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429
datasets available to search
ShareScore release 0.9.0
Dataset results
429 results for “Differential methylation”
Divergent Epigenetic and Transcriptomic Remodelling during Monocyte Subset Differentiation in Systemic Lupus Erythematosus [methylation]
GEO Series GSE249639. Homo sapiens. 137 samples. Type: Methylation profiling by genome tiling array.
Association of Environmental Exposure to Chromium with Differential DNA Methylation: An Epigenome-Wide Study
GEO Series GSE206418. Homo sapiens. 20 samples. Type: Methylation profiling by genome tiling array.
A Novel Approach Identifies New Differentially Methylated Regions (DMRs) Associated with Imprinted Genes
GEO Series GSE22091. Homo sapiens. 26 samples. Type: Methylation profiling by array.
Chronic Chlamydia infection in fallopian tube organoids alters epithelial differentiation and accelerate methylation changes
GEO Series GSE107712. Homo sapiens. 46 samples. Type: Expression profiling by array.
Genome-wide CpG methylation during osteogenic and myogenic differentiation from adipose- derived stem cells.
GEO Series GSE33896. Homo sapiens. 16 samples. Type: Methylation profiling by array.
DNA methylation profiling of proliferating and differentiating keratinocytes
GEO Series GSE144669. Homo sapiens. 10 samples. Type: Methylation profiling by genome tiling array.
Genome-Wide DNA Methylation Profiling Identifies Differential Methylation in Uninvolved Psoriatic Epidermis
GEO Series GSE103038. Homo sapiens. 12 samples. Type: Methylation profiling by high throughput sequencing.
CRISPR/dCas9 DNA methylation editing is heritable during human haematopoiesis and can impair differentiation in vivo [methylation array]
GEO Series GSE222178. Homo sapiens. 9 samples. Type: Methylation profiling by genome tiling array.
Differential DNA methylation profile in hepatocellular carcinoma
GEO Series GSE78904. Homo sapiens. 96 samples. Type: Methylation profiling by genome tiling array.
Single-cell m6A profiling in the mouse brain uncovers cell type-specific RNA methylomes and age-dependent differential methylation [aged study]
GEO Series GSE268159. Mus musculus. 8 samples. Type: Expression profiling by high throughput sequencing.
The Drosophila histone methyl-transferase SET1 coordinates multiple signaling pathways in regulating male germline stem cell maintenance and differentiation
GEO Series GSE254876. Drosophila melanogaster. 24 samples. Type: Expression profiling by high throughput sequencing.
Differential H3K4 methylation identifies developmentally poised hematopoietic genes
GEO Series GSE11044. Mus musculus. 22 samples. Type: Expression profiling by array; Genome binding/occupancy profiling by genome tiling array.
E14-EB-S2-4-Mass-spec-data for paper "A stepwise mode of TGFβ-SMAD signaling and DNA methylation regulates naïve-to-primed pluripotency and differentiation"
<p>This E14-EB-S2-4-Mass-spec-data dataset includes both raw data and processed matrices for peptides and proteins.</p>
Regionalpcs ROSMAP Differential Methylation Results
<p>This dataset contains differential methylation results for the manuscript titled</p> <p><strong><em>"regionalpcs improve discovery of DNA methylation associations with complex traits"</em></strong></p> <p>Tiffany Eulalio*<sup>1</sup>, Min Woo Sun<sup>1</sup>, Olivier Gevaert<sup>1</sup>, Michael D. Greicius<sup>2</sup>, Thomas J. Montine<sup>3</sup>, Daniel Nachun*‡<sup>3</sup>, Stephen B. Montgomery*‡<sup>1,3</sup></p> <p>‡ These authors contributed equally as senior authors</p> <p>* Corresponding authors: Tiffany Eulalio (<a href="mailto:eulalio@alumn.stanford.edu">eulalio@alumn.stanford.edu</a>), Daniel Nachun (<a href="mailto:dnachun@stanford.edu">dnachun@stanford.edu</a>), Stephen B. Montgomery (<a href="mailto:smontgom@stanford.edu">smontgom@stanford.edu</a>)</p> <p> Author affiliations:</p> <p>1. Department of Biomedical Data Science, Stanford University, Stanford, CA</p> <p>2. Department of Neurology & Neurological Sciences, Stanford University, Stanford, CA</p> <p>3. Department of Pathology, Stanford University, Stanford, CA</p> <p> </p> <p><strong>Dataset description</strong>:</p> <p>Differential methylation analyses were performed using methylation summarized as averages, regional PCs, and CpGs across multiple gene regions: full gene region, gene body, preTSS, and promoters.</p> <p>Files are named according to the gene region:</p> <ul> <li><code>[gene region]_full_DM_results.csv</code>: Comprehensive differential methylation results.</li> <li><code>[gene region]_all_counts.csv</code>: Summarized counts of significant differential methylation results.</li> </ul>
Sperm Phenotype and Differentially Methylated Regions
ClinicalTrials.gov study NCT05461079. IPD Sharing: NO. Countries: 1. Publications: 0.
Chronic cadmium exposure induces differential methylation in mice spermatozoa
GEO Series GSE158455. Mus musculus. 30 samples. Type: Methylation profiling by high throughput sequencing.
Differential Methylation of CircRNA m6A in the APP/PS1 Alzheimer's Disease Mouse Model [cirRNA-seq]
GEO Series GSE216901. Mus musculus. 8 samples. Type: Methylation profiling by high throughput sequencing; Other.
B cell differentiation is limited by de novo DNA methylation [ATAC-seq]
GEO Series GSE89470. Mus musculus. 17 samples. Type: Genome binding/occupancy profiling by high throughput sequencing.
B cell differentiation is limited by de novo DNA methylation [RNA-seq]
GEO Series GSE89412. Mus musculus. 18 samples. Type: Expression profiling by high throughput sequencing.
Epigenetic analysis of Paget’s disease of bone identifies differentially methylated loci that predict disease status
GEO Series GSE163970. Homo sapiens. 492 samples. Type: Methylation profiling by array.
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These curated guides explain access requirements, typical timelines, costs, and reuse considerations for widely used research datasets.
Allen Brain Atlas
Allen Brain Atlas is an Allen Institute collection of brain map atlases, datasets, APIs, and analysis tools covering mouse, human, and non-human primate brain resources.
Annotated Behaviour and Observability Dataset (ABODe)
ABODe is a University of Edinburgh DataShare dataset for behavior classification in group-housed mice using home-cage video, identities, bounding boxes, ground-plate positions, and annotator labels.
DANDI Archive for NWB datasets
DANDI is a BRAIN Initiative archive for publishing and sharing neurophysiology data, including electrophysiology, optophysiology, and behavioral data packaged as NWB and related standards.
International Brain Laboratory public data
The International Brain Laboratory public data releases expose standardized mouse decision-making experiments, including Neuropixels recordings, widefield calcium imaging, behavior, and session metadata accessed through the ONE API.
OpenNeuro
OpenNeuro is a free, open platform for sharing neuroimaging datasets, with public search, dataset pages, and download paths for web, S3, DataLad, and the OpenNeuro CLI.