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357 results for “supplementary information”
Supplementary Information: Human populations in the world's mountains: spatio-temporal patterns and potential controls
<p>Supplementary Information (data, code, figures) for "Human populations in the world’s mountains: spatio-temporal patterns and potential controls" (Thornton et al., 2022)</p>
Supplementary Information - Circulating insulin-like growth factor system adaptations in hibernating brown bears indicate increased tissue IGF availability
<p>Supplementary figures and tables for the manuscript entitled “Circulating insulin-like growth factor system adaptations in hibernating brown bears indicate increased tissue IGF availability”.</p>
Supplementary Information and Data
<p><strong>Supporting Information:</strong> Supplementary figures, tables and references</p> <p><strong>File Name: Data S1</strong></p> <p>Description: Detailed consumption-based freight turnover volume associated with international trade from 1995 to 2015</p> <p><strong>File Name: Data S2</strong></p> <p>Description: Annual growth rate of all the regions or countries between 1995 and 2015 (Sheet 1); The structure of freight turnover of all the regions or countries in 2015 (t-km) (Sheet 2); The equivalent distances of all the regions or countries in 2015 (km) (Sheet 3)</p> <p><strong>File Name: Data S3</strong></p> <p>Description: The average distances of regions or countries from 1995 to 2015</p> <p><strong>File Name: Data S4</strong></p> <p>Description: Detailed results for final consumption in weight and the equivalent distances of regions or countries from 1995 to 2015</p> <p><strong>File Name: Data S5</strong></p> <p>Description: Interregional fluxes of transported goods driven by PR China, the United States and the EU-28</p> <p><strong>File Name: Data S6</strong></p> <p>Description: Detailed CO<sub>2</sub> emissions embodied in consumption-based freight transport of all the regions and countries in 2015.</p>
Supplementary Information: CHAPTER 2 - Unveiling genomic features linked to traits of plant-growth-promoting bacterial communities from sugarcane
<p>Appendix A. Summary of counts of subreads and circular consensus sequencing (CCS) sequences obtained for PacBio sequencing of SMRT libraries. (EMS_1.xlsx)</p> <p>Appendix B. Taxonomy assignment of MAGs at the higher taxonomic rank obtained from GTDB-tk and Kraken tools. (EMS_2.xlsx)</p> <p>Appendix C. Report of the classification workflow using GTDB-tk. (EMS_3.xlsx)</p> <p>Appendix D. Matrix of the KEGG Orthology (KOs) frequencies annotated by the EnrichM tool. (EMS_4.xlsx)</p> <p>Appendix E. Reconstruction and completeness of KEGG modules annotated by EnrichM. The asterisks (*) in the header represent additional values obtained by the script ‘classKEGGModules.pl’ (https://github.com/dgpinheiro/bioinfoutilities) to estimate PGPTs in KEGG modules. (EMS_5.xlsx)</p> <p>Appendix F. The secondary metabolite biosynthesis gene clusters (BGCs) identified with AntiSMASH. (EMS_6.xlsx)</p> <p>Appendix G. The raw count of plant growth-promoting traits (PGPTs) annotations, according to KEGG Orthology (KO) predictions for MAGs. (EMS_7.xlsx)</p> <p>Appendix H. The raw count of plant growth-promoting traits (PGPTs) that comprises the 39 classes (level 5 hierarchy) identified as enriched according to the results of Pearson's Chi-square test (qvalue ≤ 0.1). (EMS_8.xlsx)</p>
Supplementary material 2 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
IPNI response XML : Explanation note: XML response of IPNI to the query in Suppl. material 1. The response is sent back to Pensoft and contains the registration numbers of the new genus name and the new combination [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 4 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
TaxPub response XML : Explanation note: TaxPub XML returned from ZooBank to Pensoft containing UUIDs of the article, authors and new taxon names [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 1 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of IPNI : Explanation note: XML query sent from Pensoft to IPNI on the day of acceptance of the manuscript for publication [exemplified with the paper of Robinson and Skvarla (2013)].
Supplementary material 3 from: Penev L, Paton A, Nicolson N, Kirk P, Pyle RL, Whitton R, Georgiev T, Barker C, Hopkins C, Robert V, Biserkov J, Stoev P (2016) A common registration-to-publication automated pipeline for nomenclatural acts for higher plants (International Plant Names Index, IPNI), fungi (Index Fungorum, MycoBank) and animals (ZooBank). In: Michel E (Ed.) Anchoring Biodiversity Information: From Sherborn to the 21st century and beyond. ZooKeys 550: 233–246. https://doi.org/10.3897/zookeys.550.9551
XML response of TaxPub : Explanation note: TaxPub XML of a ready-to-publish manuscript submitted from Pensoft to ZooBank [exemplified with the paper of Morffe and Rodríguez (2013)].
Supplementary material 1 from: Páll-Gergely B, Hunyadi A, Ablett J, Văn Lương HV, Naggs F, Asami T (2015) Systematics of the family Plectopylidae in Vietnam with additional information on Chinese taxa (Gastropoda, Pulmonata, Stylommatophora). ZooKeys 473: 1-118. https://doi.org/10.3897/zookeys.473.8659
Exact locality data of Vietnamese Plectopylidae species.: Explanation note: This Excel file contains all exact locality data of Vietnamese Plectopylidae. The localities are subdivided into three columns (verbal description of the locality; latitude; longitude).
FIGURE 4. Neofilchneria cheni Zhang, Li & Li in A new species of Neofilchneria (Plecoptera: Perlodidae) from China, with supplementary information on N. wanglanga Chen, 2019
FIGURE 4. Neofilchneria cheni Zhang, Li & Li, sp. nov., holotype male from Shennong peak Scenic Area. a: terminalia, dorsal view. b: terminalia, ventral view. c: terminalia, dorsal view. d: epiproct, dorsal view. e: epiproct, lateral view. f: aedeagus, dorsal view. g: aedeagus, ventral view. h: aedeagus, lateral view.
FIGURE 3. Neofilchneria cheni Zhang, Li & Li in A new species of Neofilchneria (Plecoptera: Perlodidae) from China, with supplementary information on N. wanglanga Chen, 2019
FIGURE 3. Neofilchneria cheni Zhang, Li & Li, sp. nov., holotype male from Shennong peak Scenic Area. a: left forewing, dorsal view. b: left hind wing, dorsal view.
FIGURE 2. Neofilchneria cheni Zhang, Li & Li in A new species of Neofilchneria (Plecoptera: Perlodidae) from China, with supplementary information on N. wanglanga Chen, 2019
FIGURE 2. Neofilchneria cheni Zhang, Li & Li, sp. nov., holotype male from Shennong peak Scenic Area. a: habitus, dorsal view. b: habitus, ventral view. c: head and pronotum, dorsal view. d: head, pro- and mesosterna, ventral view.
FIGURE 5. Neofilchneria cheni Zhang, Li & Li in A new species of Neofilchneria (Plecoptera: Perlodidae) from China, with supplementary information on N. wanglanga Chen, 2019
FIGURE 5. Neofilchneria cheni Zhang, Li & Li, sp. nov., paratype female from Shennong peak Scenic Area. a: head and pronotum, dorsal view. b: terminalia, ventral view.
FIGURE 1. Neofilchneria wanglanga Chen, 2019, male from PianMa Town. a in A new species of Neofilchneria (Plecoptera: Perlodidae) from China, with supplementary information on N. wanglanga Chen, 2019
FIGURE 1. Neofilchneria wanglanga Chen, 2019, male from PianMa Town. a: aedeagus, ventral view. b: aedeagus, dorsal view. c: aedeagus, lateral view.
Wave transmission through the megaregolith as a mechanism for lunar cold spot formation: supplementary information
<p>Supplementary information for Frizzell and Hartzell, 2024 - Wave transmission through the megaregolith as a mechanism for lunar cold spot formation. Contains LIGGGTS input scripts and restart files, MATLAB processing and analysis codes along with example processed *.mat files. Any generated code can be found at our linked public repository.</p>
Supplementary information for: A new tiny fossil penguin from the Late Oligocene of New Zealand and the morphofunctional transition of the penguin wing
<p>The Late Oligocene is a period of high penguin diversity, following major changes in the marine environment at the Eocene/Oligocene boundary and prior to the emergence of crown penguins in the Miocene. Historically, a large morphological gap existed between the most crownward <em>Platydyptes </em>among the Oligocene penguins from New Zealand and the Early Miocene stem penguins such as <em>Palaeospheniscus</em> and <em>Eretiscus </em>from South America. Here we describe a new species that contributes to filling this gap. <em>Pakudyptes</em> <em>hakataramea</em> gen. et sp. nov. is the earliest tiny penguin, overlapping in size with the smallest extant species, the little penguin <em>Eudyptula minor</em>. Its distinctive combination of a well-developed proximal end of the humerus and a rather archaic elbow joint provides clues to the evolution of penguin wings. Phylogenetic analysis indicates that penguin wings evolved rapidly from the Late Oligocene to the Early Miocene, together with the acquisition of morphofunctional and hydrodynamical characteristics that enable the excellent swimming ability of modern penguins. As an indicator of aquatic adaptation, bone microanatomy also shows a comparable structure to that of <em>Eudyptula</em>. The appearance of the smallest body size and the evolution of modern wings may have led to the ecological diversity of modern penguins, which confirms the importance of Zealandia in penguin evolution.</p>
Lytic bacteriophages of the Roseobacter group - Supplementary information
<p>These are supplementary files belonging to my dissertation with the title "Lytic bacteriophages of the Roseobacter group", which will be published via the BIS Library and Information System of the Carl-von-Ossietzky Universität Oldenburg.</p>
Supplementary information to the data note The genome sequence of the Sandhill Rustic moth Luperina nickerlii (Freyer, 1845) subspecies leechi Goater, 1976"
<p><span>Supplementary information to the data note: "</span>The genome sequence of the Sandhill Rustic moth <em>Luperina nickerlii </em>(Freyer, 1845) subspecies <em>leechi</em> Goater, 1976" .</p> <p><span>The LSU analysis of the <em><span>Luperina nickerlii</span></em> subsp. <em><span>leechi</span></em> genome, presenting evidence that this is a ZO female. </span></p>
Supplementary Information
<p>Supplementary information : figures for Romieu <em>et al.,</em> 2024 manuscrit : score value by non-AI windows in test sets (for MaLadapt without Q95 and genomatnn with allel frequency at 5%) and ROC curves. </p>
Information needs in bug reports for web applications (supplementary material)
<p>This repository contains supplementary material for the manuscript "Information needs in bug reports for web applications". The zip archive data.zip (34,835KB) includes the following files:</p> <ul> <li>project_metadata.csv: List of 10 analyzed projects and metadata (9KB).</li> <li>bug_reports.csv: List of bug reports studied in the paper, including meta-data (204,390KB).</li> <li>bug_reports_additional_data: Additional data/information in bug reports captured in comments of bug reports, including meta-data (5,269KB).</li> </ul>
ScienceDex guides
Understand access before you commit
These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.