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242 results for “occupancy data”
Data from: Direct and indirect effects of pine silviculture on the larval occupancy and breeding of declining amphibian species
1. Plantation silviculture is increasing globally and is particularly intensive in temperate coniferous forests, where densely planting trees requires practices common to non-conifer systems that can alter forest floor microhabitat, and potentially threaten amphibian persistence. Most declining amphibian species depend on specific forest microhabitats as terrestrial refugia, but amphibian extirpation associated with tree harvest alone appears unlikely, suggesting that impacts of planting forests on groundcover might better predict recent declines in amphibian occupancy. 2. We repeatedly sampled larval presence or absence of 10 amphibian species native to temperate coniferous forest in the Southeastern United States for one year at 62 isolated wetlands located in either naturally regenerating or planted forest (plantation) to assess three direct ways that planted forests might reduce amphibian breeding site occupancy by: 1) increasing conifer densities, 2) decreasing groundcover, and 3) an indirect pathway, whereby increased tree densities at plantations might reduce groundcover and thus amphibian site occupancy. 3. After controlling for wetland traits and accounting for differences in detection, breeding site occupancy for 8/10 amphibian species was dependent upon whether forests were planted surrounding wetlands (within 300 m). Herbaceous groundcover, not canopy, most commonly influenced occupancy and increased occupancy for declining surface active or fossorial amphibians. 4. Path analyses showed that, by directly and indirectly reducing groundcover (via conifer densities), plantations had significantly lower occupancy of two declining surface active or fossorial frog species, whereas two common aquatic frog species were tolerant to planting conifers. Among declining species, salamanders showed a greater reduction in occupancy than anurans, likely because of greater vulnerability to the drier forest floor conditions of plantation than naturally regenerating forests. 5. Synthesis and applications: Direct negative impacts of coniferous plantation on amphibians can be addressed by limiting groundcover and soil impacts, including switching from high intensity practices, such as mechanical chopping vegetation or bedding soil, to lower intensity site preparation treatments that are less likely to significantly disturb groundcover. Indirect negative effects of dense canopy cover at planted forests could be lowered by periodically thinning canopies prior to final harvest, thus increasing intact forest groundcover and the conservation of both common and declining amphibians.
Data and code for simulation study and case study in "A Bayesian Dirichlet process community occupancy model to estimate community structure and species similarity"
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Data from: Demographic costs associated with differences in habitat space occupancy
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Data from: Direct and indirect effects of pine silviculture on the larval occupancy and breeding of declining amphibian species
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Data from: On the measurement of occupancy in ecology and paleontology
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Data from: TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation
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Data from: Using areas of known occupancy to identify sources of variation in detection probability of raptors: taking time lowers replication effort for surveys
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Data from: Exploring phylogenetic relationships within Myriapoda and the effects of matrix composition and occupancy on phylogenomic reconstruction
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Data from: Impact of spatial variation of a crucial prey, the molecricket, on hoopoe territory occupancy and reproduction
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Data from: Habitat filtering determines the functional niche occupancy of plant communities worldwide
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Data from: Inferential biases linked to unobservable states in complex occupancy models
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Data from: Determinants of between-year burrow re-occupation in a colony of the European Bee-eater Merops apiaster
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Data from: Effect of detection heterogeneity in occupancy-detection models: an experimental test of time-to-first-detection methods
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Data from: A multi-state dynamic occupancy model to estimate local colonization-extinction rates and patterns of co-occurrence between two or more interacting species
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Data from: Biodiversity dynamics and environmental occupancy of fossil azooxanthellate and zooxanthellate scleractinian corals
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Data from: Joint effect of education and main lifetime occupation on late life health: a cross-sectional study of older adults in Xiamen, China
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Data from: Derivation of occupational thresholds of toxicological concern for airborne systemically-acting non-carcinogenic organic chemicals
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Data from: Dynamic occupancy modeling reveals a hierarchy of competition among fishers, grey foxes, and ringtails
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Data from: Simultaneous estimation of occupancy and detection probabilities an illustration using Cincinnatian brachiopods
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Data from: Large-scale patterns of seed removal by small mammals differ between areas of low vs. high wolf occupancy
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Allen Brain Atlas
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.