Find research datasets worth reusing

Atomic resolution X-ray diffraction images of native endothiapepsin.

X-ray diffraction images that were collected at DESY (Hamburg) to a resolution of 0.9 Angstroms from native endothiapepsin. The data were collected using a MAR345 detector at beamline BW7B in June 1999. More details are in the included notes.

Atomic resolution X-ray diffraction images for endothiapepsin complexed with the inhibitor H261.

X-ray diffraction images for a complex of endothiapepsin with the hydroxyethylene renin inhibitor H261 which were collected at DESY (Hamburg) in June 1998 using the beamline BW7B with a Mar image plate detector in two passes. The data extend to a resolution of almost 1.1 Angstroms. More details are given in the accompanying notes.

X-ray diffraction images for 5-aminolevulinic acid dehydratase with a putative reaction intermediate resembling the product porphobilinogen bound.

X-ray diffraction images for yeast 5-aminolevulinic acid dehydratase co-crystallised with the substrate 5-aminolevulinic acid. The structure demonstrated a putative product-like intermediate bound covalently to Lys 263 with an amino side chain ligated to the active-site zinc ion in a position normally occupied by a catalytic hydroxide ion. The data were collected in two passes using the ESRF beamline ID29 in Feb 2002 and extend to approximately 1.6 Å resolution.

X-ray diffraction images for yeast 5-aminolevulinic acid dehydratase complexed with 4-oxosebacic acid.

X-ray diffraction images for yeast 5-aminolaevulinic acid dehydratase complexed with 4-oxosebacic acid which were collected using beamline ID14-2 at the ESRF (Grenoble) in Feb 2001.

X-ray diffraction images for the H145E mutant of the iron-dependent superoxide dismutase from Mycobacterium tuberculosis.

X-ray diffraction images of the H145E mutant (prefixed h145e) which were collected in October 1995 using a graphite-monochromated copper K-alpha rotating anode source (wavelength 1.5418 Å) with a Marresearch 90 cm image plate detector at a distance of 120 mm from the crystal. The data were collected at room temperature in two passes, each consisting of 100 one degree rotations of the crystal. Each image had an exposure time of 20 minutes. The crystal was rotated in the capillary tube prior to collection of the second pass in order to record the 'blind' region of the diffraction pattern and this set of images is prefixed h145eb.

X-ray diffraction images for the H145Q mutant of the iron-dependent superoxide dismutase from Mycobacterium tuberculosis.

X-ray diffraction images collected from one crystal at room temperature using a rotating anode copper source (wavelength 1.5418 Å) and a 30 cm Marresearch image plate detector. The crystal-to-detector distance was 150 mm and a 90 mm image plate scan radius was used. Each of the 60 images had an exposure time of 20 minutes and corresponds to a 3 degree phi-rotation of the crystal. Diffraction extends to about 3.3 Å resolution.

X-ray diffraction images for bovine inositol monophosphatase.

X-ray diffraction images for bovine inositol monophosphatase which were collected using the ESRF beamline ID14-4 to a resolution of around 1.4 Å. The data were collected in two passes, the second for measuring intensities that were overloaded in the first. More details are given in the included notes.

X-ray diffraction images for 5-aminolevulinic acid dehydratase (ALAD) from E. coli.

X-ray diffraction images for Escherichia coli 5-aminolevulinic acid dehydratase (ALAD) which was crystallised in the presence of the inhibitor levulinic acid (15 mM) and bismuth nitrate (1 mM). The data were collected at beamline 9.6 at the SRS Daresbury Laboratory (UK) on 10th March 1994 using a 30 cm Marresearch image plate detector, a crystal temperature of 100 K, a wavelength of 0.88 Å and a crystal-to-detector distance was 300 mm. The oscillation angle was 2.5 degrees and 21 images were collected at constant dose in the time available. A wax image for determining the direct beam position was taken with the detector at a distance of 400 mm.

X-ray diffraction images for yeast 5-aminolevulinic acid dehydratase complexed with 4-keto-5-aminohexanoic acid.

X-ray diffraction images which were collected at the EMBL beamline BW7B, DESY (Hamburg) on 28th June 1999 using a Marresearch 345 image plate detector. The data were collected in three passes, images in the first main one having file prefix hykah, the second being a low-resolution run (lr) and, the last, a very high resolution (vhr) pass. More details are given in the notebook pages.

X-ray diffraction images for yeast 5-aminolevulinic acid dehydratase complexed with succinylacetone.

X-ray diffraction images which were collected on 28th March 1999 at the EMBL beamline BW7B at DESY (Hamburg) using a Marresearch 345 image plate detector. More information in the notes.

Star Formation In Nearby Clouds (SFiNCs): X-ray And Infrared Source Catalogs And Membership. SPCM Atlas Dataset.

The SPCM (SFiNCs Possible Cluster Member) Atlas dataset accompanies the article entitled ``Star Formation In Nearby Clouds (SFiNCs): X-ray And Infrared Source Catalogs And Membership,'' by Getman, Broos, Kuhn, Feigelson, Richert, Ota, Bate, and Garmire, to appear in The Astrophysical Journal Supplement Series. The paper is also available on-line on astro-ph at: https://arxiv.org/abs/1612.05282 . SPCM Atlas is a collection of 25 PDF files. Four pdf files are associated with the SFiNCs star forming region (SFR) Cep OB3b, and 21 pdf files are associated with the remaining 21 SFiNCs SFRs. Full description of SPCM Atlas is given in the Appendix B section of the article. This upload is superseded by a new version, http://doi.org/10.5281/zenodo.345398 .

X-ray diffraction images of yeast 5-aminolevulinic acid dehydratase complexed with substrate 5-aminolevulinic acid.

X-ray diffraction images collected at the BW7B beamline at DESY (Hamburg) on 2 Jun 1998. More details in the notes.

X-ray diffraction images of endothiapepsin complexed with the norstatine inhibitor CP-80,794.

X-ray diffraction images of endothiapepsin complexed with CP-80,794 collected at ESRF beamline ID14-2 on 28th April 2001 to 0.98 Å resolution. More details in the included notes.

X-ray diffraction images of endothiapepsin complexed with the inhibitor H256.

X-ray diffraction images for endothiapepsin complexed with the reduced bond inhibitor H256 collected at ESRF beamline ID14-2.

Atomic resolution X-ray diffraction images for endothiapepsin complexed with a cyclic statine inhibitor.

X-ray diffraction images for endothiapepsin complexed with inhibitor CP-129,541. The data were collected on 29th April 2001.

opencc-by-4.0Feb 2017View details →

X-ray diffraction images of endothiapepsin complexed with the phosphostatine inhibitor PD-130,328.

X-ray diffraction images collected at the ESRF (Grenoble) beamline ID14-2 using an ADSC Quantum 4R CCD detector on 9 Apr 2000.

opencc-by-4.0Apr 2017View details →

Dataset accompanying the article: Analyzing X-Ray tomographies of granular packings

This dataset (and the added analysis software) belong to the article: Analyzing X-Ray tomographies of granular packings in Review of Scientific Instruments. The abstract of the article: Starting from three-dimensional volume data of a granular packing, as e.g. obtained by X-ray Computed Tomography, we discuss methods to first detect the individual particles in the sample and then analyze their properties. This analysis includes the pair correlation function, the volume and shape of the Voronoi cells and the number and type of contacts formed between individual particles. We mainly focus on packings of monodisperse spheres, but we will also comment on other monoschematic particles such as ellipsoids and tetrahedra. This paper is accompanied by a package of free software containing all programs (including source code) and an example three-dimensional dataset which allows the reader to reproduce and modify all examples given.

opencc-by-4.0Aug 2017View details →

Ex-situ X-ray computed tomography data for a non-crimp fabric based fibre composite under fatigue loading

Ex-situ X-ray CT fatigue testing data sets published as a data in brief: "Ex-situ X-ray computed tomography data for a non-crimp fabric based fibre composite under fatigue loading", Data in brief, 2017, doi.org/10.1016/j.dib.2017.10.074. Together with the following article: K. M. Jespersen and L. P. Mikkelsen, “Three dimensional fatigue damage evolution in non-crimp glass fibre fabric based composites used for wind turbine blades,” Compos. Sci. Technol. (In press), 2017, 10.1016/j.compscitech.2017.10.004.

opencc-by-4.0Oct 2023View details →

Multiwavelength observations reveal a faint candidate black hole X-ray binary in IGR J17285-2922

<h2>Reproduction package for the paper "Multiwavelength observations reveal a faint candidate black hole X-ray binary in IGR J17285-2922"</h2><h4>This is a reproduction package with the internal API designation of 'silver'</h4><h4>Monthly Notices of the Royal Astronomical Society, Volume 507, Issue 1, October 2021, Pages 330–349</h4><h4>Authors: M. Stoop, J. van den Eijnden, N. Degenaar, A. Bahramian, S. J. Swihart, J. Strader, F. Jiménez-Ibarra, T. Muñoz-Darias, M. Armas Padilla, A. W. Shaw, T. J. Maccarone, R. Wijnands, T. D. Russell, J. V. Hernández Santisteban, J. C. A. Miller-Jones, D. M. Russell, D. Maitra, C. O. Heinke, G. R. Sivakoff, F. Lewis D. M. Bramich</h4><h4>Paper DOI: https://doi.org/10.1093/mnras/stab2127</h4><h4>Zenodo DOI: https://doi.org/10.5281/zenodo.4664505</h4> <h2>Raw Data</h2> - Uncalibrated X-ray data is given in ./raw_data - Radio data is too large in size to be stored on Zenodo. If you want to acquire these images, but can be found under https://data.nrao.edu searching for project code SF8027 - Raw data for the optical spectra can be acquired by contacting J. van den Eijnden <h2>Software</h2> - OS: MacOS Big Sur 11.6 Programming languages: - Python (3.9.7), matplotlib, numpy, pandas, scipy, linmix - Jupyter Notebook (6.3.0) NASA HEASARC's Software: - xrtpipeline (version 0.13.5) - caldb in the heasoft package (version 6.26.1) - xselect (version v2.4g) - xrtmkarf (version 0.6.3) - xspec (v. 12.10.1f) - casa pipeline (5.6.2) <h2>Figures and Tables</h2> - scripts and data to make the figures and tables can be found in ./figures_tables - figure 4, 5, 6, and 7 are made by collaborators. Please contact J. van den Eijnden if you would like access to data files or scripts for these figures. - X-ray lightcurve fit results in Table 3 is done by collaborators. Please contact J. van den Eijnden if you would like access to data files or scripts for this table. <h2>Intermediate data products  </h2> - Intermediate data products can be found in the directory ./intermediate_data - This includes the calibrated X-ray data, VLA imaging scripts to determine the flux density and spectral index. - Scripts can also be found here for intermediate data products for several figures (1, 2, 3, 8) <h2>Scientific-analysis</h2> - The directory ./scientific_analysis contains scripts and data to reduce the raw data to the intermediate data products. - ./Xray_files how to calibrate the Swift X-ray spectra - ./Xray_spectral_evolution contains how the intermediate data products for figure 3 - ./VLA_data_reduction how to reduce the VLA data and determine flux densities and spectral indices - ./Radio_Xray_Coupling contains the intermediate data products for figure 2 - ./Xray_lightcurve_fitting contains intermediate data products for Table 3 and fitting performed in section 3.4 - ./Orbital_Period contains intermediate data products for Table 4 and Figure 8 - ./xray contains backup files related to the x-ray spectra - ./radio contains backup files related to the radio data - the main results (intermediate data products) are the .txt files in this directory