEB44456    58         1,110    https://www.nature.com/articles/s42003-021-02112-2</code> Supplementary Table 4: Mapping between mOTUs-db sample identifier, the associated biosample and the environment. Columns: <code>    SAMPLE             --> Unique mOTUS-db sample identifier</code> <code>    BIOSAMPLE          --> Public identifier (NCBI/JGI) of metagenomic sample</code> <code>    STUDY              --> Unique mOTUs-db study identifier</code> <code>    ENVIRONMENT        --> Environment of metagenomic sample</code> <code>    SOURCE_SAMPLE_LINK --> Link to the original location of this sample</code> Example: <code>    #SAMPLE                      BIOSAMPLE     STUDY    ENVIRONMENT  SOURCE_SAMPLE_LINK</code> <code>    ---------------------------------------------------------------------------------------------------------------------</code> <code>    ACIN21-1_SAMN05421555_METAG  SAMN05421555  ACIN21-1 marine       https://www.ncbi.nlm.nih.gov/biosample/SAMN05421555/</code> Supplementary Table 5: A list of environments covered in the mOTUs-db mapped to the respective NCBI taxonomy (if possible) Columns: <code>    TERM             --> Unique environment name</code> <code>    NCBI TAXONOMY ID --> Link to the NCBI taxonomy</code> Example: <code>    TERM                          NCBI TAXONOMY ID</code> <code>    ----------------------------------------------</code> <code>    activated sludge metagenome   NCBI:txid942017</code> <code>    air metagenome                NCBI:txid655179</code>

opencc-by-4.0Feb 2017View details →

FIGURE 14 in Large mammals (carnivores, artiodactyls) from Solna Jama Cave (Bystrzyckie Mts, Southwestern Poland) in the context of faunal changes in the postglacial period of Central Europe

FIGURE 14. Scatter diagram showing the ratio of total length to proximal epiphysis breadth in late pleistocene-holocene Capreolus capreolus phalanx II. Middle Pleistocene locality: Kozi Grzbiet and Miesenheim 1. Late middle and late Pleistocene locality: Weimar Ehringsdorf, Biśnik Cave, Chlupáč Cave and Deszczowa Cave. Postglacial and Holocene locality: Biśnik Cave (uppermost layers), Jasna Strzegowska Cave and Poland in general. Data from Stefaniak (2015) and references therein.

opencc-by-4.0Feb 2017View details →

FIGURE 13 in Large mammals (carnivores, artiodactyls) from Solna Jama Cave (Bystrzyckie Mts, Southwestern Poland) in the context of faunal changes in the postglacial period of Central Europe

FIGURE 13. Scatter diagram showing the ratio of lower carnassial (m1) length (Lm1) and breadth (B m1) in late Pleistocene and Recent Mustela nivalis from Poland. The Solna Jama Cave specimen displays a moderately large size, with the length of m1 less than 4 mm, typical of the late Pleistocene and postglacial period.