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2,620 results for “Molecular Phylogeny”
Figure 2 from: Basibuyuk H, Budak M, Korkmaz E (2011) A molecular phylogeny of the Cephinae (Hymenoptera, Cephidae) based on mtDNA COI gene: a test of traditional classification. ZooKeys 130: 363-378. https://doi.org/10.3897/zookeys.130.1466
Figure 2 - Saturation plots of transversion and transition rates against JC69 distance at a first codon position b second codon position c third codon position, and d sum of data.
Figures 4-5 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figures 4-5 - Habitus of 4 Trechus beusti (Cueva de San Adrián) and 5 Trechus pieltaini (Cueva de Mairuelegorreta).
Figures 2-3 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figures 2-3 - Habitus of 2 Trechus grenieri (grotte de l´Eglise) and 3 Trechus uhagoni (Orobe doline).
Figures 15-20 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figures 15-20 - Aedeagus in lateral view and detail of internal sac of 15, 16 Trechus bouilloni sp. n. (Lizarraga pass) 17, 18 Trechus grenieri (Eglise cave) and 19, 20 Trechus uhagoni (Orobe doline). CP2, secondary copulatory piece.
Figures 11-14 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figures 11-14 - Aedeagus in dorsal view of 11 Trechus beusti (Cueva de San Adrián) 12 Trechus pieltaini (Cueva de Mairuelegorreta) 13 Trechus bruckoides sp. n. (Montagnon) and 14 Trechus brucki (Lac d'Anglas). CP2, secondary copulatory piece.
Figure 8-10 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figure 8-10 - Aedeagus in dorsal view of 8 Trechus bouilloni sp. n. (Lizarraga pass) 9 Trechus grenieri (Lapiaz de Lazur) and 10 Trechus uhagoni (Orobe doline). CP2, secondary copulatory piece.
Figure 35 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figure 35 - Distribution map of Trechus brucki group and related species. Material studied: symbols with cross.
Figure 34 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figure 34 - Phylogram of Trechus of the brucki group obtained in RAxML, using the combined data matrix. Number in nodes: ML bootstrap (>50%) (see Material and Methods for details). In blue, the Trechus brucki group sensu novo. In purple, Trechus bordei group. In red: Trechus bouilloni sp. n.
Figures 29-32 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figures 29-32 - 29 Genital armature of the female of Trechus bouilloni sp. n. (Lizarraga pass) 30 Aedeagus in lateral view of Trechus sharpi (Cueva la Cuevona) 31, 32 Aedeagus in dorsal and lateral view of Trechus carrilloi (Bosque de Saja).
Figures 21-28 from: Faille A, Bourdeau C, Fresneda J (2012) Molecular phylogeny of the Trechus brucki group, with description of two new species from the Pyreneo-Cantabrian area (France, Spain) (Coleoptera, Carabidae, Trechinae). ZooKeys 217: 11-51. https://doi.org/10.3897/zookeys.217.3136
Figures 21-28 - Aedeagus in lateral view and detail of internal sac of 21, 22 Trechus beusti (Cueva de San Adrián), 23, 24. Trechus pieltaini (Cueva de Mairuelegorreta), 25, 26 Trechus bruckoides sp. n. (Montagnon) and 27, 28 Trechus brucki (Lac d'Anglas). CP2, secondary copulatory piece.
Figure 4 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 4 - Phoronis ijimai Oka, 1897, NSMT-Te 885, transverse section through basal part of lophophore.
Figure 2 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 2 - Phoronis ijimai Oka, 1897, NSMT-Te 879. A Living individuals collected from the pier of Misaki Marine Biological Station B enlargement of living individuals C preserved individual (10% formalin seawater) with a transparent cylindrical tube.
Supplementary Figure S3 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Supplementary Figure S3 - Parsimonious reconstruction of four adult morphological characters among 11 phoronid species on the cladogram of the cluster analyses based on 32 morphological characters.
Supplementary Figure S1 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Supplementary Figure S1 - A Cladogram of single-linkage cluster analysis among 11 phoronid species based on 23 morphological characters excluding nephridial characters B majority-rule consensus tree of 100 equally parsimonious tree obtained by cladistics analysis among 11 phoronid species based on 23 morphological characters excluding nephridial characters. Numerals on nodes indicate frequency values.
Figure 7 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 7 - Phoronis ijimai. A NSMT-Te 878, eggs brooded in the lophophore (some tentacles have been removed) B NSMT-Te 884, transverse section through the basal part of the lophophore, showing mature eggs on the basal nidamental glands C NSMT-Te 883, enlargement of brooded eggs, showing various developmental stages. Abbreviations: eg egg; te tentacle.
Figure 8 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 8 - Phoronis emigi sp. n., NSMT-Te 714 (holotype), photographed in the preserved state (10% formalin seawater) before sectioning.
Figure 15 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 15 - Parsimonious reconstruction of four adult morphological characters among nine phoronid species on the maximum-likelihood tree based on concatenated COI–18S–28S dataset.
Figure 3 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 3 - Phoronis ijimai Oka, 1897, NSMT-Te 880. A Living bivalve (Barbatia sp.) with various sessile organisms B Living Phoronis ijimai on the shell (arrowheads).
Figure 14 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 14 - A Maximum-likelihood tree for 13 phoronid samples based on the combined 18S + 28S data set; three brachiopod species (Novocrania anomala, Discinisca cf. tenuis, and Glottidia pyramidata) are included as outgroup taxa B maximum-likelihood tree for 11 phoronid samples based on the combined COI + 18S + 28S data set; the tree is rooted with Phoronis ovalis. Scale bars indicate branch length in substitutions per site. Nodal support values are presented as the ML bootstrap value followed by the Bayesian posterior probability; only values >50% and 0.50, respectively, are shown.
Figure 13 from: Hirose M, Fukiage R, Katoh T, Kajihara H (2014) Description and molecular phylogeny of a new species of Phoronis (Phoronida) from Japan, with a redescription of topotypes of P. ijimai Oka, 1897. ZooKeys 398: 1-31. https://doi.org/10.3897/zookeys.398.5176
Figure 13 - A Maximum-likelihood tree for 15 phoronid samples based on 18S data; three brachiopod species (Novocrania anomala, Discinisca cf. tenuis, and Glottidia pyramidata) are included as outgroup taxa B maximum-likelihood tree for 12 phoronid samples based on COI data; the tree is rooted with Phoronis ovalis. The scale bars indicate branch length in substitutions per site. Nodal support values are presented as the ML bootstrap value followed by the Bayesian posterior probability; only values >50% and 0.50, respectively, are shown.
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