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230 results for “species presence”
Data from: Evaluating presence-only species distribution models with discrimination accuracy is uninformative for many applications
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Data from: Establishment success of introduced amphibians increases in the presence of congeneric species
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Data from: Ecological fidelity of functional traits based on species presence-absence in a modern mammalian bone assemblage (Amboseli, Kenya)
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Data from: Speciation in the presence of gene flow: population genomics of closely related and diverging Eucalyptus species
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Data from: Correction of location errors for presence-only species distribution models
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Data from: Evolutionary reconstruction supports the presence of a Pleistocene Arctic refugium for a large mammal species
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Dataset: Species presence, trait and philogeny database. Data from: Shift from trait convergence to divergence along old field succession. Journal of Vegetation Science.
<p>This dataset was use in the manuscript "Shift from trait convergence to divergence along old field succession" publish at Journal of Vegetation Science. It contains the data of species presence at three different plots and species trait values (SLA, LDMC, height, seed weight and Phylogeny). We show that at the initial stage of succession, there is a scale-invariant pattern of trait convergence. On the contrary, in the late and intermediate stages of succession we observed that trait divergence became frequent at smaller grains and extents. The trend along the chronosequence is consistent with the theoretical hypothesis that predicts a shift from convergence to divergence along succession.</p>
FIGURES 27 and 28 in The presence of Notanisus Walker (Hymenoptera: Pteromalidae) in North America and revision of the oulmesiensis species group
FIGURES 27 and 28. Notanisus gracilis, ♀ holotype. 27, fore wing. 28, antenna.
Supplementary material 3 from: Molloy SW, Davis RA, Dunlop JA, van Etten EJB (2017) Applying surrogate species presences to correct sample bias in species distribution models: a case study using the Pilbara population of the Northern Quoll. Nature Conservation 18: 27-46. https://doi.org/10.3897/natureconservation.18.12235
Weighted mean SDMs for individual algorithms and evaluation statistics (biomod2) :
Supplementary material 2 from: Molloy SW, Davis RA, Dunlop JA, van Etten EJB (2017) Applying surrogate species presences to correct sample bias in species distribution models: a case study using the Pilbara population of the Northern Quoll. Nature Conservation 18: 27-46. https://doi.org/10.3897/natureconservation.18.12235
Full readout for the MaxEnt northern quoll SDM :
Supplementary material 1 from: Molloy SW, Davis RA, Dunlop JA, van Etten EJB (2017) Applying surrogate species presences to correct sample bias in species distribution models: a case study using the Pilbara population of the Northern Quoll. Nature Conservation 18: 27-46. https://doi.org/10.3897/natureconservation.18.12235
GIS data sets used in variable assessments and map of Pilbara vegetation systems :
Figures 1-2 in Morphology analysis supports presence of more than one species in the "Euscorpius carpathicus" complex (Scorpiones: Euscorpiidae)
Figures 1-2: 1. Euscorpius carpathicus (Linnaeus), male, Mehadija, Romania. 2. Euscorpius balearicus Caporiacco, female, Puerto Alcudia, Mallorca, Balearic Islands, Spain.
Figure 12 in Morphology analysis supports presence of more than one species in the "Euscorpius carpathicus" complex (Scorpiones: Euscorpiidae)
Figure 12: Statistical data for pedipalp patella trichobothrial counts of Euscorpius carpathicus. Horizontal bar: minimum, maximum, corrected minimum/maximum (mean-SD and mean+SD), and mean; n = number of samples, cv = coefficient of variability (SD/mean); vertical bars: percentage per count, number of samples per count on top and count value on bottom. eb = external basal, eba = external basal-a, em = external median, et = external terminal.
SimPhy configuration scripts for simulations reported in the study titled: Species tree inference methods intended to deal with incomplete lineage sorting are robust to the presence of paralogs
<p>Many recent phylogenetic methods have focused on accurately inferring species trees when there is gene tree discordance due to incomplete lineage sorting (ILS). For almost all of these methods, and for phylogenetic methods in general, the data for each locus is assumed to consist of orthologous, single-copy sequences. Loci that are present in more than a single copy in any of the studied genomes are excluded from the data. These steps greatly reduce the number of loci available for analysis. The question we seek to answer in this study is: What happens if one runs such species tree inference methods on data where paralogy is present, in addition to or without ILS being present? Through simulation studies and analyses of two large biological data sets, we show that running such methods on data with paralogs can still provide accurate results. We use multiple different methods, some of which are based directly on the multispecies coalescent (MSC) model, and some of which have been proven to be statistically consistent under it. We also treat the paralogous loci in multiple ways: from explicitly denoting them as paralogs, to randomly selecting one copy per species. In all cases the inferred species trees are as accurate as equivalent analyses using single-copy orthologs. Our results have significant implications for the use of ILS-aware phylogenomic analyses, demonstrating that they do not have to be restricted to single-copy loci. This will greatly increase the amount of data that can be used for phylogenetic inference.</p>
Figure 1 in Presence of rhizoids in two species of the genus Bowerbankia (Bryozoa: Ctenostomata) and their systematic relevance
Figure 1. Growing tip of a branch in Bowerbankia pustulosa.
FIGURES 1–2 in The presence of Homoeoneuria s.s. (Ephemeroptera: Oligoneuriidae) in South America with the description of a new species
FIGURES 1–2. Homoeoneuria (H.) watu sp. n., adult. 1, Habitus of male imago; 2, male genitalia.
Data from: Evaluating summary methods for multi-locus species tree estimation in the presence of incomplete lineage sorting
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Behavioural plasticity in a native species is related to foraging resilience in the presence of an aggressive invader
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Data from: Statistical inference of allopolyploid species networks in the presence of incomplete lineage sorting
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SimPhy configuration scripts for simulations reported in the study titled: Species tree inference methods intended to deal with incomplete lineage sorting are robust to the presence of paralogs
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Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.