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3,206 results for “property (T)”
Inputs for calculating properties of molecular oxygen
<p>In [Javanainen <em>et al., </em><em>J. Phys. Chem. B</em> 2017, 121, 3, 518–528], we parametrized models for molecular oxygen and benchmarked a number of existing models. Recently, we noticed a mistake in the calculation of heat of vaporization, and thus reparametrized the models [ADD]. The simulation inputs for the performed benchmarks are provided here.</p> <p>The parameters of the new models are provided in the TOP folder. For each model (noQ, QL, QS), the LIQUID folder contains inputs for the simulation of liquid oxygen. The WATER and HEXADECANE folders contain files for the calculation of the energy of solvation into the corresponding phase. The SCRIPTS folder contains scripts for this purpose, and the workflow goes as follows:</p> <ol> <li>./mkdirs (creates directories)</li> <li>./mk_mdp_1 (creates mdp files for the first set of simulations)</li> <li>./mk_md_1 (creates tpr files for the first set of simulations)</li> <li>(run simulations in serial or parallel)</li> <li>repeat 2&3 with "1" replaced by "2" (the second set of simulations)</li> <li>./calc_dgdl_1 & ./calc_dgdl_2 (integrates for the electrostatic and LJ contributions to free energy)</li> </ol> <p> </p>
Waldock et al. 2020 Ecography: Insect occurrence in agricultural land-uses depends on realized niche and geographic range properties
<p>This file contains the site-level data from the PREDICTS database, code to develop environmental niche estimates for species from GBIF occurrences, and all statistical analysis investigating the role of species environmental niches in determining occupancy in agro-ecosystems used in the publication: Waldock et al. 2020 Ecography.</p>
Figure 4 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 4 Protease residual activity as a function of CO2 density at 40 °C.
Figure 9 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 9 The fillet softening development in 14 days storage at 4 °C.
Figure 3 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 3 Protease residual activity as a function of CO2 pressure at 40 °C.
Figure 7 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 7 Residual microbial counts as a function of CO2 density at 40 °C.
Figure 6 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 6 Residual microbial counts as a function of CO2 pressure at 40 °C.
Figure 5 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 5 The relationship between CO2 pressure and CO2 density at 40 °C.
Figure 1 from: Sugiharto SP, Bintoro N, Karyadi JNW, Pranoto Y (2020) Supercritical carbon dioxide pasteurization to reduce the activity of muscle protease and its impact on physicochemical properties of Nile tilapia. Research Ideas and Outcomes 6: e56887. https://doi.org/10.3897/rio.6.e56887
Figure 1 Schematic installation of pressure vessel.
MESA files for paper "Progenitor properties of type II supernovae: fitting to hydrodynamical models using Markov chain Monte Carlo methods"
<p>Inlists to reproduce the pre-SN simulations of the paper "Progenitor properties of type II supernovae: fitting to hydrodynamical models using Markov chain Monte Carlo methods". These simulations were performed using MESA version 10398.</p>
Star formation and morphological properties of galaxies in the P\lowercase{an}-STARRS 3$\pi$ survey- I.\\ A machine learning approach to galaxy and supernova classification
<pre>This is the catalog presented in Baldeschi, et al (2020). The catalog is subdivided in 13 csv files. Files description: First column: Panstar ID (integer) Second column: Right ascension [deg] (float) Third column: Declination [deg] (float) Fourth column: Probability for a source of being a star (P_star) (float) Fifth column: Probability for a galaxy of being higly star-forming (P_HSFF) (float) Sixth column: Probability for a galaxy of being spiral (P_spiral) (float) seventh column: Compleatness flag (string) If using this catalog for publications, please cite Baldeschi, et al (2020). Fourth column values are from Tachibana & Miller (2018). For a detailed description of the columns we refer to the Appendix A of Baldeschi, et al (2020).</pre>
Figure 1 from: Chaban TI, Matiychuk V, Komarytsya O, Myrko I, Chaban I, Ogurtsov V, Nektegaev I (2020) Anti-inflammatory properties of some novel thiazolo[4,5-b]pyridin-2-ones. Pharmacia 67(3): 121-127. https://doi.org/10.3897/pharmacia.67.e38969
Figure 1 Synthesis of 3-aryl-5-hydroxy-7-methyl-3H-thiazolo[4,5-b]pyridin-2-ones.
Probing fault frictional properties during afterslip up- and downdip of the 2017 Mw 7.3 Sarpol-e Zahab earthquake with space geodesy
<p>This zip file contains measurements of postseismic surface deformation due to the 2017 Mw 7.3 Sarpol-e Zahab earthquake derived from Sentinel-1 SAR data over a time period of one year after the mainshock. The line-of-sight (LOS) displacements of each satellite track are provided in high-resolution NetCDF file format.</p> <p># data format: NetCDF grid file</p> <p>dlos_yyyymmdd.grd ---- cumulative LOS displacement since the first postseismic acquisition of each track (unit: meters); <br> dates.dat ----- dates of the SAR image acquisitions of each track (ASCII file)<br> look_e/n/u.grd --- East, North, Vertical (Up) components of the line-of-sight direction, so that<br> <br> dlos_displacement = dUe*look_e + dUn*look_n + dUup*look_u</p> <p>where dUe, dUn, and dUup represent the Eastward, Northward, and Upward surface motion.</p> <p>Contact: Kang Wang (kjellywang@gmail.com or kwang@seismo.berkeley.edu)</p> <p>References:</p> <p>Wang, K and R. Bürgmann (2020), Probing fault frictional properties during afterslip up- and downdip of the 2017 Mw 7.3 Sarpol-e Zahab earthquake with space geodesy, Journal of Geophysical Research: Solid Earth<br> </p>
Preparation hollow TiO2 microspheres by microwave-assisted method in open system and the research of photocatalytic property of TiO2 microspheres
<p>FTIR spectrum was used to identify the functional groups on the carbon microspheres after heating under microwave. New bands in comparison with glucose at ~1700 and ~1640 cm-1 were attributed to carboxyl groups and aromatic C=C vibrations respectively, supporting the concept of aromatization of glucose during microwave-assisted heating. The presence of bands of carboxyl (-C=O) groups at ~1700 cm-1 and -OH stretching vibration at ~3400 cm-1 indicated that the reactive products with a higher abundance of hydroxyl functional groups, such as -COOH, were formed under the presence of hydrochloride acid and microwave irradiation. The decrease of bands at 1000-1300 cm-1 in carbon microspheres, which assigned to the C-OH stretching and -OH bending, also implied the condensation reactions and polymerization.</p> <p>All peaks in XRD of the calcined TiO2-C could be indexed as anatase phase of TiO2.</p>
Optical properties and carrier dynamics in Co-doped ZnO nanorods
<p>The dataset includes the parts collected at EPFL, uploaded for open access in accordance to SNSF policy.</p>
Cellular electrical properties of specific membrane capacitance and cytoplasmic conductivity
<p>The submitted datasets contain the original data of the cell's electronic characteristic parameters of specific membrane capacitance and cytoplasmic conductivity.</p> <p>The cell types include H1299 cells treated with DMSO and 4-Mu, 95C cells treated with DMSO and 4-Mu, A549 control cells and A549 sg-RNA3 cells. The <span>scatter plots and bar graphs demonstrated the differences of electroninc properties were according to these datasets.</span></p>
Data from: Diverse and complex muscle spindle afferent firing properties emerge from multiscale muscle mechanics
<p>Despite decades of research, we lack a mechanistic framework capable of predicting how movement-related signals are transformed into the diversity of muscle spindle afferent firing patterns observed experimentally, particularly in naturalistic behaviors. Here, a biophysical model demonstrates that well-known firing characteristics of mammalian muscle spindle Ia afferents – including movement history dependence, and nonlinear scaling with muscle stretch velocity – emerge from first principles of muscle contractile mechanics. Further, mechanical interactions of the muscle spindle with muscle-tendon dynamics reveal how motor commands to the muscle (alpha drive) versus muscle spindle (gamma drive) can cause highly variable and complex activity during active muscle contraction and muscle stretch that defy simple explanation. Depending on the neuromechanical conditions, the muscle spindle model output appears to "encode" aspects of muscle force, yank, length, stiffness, velocity, and/or acceleration, providing an extendable, multiscale, biophysical framework for understanding and predicting proprioceptive sensory signals in health and disease.</p>
Scheme 3 from: Ihnatova T, Kaplaushenko A, Frolova Y, Pryhlo E (2021) Synthesis and antioxidant properties of some new 5-phenethyl-3-thio-1,2,4-triazoles. Pharmacia 68(1): 129-133. https://doi.org/10.3897/pharmacia.68.e53320
Scheme 3 Synthesis of 2-((4-R-5-phenethyl-4H-1,2,4-triazole-3-yl)thio)acetic(benzoic) acids.
Scheme 2 from: Ihnatova T, Kaplaushenko A, Frolova Y, Pryhlo E (2021) Synthesis and antioxidant properties of some new 5-phenethyl-3-thio-1,2,4-triazoles. Pharmacia 68(1): 129-133. https://doi.org/10.3897/pharmacia.68.e53320
Scheme 2 Synthesis of 2-((4-R-5-phenethyl-4H-1,2,4-triazole-3-yl)thio)nitriles.
Scheme 1 from: Ihnatova T, Kaplaushenko A, Frolova Y, Pryhlo E (2021) Synthesis and antioxidant properties of some new 5-phenethyl-3-thio-1,2,4-triazoles. Pharmacia 68(1): 129-133. https://doi.org/10.3897/pharmacia.68.e53320
Scheme 1 Synthesis of 4-R-5-phenethyl-4H-1,2,4-triazole-3-thiols.
ScienceDex guides
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.