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242 results for “occupancy data”

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dryad28/100

Data from: Direct and indirect effects of pine silviculture on the larval occupancy and breeding of declining amphibian species

1. Plantation silviculture is increasing globally and is particularly intensive in temperate coniferous forests, where densely planting trees requires practices common to non-conifer systems that can alter forest floor microhabitat, and potentially threaten amphibian persistence. Most declining amphibian species depend on specific forest microhabitats as terrestrial refugia, but amphibian extirpation associated with tree harvest alone appears unlikely, suggesting that impacts of planting forests on groundcover might better predict recent declines in amphibian occupancy. 2. We repeatedly sampled larval presence or absence of 10 amphibian species native to temperate coniferous forest in the Southeastern United States for one year at 62 isolated wetlands located in either naturally regenerating or planted forest (plantation) to assess three direct ways that planted forests might reduce amphibian breeding site occupancy by: 1) increasing conifer densities, 2) decreasing groundcover, and 3) an indirect pathway, whereby increased tree densities at plantations might reduce groundcover and thus amphibian site occupancy. 3. After controlling for wetland traits and accounting for differences in detection, breeding site occupancy for 8/10 amphibian species was dependent upon whether forests were planted surrounding wetlands (within 300 m). Herbaceous groundcover, not canopy, most commonly influenced occupancy and increased occupancy for declining surface active or fossorial amphibians. 4. Path analyses showed that, by directly and indirectly reducing groundcover (via conifer densities), plantations had significantly lower occupancy of two declining surface active or fossorial frog species, whereas two common aquatic frog species were tolerant to planting conifers. Among declining species, salamanders showed a greater reduction in occupancy than anurans, likely because of greater vulnerability to the drier forest floor conditions of plantation than naturally regenerating forests. 5. Synthesis and applications: Direct negative impacts of coniferous plantation on amphibians can be addressed by limiting groundcover and soil impacts, including switching from high intensity practices, such as mechanical chopping vegetation or bedding soil, to lower intensity site preparation treatments that are less likely to significantly disturb groundcover. Indirect negative effects of dense canopy cover at planted forests could be lowered by periodically thinning canopies prior to final harvest, thus increasing intact forest groundcover and the conservation of both common and declining amphibians.

opencc-zeroSep 2019View details →
dryad28/100

Data and code for simulation study and case study in "A Bayesian Dirichlet process community occupancy model to estimate community structure and species similarity"

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publicAug 2020View details →
dryad28/100

Data from: Demographic costs associated with differences in habitat space occupancy

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publicOct 2017View details →
dryad28/100

Data from: Direct and indirect effects of pine silviculture on the larval occupancy and breeding of declining amphibian species

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publicSep 2019View details →
dryad28/100

Data from: On the measurement of occupancy in ecology and paleontology

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publicJun 2016View details →
dryad28/100

Data from: TAF4, a subunit of transcription factor II D, directs promoter occupancy of nuclear receptor HNF4A during post-natal hepatocyte differentiation

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publicSep 2014View details →
dryad28/100

Data from: Using areas of known occupancy to identify sources of variation in detection probability of raptors: taking time lowers replication effort for surveys

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publicSep 2016View details →
dryad28/100

Data from: Exploring phylogenetic relationships within Myriapoda and the effects of matrix composition and occupancy on phylogenomic reconstruction

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publicMay 2016View details →
dryad28/100

Data from: Impact of spatial variation of a crucial prey, the molecricket, on hoopoe territory occupancy and reproduction

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publicApr 2016View details →
dryad28/100

Data from: Habitat filtering determines the functional niche occupancy of plant communities worldwide

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publicApr 2017View details →
dryad28/100

Data from: Inferential biases linked to unobservable states in complex occupancy models

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publicJan 2017View details →
dryad28/100

Data from: Determinants of between-year burrow re-occupation in a colony of the European Bee-eater Merops apiaster

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publicJun 2016View details →
dryad28/100

Data from: Effect of detection heterogeneity in occupancy-detection models: an experimental test of time-to-first-detection methods

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publicMay 2019View details →
dryad28/100

Data from: A multi-state dynamic occupancy model to estimate local colonization-extinction rates and patterns of co-occurrence between two or more interacting species

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publicNov 2018View details →
dryad28/100

Data from: Biodiversity dynamics and environmental occupancy of fossil azooxanthellate and zooxanthellate scleractinian corals

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publicJan 2015View details →
dryad28/100

Data from: Joint effect of education and main lifetime occupation on late life health: a cross-sectional study of older adults in Xiamen, China

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publicJun 2016View details →
dryad28/100

Data from: Derivation of occupational thresholds of toxicological concern for airborne systemically-acting non-carcinogenic organic chemicals

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publicJul 2017View details →
dryad28/100

Data from: Dynamic occupancy modeling reveals a hierarchy of competition among fishers, grey foxes, and ringtails

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publicDec 2018View details →
dryad28/100

Data from: Simultaneous estimation of occupancy and detection probabilities an illustration using Cincinnatian brachiopods

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publicOct 2012View details →
dryad28/100

Data from: Large-scale patterns of seed removal by small mammals differ between areas of low vs. high wolf occupancy

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publicMay 2021View details →

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Allen Brain Atlas

Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.

allen-brain-atlas
neuroscienceopenDocumentation, web resources, and API references are available online.
Last verified 2026-04-30Open record

Annotated Behaviour and Observability Dataset (ABODe)

ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.

abode-home-cage
behavioral-neuroscienceopenThe DataShare record exposes download links for annotations, documentation, license text, and the zipped per-snippet data directory.
Last verified 2026-04-30Open record

DANDI Archive for NWB datasets

DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.

dandi-nwb
electrophysiologyopenPublished Dandiset metadata and archive endpoints are available through the production DANDI API.
Last verified 2026-04-30Open record

International Brain Laboratory public data

The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.

ibl
behavioral-neuroscienceopenPublic sessions can be searched and loaded from the IBL public data server through ONE.
Last verified 2026-04-29Open record

OpenNeuro

OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.

openneuro
neuroscienceopenPublished datasets are available on demand over the internet.
Last verified 2026-04-29Open record