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FIGURE 12. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 12. A. Termitomyces medius (HUY1-DM 372G, holotype): arrow shows the conspicuous perforatorium. B/C Termitomyces medius form ochraceus (HUY1-DM 602B, holotype): arrow shows the absent or inconspicuous perforatorium. Basidiomes B and C removed from ethanol (90°) conservation. Description was done on freshly collected basidiomes before dipping them in ethanol. D/E. T. brunneopileatus (KM 144 300 = HUY1-DM 392 and KM 144 301 = HUY1-DM 394, holotypes).
FIGURE 7. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 7. A. Termitomyces striatus form bibasidiatus (HUY1-DM 280B) with a long underground pseudorhiza (Fig. 7A arrow). B/C/D Termitomyces striatus form subclypeatus [(KM 143 968 = HUY1-DM 370B with an acute to spiniform perforatorium (Fig. 7D arrow) and HUY1-DM 151 with a twisted stipe (Fig. 7B: arrow)].
FIGURE 4. A in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 4. A. Termitomyces letestui (facies 1) (KM 144 285 = HUY1-DM 150D, holotype). The arrows show the pseudorhiza (top arrow) and the cylindrical-mammiform perforatorium (bottom arrow).
FIGURE 2 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 2. Most likelyhood tree showing phylogenetic relationships in Termitomyces. Tree obtained with RAxML using a combined nLSU-mtSSU dataset. Bootstrap values are available in Fig. 1. The tree is rooted with Lyophyllum semitale, L. descates and L. ambustum. Names in bold represent new taxa, those followed by a star (*) are confirmed new taxa from previous studies and names followed by a black hexagon (■) are taxa whose initial names changed in accordance with their placement on the tree.
FIGURE 3 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 3. Termitomyces letestui (KM 144 285 = HUY1-DM 150D, holotype and KM 144286 = HUY1-DM 213E). A. Basidiospores. B. Basidia. C. Pleurocystidia. D. Cheilocystidia. Scale bars: A-D = 10 μm.
FIGURE 13 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 13. Termitomyces medius form ochraceus (HUY1-DM 602B, holotype). A. Basidiospores. B. Basidia. C. Cheilocystidia. D. Pleurocystidia. E. Pileipellis. Scale bars: A-D = 10 μm. E= 20 μm.
FIGURE 14 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 14. Termitomyces brunneopileatus (KM 144 300 = HUY1-DM 392 and KM 144 301 = HUY1-DM 394, holotypes). A. Basidiospores. B. Basidia. C. Cheilocystidia. D. Pleurocystidia. E. Pileipellis. F. Longitudinal section of the perforatorium. Scale bars: A-F = 10 μm.
FIGURE 1 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 1. Bootstrap consensus tree showing phylogenetic relationships in Termitomyces. Tree obtained with RAxML using a combined nLSU-mtSSU dataset. Bootstrap values superior to 50% are reported above the clades and sub-clades. The tree is rooted with Lyophyllum semitale, L. descates and L. ambustum. Names in bold represent new taxa, those followed by a star (*) are confirmed new taxa from previous studies and names followed by a black hexagon (■) are taxa whose initial names changed in accordance with their placement on the tree.
FIGURE 6 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 6. Termitomyces striatus form subclypeatus (KM 143 968 = HUY1-DM 370B, holotype and HUY1-DM 151, HUY1-DM 151C). A. Basidiospores. B. Basidia. C. Cheilocystidia. Scale bars: A-C = 10 μm.
FIGURE 11 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 11. Termitomyces medius (HUY1-DM 372G). A. Basidiospores. B. Basidia. C. Pleurocystidia (thin- and thick-walled). D. Cheilocystidia (thin- and thick-walled). Scale bars: A-B = 10 μm. C-D = 10 μm.
FIGURE 10 in Phylogenetic relationships, taxonomic revision and new taxa of Termitomyces (Lyophyllaceae, Basidiomycota) inferred from combined nLSU- and mtSSU-rDNA sequences
FIGURE 10. Termitomyces subumkowaan (KM 143 969 = HUY1-DM 260B and HUY1-DM 260F). A. Basidiospores. B. Basidia and Basidioles C. Caulocystidia. D. Cheilocystidia. Scale bars: A-B-C = 10 μm. C = 100 μm.
FIGURE 1. Phylogenetic relationships among 47 in A new species of Astrochapsa (Graphidaceae) from Martinique, with a world-wide key to the species
FIGURE 1. Phylogenetic relationships among 47 samples within Graphidaceae based on a data set of nuLSU sequences that resulted from a Bayesian analysis using MrBayes. Posterior probabilities are shown near internal branches. Internal branches considered strongly supported (Posterior probabilities ≥ 0.95) are represented by thicker lines. The new species, Astrochapsa martinicensis, is highlighted. GenBank accession numbers preceding the species names act as sequence identifiers.
FIGURE. 1. Phylogenetic relationships among 25 in Ochrolechia incarnata comb. nov. (Lecanoromycetes, Ascomycota), a distinct species of the O. parella group from Europe and Macaronesia
FIGURE. 1. Phylogenetic relationships among 25 samples of Ochrolechia inferred from Bayesian analysis of nuITS sequences. Posterior probabilities are shown above internal branches, and Maximum Likelihood bootstrap values obtained from a RAxML analysis are shown below internal branches. Internal branches strongly supported in both analyses, are represented by thicker lines. The clade of O. incarnata, a species resurrected here, is highlighted. Corticolous samples of O. parella are marked with an asterisk (*).
FIGURE 4 in Phylogenetic relationships of Hechtia (Hechtioideae; Bromeliaceae)
FIGURE 4. Ancestral character state reconstructions of selected morphological characters using Maximum Parsimony, on the 50 % majority rule tree resulting from a Bayesian analysis of morphological and molecular evidence for species of Hechtia and selected outgroup. A. Growth pattern. B. Foliar margin. C. Ovary position. See Appendix 2 for a list of morphological characters used in the analysis. For this, we used the consensus tree of 50 % majority of Bayesian inference using the total evidence, and the reconstruction of the ancestral states was done through parsimony.
FIGURE 1 in Phylogenetic relationships of Hechtia (Hechtioideae; Bromeliaceae)
FIGURE 1. Distribution of Hechtia (blue dots) in Megamexico, based on herbarium specimens (sensu Pech-Cárdenas 2015).
FIGURE 3. A 50 in Phylogenetic relationships of Hechtia (Hechtioideae; Bromeliaceae)
FIGURE 3. A 50 % majority rule tree resulting from a Bayesian analysis of the chloroplast (rpl32-trnL, ycf1(a, b), nuclear PRK region, and seven morphological characters of Hechtia. Bootstrap values are given above the branches, posterior probabilities below the branches. Clades are indictaed with letters (A-F) and discussed in the text. The Cortes Sea (Clade CSC); Tehuantepec Isthmus Clade (TIC), Mixteca Region Clade (MRC), and Tehuantepec-Mixteca Clade (TMC).
FIGURE 2 in Phylogenetic relationships of Hechtia (Hechtioideae; Bromeliaceae)
FIGURE 2. Left: A 50 % majority rule tree resulting from of a Bayesian analysis of the plastid DNA regions rpl32-trnL, ycf1(a,b). Posterior probabilities are above the branches. Right: A 50 % majority rule tree resulting from a Bayesian analysis of the nuclear region PRK. Posterior probabilities values are indicated above the branches. Clades are indicated with letters (A-F) and discussed in the text.
FIGURE 5 in Phylogenetic relationships of Hechtia (Hechtioideae; Bromeliaceae)
FIGURE 5. Features of Hechtia. A. Rhizomatous rosettes of Hechtia roseana. B. Spinose foliar margins of Hechtia iltisii. Growth patterns (Ramírez et al. 2014): C. Hechtia malvernii with central inflorescence on mature rosette [SSP]. E. Sympodial with precacious blooming [SPFP] in Hechtia huamelulaensis. F. Pseudomonopodial [PMP] in Hechtia schottii. D. Pistillate flower showing simple-erect with sessile stigmatic lobes in Hechtia stenopetala. G. Staminate flowers of Hechtia schottii. H. Staminate flowers with a buttlerfly in Hechtia rosea. I. Capsular fruits of Hechtia roseana. J. Claviform seeds of Hechtia montana. K. Almost wingless, ellipsoid seeds of Hechtia tehuacana. L. Fusiform seeds of Hechtia aquamarina. Photograph credits: (A) Claudia Ramírez-Díaz. (C, I) K. Romero-Soler. (B, E) I. RamírezMorillo. (D) G. Romero-González. (G) G. Carnevali. (H) D. Carnevali. (F) C. Jiménez-Nah. (J, K, L) L. Can-Itzá and E. Gorocica.
FIGURE 1. Phylogenetic relationships among 20 in Piper jianfenglingense, a new species of Piperaceae from Hainan Island, China
FIGURE 1. Phylogenetic relationships among 20 Piper strains based on ITS gene sequences. Three species of Peperomia were used as the outgroup. The tree was constructed using the NJ method. Numbers at nodes represent levels (%) of bootstrap support from 1000 resampled datasets. L and M indicate branches that were also recovered using ML and MP methods, respectively.
FIGURE 1. Phylogenetic relationship among Ophiocordyceps nutans, O in Ophiocordyceps neonutans sp. nov., a new neotropical species from O. nutans complex (Ophiocordycipitaceae, Ascomycota)
FIGURE 1. Phylogenetic relationship among Ophiocordyceps nutans, O. neonutans and other Ophiocordyceps species based on rDNA internal transcribed spacer (ITS) sequences. Consensus tree (MV) obtained from the heuristic search is presented. The trees generated by both phylogenetic searches (BPP and ML) showed similar topologies.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.