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Supplementary material 1 from: Timm L, Schaal J, Sann M (2024) A DNA-barcoding-based approach to quantitatively investigate larval food resources of cavity-nesting wasps from trap nests. Journal of Hymenoptera Research 97: 45-56. https://doi.org/10.3897/jhr.97.117410
PCR Conditions
Supplementary material 2 from: Timm L, Schaal J, Sann M (2024) A DNA-barcoding-based approach to quantitatively investigate larval food resources of cavity-nesting wasps from trap nests. Journal of Hymenoptera Research 97: 45-56. https://doi.org/10.3897/jhr.97.117410
Barcode and nest information
Supplementary material 3 from: Timm L, Schaal J, Sann M (2024) A DNA-barcoding-based approach to quantitatively investigate larval food resources of cavity-nesting wasps from trap nests. Journal of Hymenoptera Research 97: 45-56. https://doi.org/10.3897/jhr.97.117410
Infos on arthopods
Figure 2 from: Timm L, Schaal J, Sann M (2024) A DNA-barcoding-based approach to quantitatively investigate larval food resources of cavity-nesting wasps from trap nests. Journal of Hymenoptera Research 97: 45-56. https://doi.org/10.3897/jhr.97.117410
Figure 2 Tri-trophic interaction networks of the studied vespid and apoid wasp species comprising identified prey species and natural enemies. Interaction networks were conducted for the A spider-hunting apoid wasp T. clavicerumB aphid-hunting apoid wasp species P. corniger, P. gracilis and P. fuscipennis and CLepidoptera-hunting vespid wasp A. nigricornis, cricket-hunting apoid wasps I. mexicana and weevil-hunting vespid wasp M. parvulus. Yellow boxes represent the nest cell and the respective wasp larva, blue boxes the natural enemies and green boxes the prey species and the number of prey individuals per species per nest cell. Boxes with no number represent one individual only. The natural enemy Pronotalia sp. was not counted due to a high and randomely distributed number of individuals in the nest cell (> 40). Connections of nests and prey species are marked with grey bars.
Figure 1 from: Timm L, Schaal J, Sann M (2024) A DNA-barcoding-based approach to quantitatively investigate larval food resources of cavity-nesting wasps from trap nests. Journal of Hymenoptera Research 97: 45-56. https://doi.org/10.3897/jhr.97.117410
Figure 1 Nesting site and sample collection procedure: A example of a trap nest placed in the Botanical Garden of the University of Hohenheim, Stuttgart, Germany B, C nests of Passaloecus gracilis and Isodontia mexicana. One nest comprises several nest cells, which are separated by a given nesting material e.g. silky membran (B) or dry grass fragments (C) E morphotyped aphids F morphotyped spiders.
FIG. 4 in DNA barcoding revealed the presence of the invasive freshwater mussel Sinanodonta aff. woodiana (Lea, 1834) in Afghanistan
FIG. 4. — Median joining network for COI sequences of Sinanodonta aff. woodiana (N = 100; Lineage E (Table 1)). The numbers near branches show the number of mutation sites.
FIG. 1 in DNA barcoding revealed the presence of the invasive freshwater mussel Sinanodonta aff. woodiana (Lea, 1834) in Afghanistan
FIG. 1. — Map illustrating Amu Darya River position; Point 1 (red circle) indicates sampling site of Sinanodonta aff. woodiana (Lea, 1834) in Amu Darya River in Kunduz Province, Afghanistan.
FIGURE 16 in Morphological description and DNA barcoding of Ceratophysella gracilimucronata sp. nov. (Collembola: Hypogastruridae) from China, with a key to species of the C. armata group of the Sino-Japanese Region
FIGURE 16. Molecular phylogeny tree based on mtDNA COI gene.
FIGURE 15 in Morphological description and DNA barcoding of Ceratophysella gracilimucronata sp. nov. (Collembola: Hypogastruridae) from China, with a key to species of the C. armata group of the Sino-Japanese Region
FIGURE 15. Furca of C. gracilimucronata sp. nov.
FIGURE 12 in Morphological description and DNA barcoding of Ceratophysella gracilimucronata sp. nov. (Collembola: Hypogastruridae) from China, with a key to species of the C. armata group of the Sino-Japanese Region
FIGURE 12. Chaetotaxy of head of C. gracilimucronata sp. nov.
FIGURE 14 in Morphological description and DNA barcoding of Ceratophysella gracilimucronata sp. nov. (Collembola: Hypogastruridae) from China, with a key to species of the C. armata group of the Sino-Japanese Region
FIGURE 14. Chaetotaxy of Abd. I–V of C. gracilimucronata sp. nov.
FIGURE 13 in Morphological description and DNA barcoding of Ceratophysella gracilimucronata sp. nov. (Collembola: Hypogastruridae) from China, with a key to species of the C. armata group of the Sino-Japanese Region
FIGURE 13. Chaetotaxy of Th. I–III of C. gracilimucronata sp. nov.
TABLE 1 in Connecting the dots: DNA barcoding and lectotype designation shedding light on Labrundinia longipalpis (Goetghebuer, 1921), an intriguing non-biting midge (Chironomidae, Tanypodinae)
<p><b>TABLE 1.</b> List of analyzed specimens, including their sample localities, life stage, and voucher reference and GenBank accession numbers.</p><table><tbody><tr><th><b>Taxon</b></th><th><b>Country</b></th><th><b>Stage</b></th><th><b>Voucher number</b></th><th><b>Accession number</b></th></tr></tbody><tbody><tr><th><i>Labrundinia amandae</i></th><td>Brazil</td><td>Immature</td><td>NEOTA044-12</td><td>JX887502.1</td></tr><tr><th><i>Labrundinia fiorelinii</i></th><td>Brazil</td><td>Immature</td><td>MPCB005-09</td><td>HM379514.1</td></tr><tr><th><i>Labrundinia jasoni</i></th><td>Brazil</td><td>Immature</td><td>NEOTA059-12</td><td>JX887518.1</td></tr><tr><th><i>Labrundinia longipalpis</i></th><td>Finland</td><td>Adult</td><td>ZMUO.025300</td><td>MZ660598.1</td></tr><tr><th><i>Labrundinia longipalpis</i></th><td>Finland</td><td>Adult</td><td>ZMUO.025299</td><td>MZ658837.1</td></tr><tr><th><i>Labrundinia maculata</i></th><td>USA</td><td>Immature</td><td>CATP8. 8</td><td>MW283530.1</td></tr><tr><th><i>Labrundinia mayaca</i></th><td>Brazil</td><td>Immature</td><td>NEOTA029-12</td><td>JX887525.1</td></tr><tr><th><i>Labrundinia parafittkaui</i></th><td>Brazil</td><td>Adult</td><td>NEOTA073-12</td><td>JX887508.1</td></tr><tr><th><i>Labrundinia parareniformis</i></th><td>Brazil</td><td>Immature</td><td>NEOTA035-12</td><td>JX887496.1</td></tr><tr><th><i>Labrundinia paravirescens</i></th><td>Brazil</td><td>Adult</td><td>NEOTA041-12</td><td>JX887527.1</td></tr><tr><th><i>Labrundinia reniformis</i></th><td>Brazil</td><td>Adult</td><td>NEOTA033-12</td><td>JX887489.1</td></tr><tr><th><i>Labrundinia sofiae</i></th><td>Brazil</td><td>Adult</td><td>NEOTA076-12</td><td>JX887517.1</td></tr></tbody></table>
TABLE 1 in Morphological description of a new species of Capnia (Plecoptera: Capniidae) with DNA barcoding of genus members from the Russian Far East
<p><b>TABLE 1.</b> List of taxa, isolate numbers, sex, locations and GenBank accessions.</p><table><tbody><tr><th>Species</th><th>Isolate</th><th>Sex</th><th>Country</th><th>Coordinates</th><th>Accession number</th></tr></tbody><tbody><tr><th><i>Capnia khingana</i></th><td>TVA62</td><td>Male</td><td>Russia: Amurskaya Oblast, Amur River Basin, Eracta River</td><td>49.09285 N 130.591083 E</td><td>OL343052</td></tr><tr><th><i>C. khingana</i></th><td>TVA95</td><td>Male</td><td>Russia: Amurskaya Oblast, Amur River Basin, Eracta River</td><td>49.09285 N 130.591083 E</td><td>OL343053</td></tr><tr><th><i>C. khingana</i></th><td>TVA160</td><td>Female</td><td>Russia: Khabarovskiy Kray, Amur River Basin, Khankuka stream</td><td>50.757554 N 137.413548 E</td><td>OL343054</td></tr><tr><th><i>C. yavorskayae</i> <b>sp. nov.</b></th><td>TVA163</td><td>Female</td><td>Russia: Khabarovskiy Kray, Amur River Basin, Khankuka Stream</td><td>50.756951 N 137.412730 E</td><td>OL343055</td></tr><tr><th><i>C. yavorskayae</i> <b>sp. nov.</b></th><td>TVA184</td><td>Female</td><td>Russia: Khabarovskiy Kray, Amur River Basin, Khankuka Stream</td><td>50.768183 N 137.421572 E</td><td>OL343062</td></tr><tr><th><i>C. nigra</i></th><td>TVA166</td><td>Male</td><td>Russia: Khabarovskiy Kray, Amur River Basin, Gorin River</td><td>50.890137 N 137.457746 E</td><td>OL343056</td></tr><tr><th><i>C. nearctica</i></th><td>TVA167</td><td>Male</td><td>Russia: Magadan Oblast, Ola River</td><td>59.576183 N 151.270017 E</td><td>OL343057</td></tr><tr><th><i>C. bargusinica</i></th><td>TVA168</td><td>Female</td><td>Russia: Magadan Oblast, Ola River Basin, Donyshko River</td><td>60.385667 N 151.475 E</td><td>OL343058</td></tr><tr><th><i>C. kurnakovi</i></th><td>TVA170</td><td>Female</td><td>Russia: Magadan Oblast, Ola River</td><td>59.576183 N 151.270017 E</td><td>OL343059</td></tr><tr><th><i>C. rara</i></th><td>TVA171</td><td>Female</td><td>Russia: Magadan Oblast, Ola River</td><td>59.576183 N 151.270017 E</td><td>OL343060</td></tr><tr><th><i>C. rara</i></th><td>TVA172</td><td>Male</td><td>Russia: Magadan Oblast, Ola River</td><td>59.576183 N 151.270017 E</td><td>OL343061</td></tr><tr><th><i>C. aligera</i></th><td>TVA186</td><td>Male</td><td>Russia: Khabarovskiy Kray, Amur River Basin, Gorin River</td><td>50.929194 N 137.754936 E</td><td>OL343063</td></tr></tbody></table>
Fig. 9 in Cestode fauna of murid and cricetid rodents in Hokkaido, Japan, with assignment of DNA barcodes
Fig. 9. Larvae of the family Taeniidae. A, The proliferated cysticerci of Taenia crassiceps in the subcutaneous tissue of Myodes rufocanus; B, the strobilocercus of Hydatigera taeniaeformis from the liver of Rattus norvegicus; C, the disseminated alveolar hydatid of Echinococcus multilocularis in peritoneal organs of My. rufocanus. Scale bars: 20 mm.
Fig. 7. A in Cestode fauna of murid and cricetid rodents in Hokkaido, Japan, with assignment of DNA barcodes
Fig. 7. A maximum-likelihood phylogenetic tree of the genus Paranoplocephala. The tree was made with mitochondrial cox1 sequences (546 nucleotide sites) under the substitutional model GTR+G+I. The isolates of this study (19AK378, 19AK412, 19AK419, 19AK436, 19AK454-2, and 19AK454-3) are shown in bold face. The DNA accession number of each taxon is shown in parenthesis. Hymenolepis diminuta (accession no. AF314223) was used as an outgroup taxon.
Supplementary material 4 from: Mahima K, Umapathy S, Sudhakar JV, Sathishkumar R (2021) Systematic reinstatement of highly sacred Ficus krishnae based on differences in morphology and DNA barcoding from Ficus benghalensis (Moraceae). PhytoKeys 186: 121-138. https://doi.org/10.3897/phytokeys.186.74086
Table S4. Vegetative and floral characters
Supplementary material 3 from: Mahima K, Umapathy S, Sudhakar JV, Sathishkumar R (2021) Systematic reinstatement of highly sacred Ficus krishnae based on differences in morphology and DNA barcoding from Ficus benghalensis (Moraceae). PhytoKeys 186: 121-138. https://doi.org/10.3897/phytokeys.186.74086
Table S3. List of Ficus sequences retrieved from GenBank
Supplementary material 2 from: Mahima K, Umapathy S, Sudhakar JV, Sathishkumar R (2021) Systematic reinstatement of highly sacred Ficus krishnae based on differences in morphology and DNA barcoding from Ficus benghalensis (Moraceae). PhytoKeys 186: 121-138. https://doi.org/10.3897/phytokeys.186.74086
Table S2. List of Ficus species collected from different parts of India
Figure 2 from: Mahima K, Umapathy S, Sudhakar JV, Sathishkumar R (2021) Systematic reinstatement of highly sacred Ficus krishnae based on differences in morphology and DNA barcoding from Ficus benghalensis (Moraceae). PhytoKeys 186: 121-138. https://doi.org/10.3897/phytokeys.186.74086
Figure 2 Maximum Clade Credibility (MCC) tree from Bayesian analysis using two DNA barcode markers (ITS2+trnH-psbA) with posterior probabilities values in percentage that are shown at nodes.
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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DANDI Archive for NWB datasets
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International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.