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244
datasets available to search
ShareScore release 0.9.0
Dataset results
244 results for “genomic variants”
Genome-wide enhancer-gene regulatory maps link causal variants to target genes underlying human colorectal cancer risk [ATAC-seq]
GEO Series GSE222766. Homo sapiens. 10 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of chromatin state (centromeric histone H3 variant CENP-A/Cnp1) in the meiotic progeny from the genetic crossing of mhf2∆ (cen1_inactive) × clr4∆ (cen1_active).
GEO Series GSE117960. Schizosaccharomyces pombe. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of chromatin state centromeric histone H3 variant CENP-A/Cnp1 in the meiotic progeny from the genetic crossings of mhf2+ (cen1_inactive) × mhf2+ (cen1_active) and mhf2∆ (cen1_inactive
GEO Series GSE131224. Schizosaccharomyces pombe. 22 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of chromatin state (heterochromatin H3K9me2 or centromeric histone H3 variant CENP-A/Cnp1) in both mhf2∆ and mhf2+ carrying the inactivated Centromere 1 or Centromere 2.
GEO Series GSE117955. Schizosaccharomyces pombe. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide copy number variant analysis in inbred lines of chickens with different susceptibility to Marek’s disease
GEO Series GSE38689. Gallus gallus. 6 samples. Type: Genome variation profiling by genome tiling array.
Contribution of variant subunits and associated factors to genome-wide distribution and dynamics of cohesin [ChIP-seq]
GEO Series GSE212150. Mus musculus. 34 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide enhancer maps link disease variants to genes and cell types
GEO Series GSE155555. Homo sapiens. 67 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Detection of 5mC in DNA templates generated by PCR and HeLa human genomic DNA by linear PCR using KTq DNA polymerase variants
GEO Series GSE233599. synthetic construct; Homo sapiens. 18 samples. Type: Other.
Histone variant H3.3-mediated chromatin remodeling is essential for paternal genome activation in mouse preimplantation embryos
GEO Series GSE108769. Mus musculus. 3 samples. Type: Expression profiling by high throughput sequencing.
Proteogenomics analysis reveals specific genomic orientations at distal regulatory regions composed by non-canonical histone variants
GEO Series GSE64652. Homo sapiens. 4 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Histone variant H2A.Z regulates zygotic genome activation
GEO Series GSE161594. Drosophila melanogaster. 73 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other.
DeepWheat: Predicting the Effects of Genomic Variants on Gene Expression and Regulatory Activities Across Tissues and Varieties in Wheat Using Deep Learning [ChIP-Seq]
GEO Series GSE289179. Triticum aestivum. 5 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Functional DNA methylation signatures for genomic loci that confer an increased risk for autism spectrum disorder: 16p11.2 deletions and CHD8 variants
GEO Series GSE113967. Homo sapiens. 134 samples. Type: Methylation profiling by genome tiling array.
DeepWheat: Predicting the Effects of Genomic Variants on Gene Expression and Regulatory Activities Across Tissues and Varieties in Wheat Using Deep Learning [ATAC-seq]
GEO Series GSE287695. Triticum aestivum. 9 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of Cbfb variants bound regions in E12.5 lineage negative fetal liver cells and adult thymocytes.
GEO Series GSE90794. Mus musculus. 6 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genome-wide maps of histone H3 variant CENP-A/Cnp1 in the meiotic haploid progeny of wip1∆/+, mhf1∆/+ and mhf2∆/+ and genome-wide maps of histone H3 variant CENP-A/Cnp1 in mhf2+ (or mhf2∆) carrying th
GEO Series GSE131223. Schizosaccharomyces pombe. 7 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
De Novo Assembly of Plasmodium knowlesi Genomes From Clinical Samples Explains the Counterintuitive Intrachromosomal Organization of Variant SICAvar and kir Multiple Gene Family Members
<p>Published DOI: <a href="https://doi.org/10.3389/fgene.2022.855052">https://doi.org/10.3389/fgene.2022.855052</a></p> <p>Supporting data for the attached publication. De Novo assembled genomes of <em>Plasmodium knowlesi</em> generated using Nanopore long reads. Supporting statistical results are included. Variant call files from structural variant calls are attached for each genome. Additionally, statistical results from BUSCO, QUAST, Pomoxis and AGAT are included. Annotation files in GFF3 format including further analyses of these annotation files are attached. Scripts for post analysis are attached with scripts for data generation presented on Github repository: "Pknowlesi_denovo_genome_assembly"</p>
Integrative analysis of genomic structural variants in human leukemia
GEO Series GSE199701. Homo sapiens. 119 samples. Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing.
Genome-wide analysis of full-length Androgen Receptor (AR) and AR Splice Variant (ARv567es) cistromes
GEO Series GSE61838. Homo sapiens. 11 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
Genomics of medulloblastoma identifies four distinct molecular variants
GEO Series GSE21140. Homo sapiens. 103 samples. Type: Expression profiling by array.
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.