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763 results for “Mitochondrial DNA”
FIGURE 4 in Colour patterns to sequences: a perspective on the systematics of the Hyperolius viridiflavus group (Anura: Hyperoliidae) using mitochondrial DNA
FIGURE 4. Localities of sequences (black circles), type locality (star) and location of junior synonyms of Hyperolius viridiflavus. Locality codes are explained in Table 3.
FIGURE 3 in Colour patterns to sequences: a perspective on the systematics of the Hyperolius viridiflavus group (Anura: Hyperoliidae) using mitochondrial DNA
FIGURE 3. Colour patterns of some of the variation recognised in taxa now included in H. viridiflavus. After Laurent (1983): 1–9, 11–13 Hyperolius karissimbiensis françoisi; 10, 14, 16–18 Hyperolius viridiflavus xanthogrammus; 15, 19–26 Hyperolius viridiflavus hybridus. After Ahl (1931): 27–31 Hyperolius variabilis. Ahl's illustrations were taken from Tornier (1897).
Supplementary material 1 from: Conrado AC, Arruda H, Stanton DWG, James SW, Kille P, Brown G, Silva E, Dupont L, Taheri S, Morgan AJ, Simões N, Rodrigues A, Montiel R, Cunha L (2017) The complete mitochondrial DNA sequence of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata): Mitogenome characterization and phylogenetic positioning. ZooKeys 688: 1-13. https://doi.org/10.3897/zookeys.688.13721
Inferred secondary structure of 22 tRNA genes in the mitochondrial DNA of the pantropical earthworm Pontoscolex corethrurus (Rhinodrilidae, Clitellata). :
Supporting data for: "mtGrasp: Streamlined mitochondrial genome reference-grade assembly and standardization to enhance mitogenome resources and improve the development of environmental DNA assays"
<p>Here, we provide supporting data for the manuscript "mtGrasp: Streamlined mitochondrial genome reference-grade assembly and standardization to enhance mitogenome resources and improve the development of environmental DNA assays".</p> <p>Phylogenetic_analysis.tar.gz contains the script and fasta files used for the phylogenetic analysis, and Mitogenomes.tar.gz contains the mitochondrial sequences utilized that are not publicly available in GenBank.</p>
Ancient mitochondrial DNA
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Haplotype analysis of the mitochondrial DNA d-loop region reveals the maternal origin and historical dynamics among the indigenous goat populations in east and west of the Democratic Republic of Congo (DRC)
<p><span>This study aimed at assessing haplotype diversity and population dynamics of three Congolese indigenous goat populations that included Kasai goat (KG), small goat (SG), and dwarf goat (DG) of the Democratic Republic of Congo (DRC). The 1,169 bp <em>d-loop</em> region of mitochondrial DNA (mtDNA) was sequenced for 339 Congolese indigenous goats. The total length of sequences was used to generate the haplotypes and evaluate their diversities, whereas the hypervariable region (HVI, 453 bp) was analyzed to define the maternal variation and the demographic dynamic. A total of 568 segregating sites that generated 192 haplotypes were observed from the entire <em>d-loop</em> region (1,169 bp <em>d-loop</em>). Phylogenetic analyses using reference haplotypes from the six globally defined goat mtDNA haplogroups showed that all the three Congolese indigenous goat populations studied clustered into the dominant haplogroup A, as revealed by the Neighbor-joining (NJ) tree and median-joining (MJ) network. Nine haplotypes were shared between the studied goats and goat populations from Pakistan (1 haplotype), Kenya, Ethiopia and Algeria (1 haplotype), Zimbabwe (1 haplotype), Cameroon (3 haplotypes), and Mozambique (3 haplotypes). The population pairwise analysis (<em>F<sub>ST</sub></em>) indicated a weak differentiation between the Congolese indigenous goat populations. Negative and significant (<em>p</em>-value < 0.05) values for <em>F</em>u's <em>F</em>s (-20.418) and Tajima's (-2.189) tests showed the expansion in the history of the three Congolese indigenous goat populations. These results suggest a weak differentiation and a single maternal origin for the studied goats. This information will contribute to the improvement of the management strategies and long-term conservation of indigenous goats in DRC</span><span>.</span></p>
Supplementary material 1 from: Li J, Lin R-R, Zhang Y-Y, Hu K-J, Zhao Y-Q, Li Y, Huang Z-R, Zhang X, Geng X-X, Ding J-H (2018) Characterization of the complete mitochondrial DNA of Theretra japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae). ZooKeys 754: 127-139. https://doi.org/10.3897/zookeys.754.23404
Phylogenetic analysis : Explanation note: ML tree constructed based on the cox1 barcodes of genus Theretra using B. mori as outgroups. The asterisk represents the species researched presently.
FIGURE 3 in Molecular phylogenetic analysis of subfamilial placement of Haplotropis Saussure, 1888 (Orthoptera: Pamphagidae) based on mitochondrial and nuclear DNA markers
FIGURE 3. Phylogenetic tree based on the nucleotide sequences of ITS2 region of Pamphagidae. Support values shown as: SH-aLRT support/ ultrafast bootstrap (probability> 80/90 considered significant). The brackets on the right side show subfamily and family clusters.
FIGURE 2 in Molecular phylogenetic analysis of subfamilial placement of Haplotropis Saussure, 1888 (Orthoptera: Pamphagidae) based on mitochondrial and nuclear DNA markers
FIGURE 2. Phylogenetic tree based on the nucleotide sequences of COII mitochondrial gene of Pamphagidae. Support values shown as: SH-aLRT support/ ultrafast bootstrap (probability> 80/90 considered significant). The brackets on the right side show subfamily and family clusters.
FIGURE 1 in Molecular phylogenetic analysis of subfamilial placement of Haplotropis Saussure, 1888 (Orthoptera: Pamphagidae) based on mitochondrial and nuclear DNA markers
FIGURE 1. Phylogenetic tree, based on the nucleotide sequences of COI mitochondrial gene of Pamphagidae. Support values shown as: SH-aLRT support/ultrafast bootstrap (probability> 80/90 considered significant). The brackets on the right side show subfamily and family clusters.
FIGURE 5 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 5. Charinus rocamadre (male in lot ICN-Am-159). A. Male gonopods in dorsal view, B. Detail of lobus dorsalis (LoD), C. Detail of lobus lateralis primus (LoL1) and lobus lateralis secundus (LoL2), D. Detail of subapical part of LoL1 and LoL2. LaM: Lamina medialis. Fi: Fistula. Scale bars: A=100 μm, B=20 μm, C=20 μm, D=4 μm.
FIGURE 4 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 4. Charinus rocamadre (female in lot ICN-Am-159, same specimen of figure 1). A. Female gonopods, B. Detail of gonopod, C. Detail of fluted and porous surface of the gonopod, D. Detail of flap-like soft projection, E. Detail of smooth and porous surface of the flap-like projection, F. Detail of atrium showing glandular openings. Scale bars: A=100 μm, B=20 μm, C=1 μm, D=10 μm, E=1 μm, F=5 μm.
FIGURE 2 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 2. Charinus rocamadre (female in lot ICN-Am-159, same specimen of figure 1). A. Right chelicera (inner view), B. Detail of chelicera showing internal teeth and denticles, C. Right chelicera (outer view), D. Detail of chelicerae showing denti- form relief. Scale bars: A & C=1 mm, B & D=0.5 mm.
FIGURE 6 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 6. Charinus rocamadre (male in lot ICN-Am-159, same specimen of figure 5). A. Male gonopods in ventral view, B. Male gonopods in apical view, C. Processus internus (PI), D. Detail of basal part of PI, E. Lamina medialis (LaM), F. Detail of outer surface of LaM, G. Detail of inner surface of LaM, H. Detail of lobus lateralis primus (LoL1) and lobus lateralis secundus (LoL2) in apical view. LoD: Lobus dorsalis. Fi: Fistula. GO: Genital operculum. Scale bars: A=100 μm, B=100 μm, C=20 μm, D=4 μm, E=20 μm, F=4 μm, G=2 μm, H=20 μm.
FIGURE 3 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 3. Charinus rocamadre (female in lot ICN-Am-159, same specimen of figure 1). A. Trochanter and femur in ventral view, B. Trochanter and femur in dorsal view, C. Patella, tibia, distitarsus, and claw in ventral view, D. Patella, tibia, distitarsus, and claw in dorsal view, E. Leg I, detail of the last tibial articles and first tarsal articles, F. Detail of second segment of tarsus showing the subdistal part with white ring, G. Leg IV, basitibia III and distitibia showing trichobothriotaxy. Scale bars: A–E, G=1 mm, F=0.5 mm.
FIGURE 1 in Charinus rocamadre (Amblypygi, Charinidae): description of the female, ultrastructure of the male and female gonopods, and mitochondrial DNA sequences
FIGURE 1. Charinus rocamadre (female in lot ICN-Am-159). A. Dorsal habitus, B. Carapace, C. Anterior area of carapace, D. Sternum, and E. Detail of the sternites. Scale bars: A=2 mm, B–E=1 mm.
Fig. 3 in A phylogeny of Sericini with particular reference to Chinese species using mitochondrial and ribosomal DNA (Coleoptera: Scarabaeidae)
Fig. 3 Projections of phylogenetic relationships of selected Sericina clades into geographical space, illustrating the spatial within clade divergence between Himalayan and Chinese lowland species. a Sericina subclade 2 (Fig. 2), the North American clade is not shown, b detail of
Fig. 2 in DNA barcoding in Dorcadionini (Coleoptera, Cerambycidae) uncovers mitochondrial-morphological discordance and the hybridogenic origin of several subspecies
Fig. 2 Maximum clade credibility ultrametric tree generated with Bayesian inference in BEAST from 162 Dorcadionini COI sequences (152 from this study, 10 from GenBank). Clades with numerous sequences and no delimitation issues are collapsed, with numbers
Fig. 6 in DNA barcoding in Dorcadionini (Coleoptera, Cerambycidae) uncovers mitochondrial-morphological discordance and the hybridogenic origin of several subspecies
Fig. 6 North-western distribution limit of D. equestre. Black circles: D. equestre equestre, red circles: D. equestre transsilvanicum. Yellow crosses: localities for the barcoded specimens. Distribution based on published localities, first author collection and other public collections
Fig. 7 in DNA barcoding in Dorcadionini (Coleoptera, Cerambycidae) uncovers mitochondrial-morphological discordance and the hybridogenic origin of several subspecies
Fig. 7 Habitus of voucher specimens (from left to right): Dorcadion lugubre lugubre (luKe1001 and luKe0801), D. lugubre × D. lineatocolle (linPro1001) and D. lineatocolle (linAng1001). All at the same
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Allen Brain Atlas
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Annotated Behaviour and Observability Dataset (ABODe)
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